Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029518.1

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Forward (+)

1754 .. 2835

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029518.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgaagcgccctcgaagccttgtagagccgagcgacaccatgtacggcctttttcgttccttccaagaaaacaacccgactgaacttatccacgtaccgcacctcccgagctctaactttgttcatggaagccgtcgacgtcggaaaactgcagtgtccggcacagctctcacttccttcatcgaagtctacccgagctctcacttccccatacagaacctcccgttcggagtgttcaagccaaaaccggcttcaacggctcgaccgggcgtggtcatcggacgattatgtgttggacttgtcagcaaccgcagccgccggtcccttcaacggtccggtcctcagaaactccgattgcttttatcagctactgagccaacattgcgtgacaatcaaagtttaaagcaggaatcacttattccattgagcgaggtggaaatgctgcttcctgcggcgattggggactatacagatttcttttcatcgatggatcacatacacgactgcgtggccaagcttagtgataagacagataacaaaattccgctgaactggtacctgggatttgaaagtcacagcacagaaatttattcctgtatctttgatcgtttacaaattgaacaagttttatttcgtgttaggttcgacccaccaattgcatatcatggacgagcttcgtcgattattatctctggaactgacattactcgacccaggtcaatcagagatgtatctcttgagacatttttacgtccaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

253

Amino Acids

28.59

Weight (kDa)

9.63

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	142
Acc65I	GGTACC	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	555
AccI	GTMKAC	2 cut(s)	136, 189
AciI	CCGC	5 cut(s)	98, 310, 316, 452, 545
AclWI	GGATC	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	2 cut(s)	540, 585
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	3 cut(s)	44, 96, 557
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	5 cut(s)	238, 255, 329, 569, 620
AjnI	CCWGG	2 cut(s)	558, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AluBI	AGCT	6 cut(s)	111, 167, 198, 368, 517, 674
AluI	AGCT	6 cut(s)	111, 167, 198, 368, 517, 674
Alw21I	GWGCWC	2 cut(s)	113, 200
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	498
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	2 cut(s)	106, 193
AoxI	GGCC	2 cut(s)	46, 510
ApeKI	GCWGC	2 cut(s)	312, 442
ApoI	RAATTY	2 cut(s)	540, 585
Asp718I	GGTACC	1 cut(s)	555
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	321, 333, 338
AsuC2I	CCSGG	1 cut(s)	267
AvaI	CYCGRG	2 cut(s)	106, 193
AvaII	GGWCC	3 cut(s)	321, 333, 338
BalI	TGGCCA	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	555
BanII	GRGCYC	2 cut(s)	113, 200
Bbv12I	GWGCWC	2 cut(s)	113, 200
BbvI	GCAGC	2 cut(s)	324, 429
BccI	CCATC	1 cut(s)	481
BceAI	ACGGC	3 cut(s)	61, 117, 273
BciT130I	CCWGG	2 cut(s)	560, 715
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	734
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	10
BisI	GCNGC	4 cut(s)	313, 316, 443, 453
BlsI	GCNGC	4 cut(s)	314, 317, 444, 454
Bme1390I	CCNGG	3 cut(s)	267, 560, 715
Bme18I	GGWCC	3 cut(s)	321, 333, 338
BmeT110I	CYCGRG	2 cut(s)	106, 193
BmgT120I	GGNCC	3 cut(s)	321, 333, 338
BmiI	GGNNCC	2 cut(s)	323, 557
BmrFI	CCNGG	3 cut(s)	267, 560, 715
BoxI	GACNNNNGTC	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	267
Bsa29I	ATCGAT	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	94
BsaBI	GATNNNNATC	1 cut(s)	686
BsaHI	GRCGYC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	559, 713
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse118I	RCCGGY	2 cut(s)	247, 318
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	686
BseBI	CCWGG	2 cut(s)	560, 715
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	2 cut(s)	559, 713
BseJI	GATNNNNATC	1 cut(s)	686
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	356, 363
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	324, 429
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	48, 512
BshNI	GGYRCC	1 cut(s)	555
BshVI	ATCGAT	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	2 cut(s)	113, 200
BsiHKCI	CYCGRG	2 cut(s)	106, 193
BsiSI	CCGG	5 cut(s)	159, 248, 266, 319, 336
BslFI	GGGAC	2 cut(s)	307, 476
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	307, 476
BsnI	GGCC	2 cut(s)	48, 512
BsoBI	CYCGRG	2 cut(s)	106, 193
Bsp1286I	GDGCHC	2 cut(s)	113, 200
Bsp143I	GATC	2 cut(s)	490, 604
BspACI	CCGC	5 cut(s)	98, 310, 316, 452, 545
BspANI	GGCC	2 cut(s)	48, 512
BspCNI	CTCAG	2 cut(s)	355, 364
BspDI	ATCGAT	1 cut(s)	485
BspLI	GGNNCC	2 cut(s)	323, 557
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	247, 318
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	2 cut(s)	247, 318
BssECI	CCNNGG	2 cut(s)	559, 713
BssMI	GATC	2 cut(s)	490, 604
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	2 cut(s)	560, 715
Bst4CI	ACNGT	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	342, 372, 518
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	493, 607
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	2 cut(s)	490, 604
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 257, 312, 382
BstNI	CCWGG	2 cut(s)	560, 715
BstPAI	GACNNNNGTC	1 cut(s)	715
BstSCI	CCNGG	3 cut(s)	265, 558, 713
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	324, 429
Bsu15I	ATCGAT	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	48, 512
BsuTUI	ATCGAT	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	247, 318
Cfr13I	GGNCC	3 cut(s)	321, 333, 338
ClaI	ATCGAT	1 cut(s)	485
CpoI	CGGWCCG	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	43, 95, 556
CspI	CGGWCCG	1 cut(s)	333
CviAII	CATG	3 cut(s)	40, 125, 665
CviQI	GTAC	3 cut(s)	43, 95, 556
DdeI	CTNAG	3 cut(s)	342, 372, 518
DpnI	GATC	2 cut(s)	492, 606
DpnII	GATC	2 cut(s)	490, 604
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	510
Ecl136II	GAGCTC	2 cut(s)	111, 198
Eco24I	GRGCYC	2 cut(s)	113, 200
Eco47I	GGWCC	3 cut(s)	321, 333, 338
Eco53kI	GAGCTC	2 cut(s)	111, 198
Eco88I	CYCGRG	2 cut(s)	106, 193
EcoICRI	GAGCTC	2 cut(s)	111, 198
EcoRII	CCWGG	2 cut(s)	558, 713
EcoT38I	GRGCYC	2 cut(s)	113, 200
FaeI	CATG	3 cut(s)	43, 128, 668
FaiI	YATR	8 cut(s)	41, 126, 212, 289, 468, 497, 661, 666
FaqI	GGGAC	2 cut(s)	307, 476
FatI	CATG	3 cut(s)	39, 124, 664
FblI	GTMKAC	2 cut(s)	136, 189
Fnu4HI	GCNGC	4 cut(s)	313, 316, 443, 453
FriOI	GRGCYC	2 cut(s)	113, 200
Fsp4HI	GCNGC	4 cut(s)	313, 316, 443, 453
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	313, 316, 443, 453
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	48, 512
HapII	CCGG	5 cut(s)	159, 248, 266, 319, 336
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	3 cut(s)	43, 128, 668
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	5 cut(s)	159, 248, 266, 319, 336
Hpy166II	GTNNAC	3 cut(s)	137, 190, 611
Hpy188I	TCNGA	6 cut(s)	144, 230, 281, 345, 353, 725
Hpy188III	TCNNGA	3 cut(s)	106, 693, 737
Hpy8I	GTNNAC	3 cut(s)	137, 190, 611
Hpy99I	CGWCG	4 cut(s)	138, 141, 144, 682
HpyAV	CCTTC	3 cut(s)	70, 187, 335
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4IV	ACGT	3 cut(s)	93, 139, 751
HpyCH4V	TGCA	2 cut(s)	152, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 257, 312, 382
HpyF3I	CTNAG	3 cut(s)	342, 372, 518
HpySE526I	ACGT	3 cut(s)	93, 139, 751
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	3 cut(s)	43, 128, 668
HspAI	GCGC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	490, 604
Lsp1109I	GCAGC	2 cut(s)	324, 429
MaeII	ACGT	3 cut(s)	93, 139, 751
MaeIII	GTNAC	2 cut(s)	386, 572
MalI	GATC	2 cut(s)	492, 606
MboI	GATC	2 cut(s)	490, 604
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	113, 200
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	4 cut(s)	540, 585, 615, 654
MluNI	TGGCCA	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	122, 274
MnlI	CCTC	5 cut(s)	21, 113, 230, 351, 424
Mox20I	TGGCCA	1 cut(s)	512
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	5 cut(s)	159, 248, 266, 319, 336
MspR9I	CCNGG	3 cut(s)	267, 560, 715
MunI	CAATTG	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	560, 715
MwoI	GCNNNNNNNGC	4 cut(s)	15, 257, 312, 382
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	490, 604
NlaIII	CATG	3 cut(s)	43, 128, 668
NlaIV	GGNNCC	2 cut(s)	323, 557
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	386, 572
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	4 cut(s)	314, 317, 444, 454
Ppu21I	YACGTR	1 cut(s)	94
PshAI	GACNNNNGTC	1 cut(s)	715
Psp124BI	GAGCTC	2 cut(s)	113, 200
Psp6I	CCWGG	2 cut(s)	558, 713
PspGI	CCWGG	2 cut(s)	558, 713
PspN4I	GGNNCC	2 cut(s)	323, 557
PspPI	GGNCC	3 cut(s)	321, 333, 338
PsrI	GAACNNNNNNTAC	2 cut(s)	688, 720
PstI	CTGCAG	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	44, 96, 557
RsaNI	GTAC	3 cut(s)	43, 95, 556
Rsr2I	CGGWCCG	1 cut(s)	333
RsrII	CGGWCCG	1 cut(s)	333
SacI	GAGCTC	2 cut(s)	113, 200
SalI	GTCGAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	4 cut(s)	313, 316, 443, 453
Sau3AI	GATC	2 cut(s)	490, 604
Sau96I	GGNCC	3 cut(s)	321, 333, 338
ScrFI	CCNGG	3 cut(s)	267, 560, 715
SduI	GDGCHC	2 cut(s)	113, 200
SfcI	CTRYAG	1 cut(s)	150
SgrDI	CGTCGACG	1 cut(s)	135
SinI	GGWCC	3 cut(s)	321, 333, 338
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	4 cut(s)	540, 585, 615, 654
SsiI	CCGC	5 cut(s)	98, 310, 316, 452, 545
SstI	GAGCTC	2 cut(s)	113, 200
StyD4I	CCNGG	3 cut(s)	265, 558, 713
TaaI	ACNGT	1 cut(s)	333
TaiI	ACGT	3 cut(s)	96, 142, 754
TaqI	TCGA	8 cut(s)	13, 136, 183, 262, 485, 645, 680, 709
TasI	AATT	4 cut(s)	540, 585, 615, 654
TauI	GCSGC	2 cut(s)	318, 455
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	386, 572
TseI	GCWGC	2 cut(s)	312, 442
Tsp45I	GTSAC	2 cut(s)	386, 572
TspDTI	ATGAA	4 cut(s)	17, 113, 169, 471
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	3 cut(s)	321, 333, 338
XapI	RAATTY	2 cut(s)	540, 585
XmiI	GTMKAC	2 cut(s)	136, 189
ZraI	GACGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.