Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8093718.1

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 595

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8093718.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

ccgccggcctcttcaacggtccgatcctcagtaactccgattgctttcatcagcctaatctgaacaagttcttggccttgggacgacctgcttggaaggaagcacgtgccacacttcagaagctactttcatctactgagccaacattgcgtgataatgaaagtttaaagcagaaatcactgattccattgagcaaggtggaaatgctggttcctatggcgattggggactatacggacttcttttcatcgatgcatcacgcaaagaactgcgggaccatgtttcgtggtccacagaatgcaattcaaccgaactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

104

Amino Acids

11.54

Weight (kDa)

9.11

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AciI	CCGC	2 cut(s)	2, 272
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	100
AcvI	CACGTG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	15, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	6, 74
Asp700I	GAANNNNTTC	1 cut(s)	67
AspS9I	GGNCC	3 cut(s)	19, 275, 289
AvaII	GGWCC	3 cut(s)	19, 275, 289
BbrPI	CACGTG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	96
Bme18I	GGWCC	3 cut(s)	19, 275, 289
BmgT120I	GGNCC	3 cut(s)	19, 275, 289
BmiI	GGNNCC	2 cut(s)	212, 276
BmsI	GCATC	2 cut(s)	242, 264
Bsa29I	ATCGAT	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	4
Bse3DI	GCAATG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	77
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	42, 128
BshFI	GGCC	2 cut(s)	8, 76
BshVI	ATCGAT	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	3 cut(s)	95, 241, 288
BsmFI	GGGAC	3 cut(s)	95, 241, 288
BsmI	GAATGC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	8, 76
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	2, 272
BspANI	GGCC	2 cut(s)	8, 76
BspCNI	CTCAG	2 cut(s)	41, 129
BspDI	ATCGAT	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	212, 276
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	28, 137
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	8, 76
BsuTUI	ATCGAT	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	19, 275, 289
ClaI	ATCGAT	1 cut(s)	250
CpoI	CGGWCCG	1 cut(s)	19
CspI	CGGWCCG	1 cut(s)	19
CviAII	CATG	1 cut(s)	279
CviJI	RGCY	5 cut(s)	8, 54, 76, 123, 141
CviKI_1	RGCY	5 cut(s)	8, 54, 76, 123, 141
DdeI	CTNAG	2 cut(s)	28, 137
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DraI	TTTAAA	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	19, 275, 289
Eco57I	CTGAAG	1 cut(s)	100
Eco72I	CACGTG	1 cut(s)	106
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	1 cut(s)	282
FaiI	YATR	3 cut(s)	217, 233, 280
FaqI	GGGAC	3 cut(s)	95, 241, 288
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	265
HaeIII	GGCC	2 cut(s)	8, 76
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	1 cut(s)	282
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	4 cut(s)	23, 39, 62, 119
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	255, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	28, 137
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	282
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	3 cut(s)	18, 101, 193
LweI	GCATC	2 cut(s)	242, 264
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	1 cut(s)	3
MluCI	AATT	1 cut(s)	302
MnlI	CCTC	2 cut(s)	19, 37
Mph1103I	ATGCAT	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	1 cut(s)	166
MspI	CCGG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	147
NaeI	GCCGGC	1 cut(s)	6
NdeII	GATC	1 cut(s)	23
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	2 cut(s)	212, 276
NsiI	ATGCAT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	183
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
PspCI	CACGTG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	212, 276
PspPI	GGNCC	3 cut(s)	19, 275, 289
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	3 cut(s)	19, 275, 289
SetI	ASST	4 cut(s)	90, 108, 125, 200
SfaNI	GCATC	2 cut(s)	242, 264
SinI	GGWCC	3 cut(s)	19, 275, 289
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	2, 272
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	166
Tru9I	TTAA	1 cut(s)	166
TscAI	CASTG	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	37, 119, 173, 236
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	3 cut(s)	19, 275, 289
XmnI	GAANNNNTTC	1 cut(s)	67
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.