Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005991.1

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

36743 .. 39938

Gene Structure 3196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005991.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgaagcgccgccctccgagcaacaccttgtatgacctttttcgttccttccgagaaaacaacccgattgatgacatccccttaccgaacctcccgagctctaacttcgttcatggaagtcgtcgacatcggaaaaactccgtgtccggcgtagctctcacttccttcatcgaagtcgacccgagctctcacttccccatacagaacctcccgttcggagtgttcaagccaaaaccggcttcaacggctcgaccgggcgtggccataggcgattatgtgttggacttgtcagcaatcgccgccgccggtctcttcaacggtccgatcctcagaaactccgattgcttttatcaggctgctgtagttggtcctggaaatgaattagggaatccggtggatgtgaatgaggcagcagatcacatttttggacttgtcttgatgaatggctggattgtgcagcacccccatctattgccctatgtcgctgaaaatatctctgaaagttatgacataacatttgagggaaatggctacaaagtagggttcgggaaatgctctggaaagattgttccacctccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

193

Amino Acids

20.97

Weight (kDa)

6.58

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	124, 177
AciI	CCGC	3 cut(s)	10, 300, 303
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	226, 243, 316
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	2 cut(s)	223, 255
AloI	GAACNNNNNNTCC	1 cut(s)	552
AluBI	AGCT	3 cut(s)	99, 155, 186
AluI	AGCT	3 cut(s)	99, 155, 186
Alw21I	GWGCWC	2 cut(s)	101, 188
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	2 cut(s)	94, 181
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	356, 410, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	320, 368
AsuC2I	CCSGG	1 cut(s)	255
AvaI	CYCGRG	2 cut(s)	94, 181
AvaII	GGWCC	2 cut(s)	320, 368
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	101, 188
Bbv12I	GWGCWC	2 cut(s)	101, 188
BbvI	GCAGC	3 cut(s)	343, 422, 469
BccI	CCATC	1 cut(s)	474
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	10
BisI	GCNGC	6 cut(s)	10, 300, 303, 357, 411, 458
BlsI	GCNGC	6 cut(s)	11, 301, 304, 358, 412, 459
Bme1390I	CCNGG	2 cut(s)	255, 372
Bme18I	GGWCC	2 cut(s)	320, 368
BmeT110I	CYCGRG	2 cut(s)	94, 181
BmgT120I	GGNCC	2 cut(s)	320, 368
BmrFI	CCNGG	2 cut(s)	255, 372
BpuMI	CCSGG	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 192, 222
Bse118I	RCCGGY	2 cut(s)	235, 305
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	75, 403
BseMII	CTCAG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	343, 422, 469
BsgI	GTGCAG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	101, 188
BsiHKCI	CYCGRG	2 cut(s)	94, 181
BsiSI	CCGG	5 cut(s)	147, 236, 254, 306, 392
BsmAI	GTCTC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	263
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	2 cut(s)	94, 181
Bsp1286I	GDGCHC	2 cut(s)	101, 188
Bsp143I	GATC	2 cut(s)	324, 415
BspACI	CCGC	3 cut(s)	10, 300, 303
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	235, 305
BssAI	RCCGGY	2 cut(s)	235, 305
BssMI	GATC	2 cut(s)	324, 415
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	75, 403
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	327, 418
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	324, 415
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 245, 299
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	253, 370
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	343, 422, 469
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	75, 403
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	235, 305
Cfr13I	GGNCC	2 cut(s)	320, 368
CpoI	CGGWCCG	1 cut(s)	320
CspI	CGGWCCG	1 cut(s)	320
CviAII	CATG	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	2 cut(s)	326, 417
DpnII	GATC	2 cut(s)	324, 415
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Ecl136II	GAGCTC	2 cut(s)	99, 186
Eco24I	GRGCYC	2 cut(s)	101, 188
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	320, 368
Eco53kI	GAGCTC	2 cut(s)	99, 186
Eco88I	CYCGRG	2 cut(s)	94, 181
EcoICRI	GAGCTC	2 cut(s)	99, 186
EcoRII	CCWGG	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	101, 188
FaeI	CATG	1 cut(s)	116
FaiI	YATR	8 cut(s)	33, 114, 200, 266, 276, 480, 507, 512
FatI	CATG	1 cut(s)	112
FblI	GTMKAC	2 cut(s)	124, 177
Fnu4HI	GCNGC	6 cut(s)	10, 300, 303, 357, 411, 458
FokI	GGATG	2 cut(s)	62, 410
FriOI	GRGCYC	2 cut(s)	101, 188
Fsp4HI	GCNGC	6 cut(s)	10, 300, 303, 357, 411, 458
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	6 cut(s)	10, 300, 303, 357, 411, 458
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	5 cut(s)	147, 236, 254, 306, 392
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	125, 178
HindII	GTYRAC	2 cut(s)	125, 178
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	5 cut(s)	147, 236, 254, 306, 392
Hpy166II	GTNNAC	2 cut(s)	125, 178
Hpy188I	TCNGA	8 cut(s)	18, 53, 132, 218, 324, 332, 340, 499
Hpy188III	TCNNGA	4 cut(s)	94, 436, 547, 558
Hpy8I	GTNNAC	2 cut(s)	125, 178
Hpy99I	CGWCG	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	58, 175
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 245, 299
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	324, 415
Lsp1109I	GCAGC	3 cut(s)	343, 422, 469
MalI	GATC	2 cut(s)	326, 417
MboI	GATC	2 cut(s)	324, 415
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	101, 188
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	1 cut(s)	380
MluNI	TGGCCA	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	24, 101, 218, 338, 400, 514
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	5 cut(s)	147, 236, 254, 306, 392
MspR9I	CCNGG	2 cut(s)	255, 372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	3 cut(s)	18, 245, 299
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	2 cut(s)	324, 415
NlaIII	CATG	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	11, 301, 304, 358, 412, 459
Psp124BI	GAGCTC	2 cut(s)	101, 188
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	320, 368
Rsr2I	CGGWCCG	1 cut(s)	320
RsrII	CGGWCCG	1 cut(s)	320
SacI	GAGCTC	2 cut(s)	101, 188
SalI	GTCGAC	2 cut(s)	123, 176
SatI	GCNGC	6 cut(s)	10, 300, 303, 357, 411, 458
Sau3AI	GATC	2 cut(s)	324, 415
Sau96I	GGNCC	2 cut(s)	320, 368
ScrFI	CCNGG	2 cut(s)	255, 372
SduI	GDGCHC	2 cut(s)	101, 188
SetI	ASST	8 cut(s)	29, 39, 93, 101, 157, 188, 210, 577
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	320, 368
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	3 cut(s)	10, 300, 303
SstI	GAGCTC	2 cut(s)	101, 188
StyD4I	CCNGG	2 cut(s)	253, 370
TaaI	ACNGT	1 cut(s)	320
TaqI	TCGA	4 cut(s)	124, 171, 177, 250
TasI	AATT	1 cut(s)	380
TauI	GCSGC	3 cut(s)	12, 302, 305
TfiI	GAWTC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	356, 410, 457
TspDTI	ATGAA	5 cut(s)	17, 101, 157, 393, 455
TspGWI	ACGGA	1 cut(s)	130
VpaK11BI	GGWCC	2 cut(s)	320, 368
XmiI	GTMKAC	2 cut(s)	124, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.