Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Reverse (-)

13685473 .. 13686201

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCGGCGGTGTGGTGTGGCAAGGCGGTGGCGTGGTGTTGCGTTGCGGCGGCGAGGTGGAGCGAGAGTATGGTGGCGGCGATGGCTGCCTGGGGCGCTAGCGGTCTTTACTAGGGAGAGTGGTGTTTGGGCAAGGCCTTTGGTCTTGGGCCCTTGTTGGTTTTGCTTTGTTTTCTGTTGGTTACGGTTTAGTTGTTCTATTTGTTTAGTTGTTTTGTTGACAATAAGTCTCTACCATGTGTGGGTAGGGCGAAGTGGGCCTTGTGCTGGTCTGTGCACCTTGTGTGCCTTGTCTGCTCTAGGTAGGCGGCGAGTTCCTTGCTTGGTCAAATGGTCGCTACCTCCTAGTGGCAGGGTGAAACTGAGTGTCACTGGATTTATTTTCCAGTGGCAACATGATGGGAAAGCTATGCGTATGGAAATTATGCTATGCTGTAATCGAGTTGCAGATCGAGTTATCTTTCCGTTGTGTCACCGCTGTGTCAAAGCAAATAGAGTCGCCAGTAGAGCGCTCTTTGCTAGTTGGTACCTAATTGAATACAGTTGTTTAGTAGAGACTCATGATAGTATTTCAGGATGTTCTCTAGTTGCCTATAGTAATCAGGGGTTTTGGCTCAATGTCCCCCCTTTGTATTCGACAGTTTCATTAATCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

219

Amino Acids

24.89

Weight (kDa)

10.21

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AciI	CCGC	9 cut(s)	4, 7, 25, 46, 49, 76, 101, 307, 475
AdeI	CACNNNGTG	1 cut(s)	282
AfaI	GTAC	1 cut(s)	527
AfeI	AGCGCT	1 cut(s)	510
AfiI	CCNNNNNNNGG	3 cut(s)	241, 266, 347
AgsI	TTSAA	1 cut(s)	536
AhdI	GACNNNNNGTC	1 cut(s)	225
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	477
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw21I	GWGCWC	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	233, 548
Alw44I	GTGCAC	1 cut(s)	274
Aor51HI	AGCGCT	1 cut(s)	510
AoxI	GGCC	3 cut(s)	134, 148, 257
ApaI	GGGCCC	1 cut(s)	152
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	85
AseI	ATTAAT	1 cut(s)	647
Asp718I	GGTACC	1 cut(s)	525
AspLEI	GCGC	2 cut(s)	97, 511
AspS9I	GGNCC	3 cut(s)	148, 149, 257
AsuHPI	GGTGA	2 cut(s)	367, 464
AsuNHI	GCTAGC	1 cut(s)	97
BaeGI	GKGCMC	2 cut(s)	152, 278
BanI	GGYRCC	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	75, 392
BcgI	CGANNNNNNTGC	2 cut(s)	300, 334
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	233, 548
BfaI	CTAG	6 cut(s)	98, 111, 299, 345, 519, 584
BfmI	CTRYAG	1 cut(s)	592
BfoI	RGCGCY	2 cut(s)	98, 512
BisI	GCNGC	6 cut(s)	5, 47, 50, 77, 86, 308
BlsI	GCNGC	6 cut(s)	6, 48, 51, 78, 87, 309
Bme1390I	CCNGG	1 cut(s)	90
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmgT120I	GGNCC	3 cut(s)	148, 149, 257
BmiI	GGNNCC	2 cut(s)	150, 527
BmrFI	CCNGG	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 266, 347
Bse1I	ACTGG	3 cut(s)	376, 385, 501
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	581
BseLI	CCNNNNNNNGG	3 cut(s)	241, 266, 347
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	3 cut(s)	376, 385, 501
BseSI	GKGCMC	2 cut(s)	152, 278
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	3 cut(s)	136, 150, 259
BshNI	GGYRCC	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	241, 266, 347
BsmAI	GTCTC	2 cut(s)	233, 548
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	136, 150, 259
Bsp120I	GGGCCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	152, 278
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	9 cut(s)	4, 7, 25, 46, 49, 76, 101, 307, 475
BspANI	GGCC	3 cut(s)	136, 150, 259
BspCNI	CTCAG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	150, 527
BspOI	GCTAGC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	376, 385, 501
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	3 cut(s)	186, 542, 640
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	362
BstF5I	GGATG	1 cut(s)	581
BstH2I	RGCGCY	2 cut(s)	98, 512
BstHHI	GCGC	2 cut(s)	97, 511
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	2 cut(s)	233, 548
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 85, 94, 256, 293, 506, 515
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	592
BstSLI	GKGCMC	2 cut(s)	152, 278
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	136, 150, 259
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	581
BtsIMutI	CAGTG	2 cut(s)	369, 392
Cac8I	GCNNGC	1 cut(s)	99
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	2 cut(s)	97, 511
Cfr13I	GGNCC	3 cut(s)	148, 149, 257
Csp6I	GTAC	1 cut(s)	526
CviAII	CATG	3 cut(s)	236, 395, 560
CviJI	RGCY	6 cut(s)	85, 136, 150, 259, 407, 613
CviKI_1	RGCY	6 cut(s)	85, 136, 150, 259, 407, 613
CviQI	GTAC	1 cut(s)	526
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	282
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	152
Eco47III	AGCGCT	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	152
FaeI	CATG	3 cut(s)	239, 398, 563
FaiI	YATR	9 cut(s)	70, 237, 396, 410, 416, 425, 430, 561, 594
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	235, 394, 559
Fnu4HI	GCNGC	6 cut(s)	5, 47, 50, 77, 86, 308
FokI	GGATG	1 cut(s)	588
FriOI	GRGCYC	1 cut(s)	152
Fsp4HI	GCNGC	6 cut(s)	5, 47, 50, 77, 86, 308
FspBI	CTAG	6 cut(s)	98, 111, 299, 345, 519, 584
GlaI	GCGC	2 cut(s)	96, 510
GluI	GCNGC	6 cut(s)	5, 47, 50, 77, 86, 308
HaeII	RGCGCY	2 cut(s)	98, 512
HaeIII	GGCC	3 cut(s)	136, 150, 259
HhaI	GCGC	2 cut(s)	97, 511
Hin1II	CATG	3 cut(s)	239, 398, 563
Hin6I	GCGC	2 cut(s)	95, 509
HinP1I	GCGC	2 cut(s)	95, 509
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	495, 556
HphI	GGTGA	2 cut(s)	367, 464
Hpy166II	GTNNAC	2 cut(s)	219, 276
Hpy188III	TCNNGA	2 cut(s)	560, 573
Hpy8I	GTNNAC	2 cut(s)	219, 276
HpyCH4III	ACNGT	3 cut(s)	186, 542, 640
HpyCH4V	TGCA	2 cut(s)	276, 446
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 85, 94, 256, 293, 506, 515
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	3 cut(s)	239, 398, 563
HspAI	GCGC	2 cut(s)	95, 509
KpnI	GGTACC	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	9 cut(s)	75, 102, 252, 337, 357, 398, 514, 558, 587
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	6 cut(s)	98, 111, 299, 345, 519, 584
MaeIII	GTNAC	3 cut(s)	180, 367, 470
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	152, 278
MluCI	AATT	2 cut(s)	420, 531
MlyI	GAGTC	2 cut(s)	504, 550
MnlI	CCTC	2 cut(s)	47, 351
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	477
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	7 cut(s)	82, 85, 94, 256, 293, 506, 515
NdeII	GATC	1 cut(s)	448
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	3 cut(s)	239, 398, 563
NlaIV	GGNNCC	2 cut(s)	150, 527
NmuCI	GTSAC	2 cut(s)	367, 470
OliI	CACNNNNGTG	1 cut(s)	477
PagI	TCATGA	1 cut(s)	559
PceI	AGGCCT	1 cut(s)	136
PkrI	GCNGC	6 cut(s)	6, 48, 51, 78, 87, 309
PleI	GAGTC	2 cut(s)	503, 550
PpsI	GAGTC	2 cut(s)	503, 550
PshBI	ATTAAT	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	150, 527
PspOMI	GGGCCC	1 cut(s)	148
PspPI	GGNCC	3 cut(s)	148, 149, 257
RsaI	GTAC	1 cut(s)	527
RsaNI	GTAC	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	6 cut(s)	5, 47, 50, 77, 86, 308
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	3 cut(s)	148, 149, 257
SchI	GAGTC	2 cut(s)	504, 550
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	152, 278
SetI	ASST	6 cut(s)	58, 281, 304, 343, 409, 531
SfcI	CTRYAG	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	477
Sse9I	AATT	2 cut(s)	420, 531
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	9 cut(s)	4, 7, 25, 46, 49, 76, 101, 307, 475
SspMI	CTAG	6 cut(s)	98, 111, 299, 345, 519, 584
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	186, 542, 640
TaqI	TCGA	3 cut(s)	439, 451, 635
TasI	AATT	2 cut(s)	420, 531
TauI	GCSGC	5 cut(s)	7, 49, 52, 79, 310
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TscAI	CASTG	2 cut(s)	376, 392
TseFI	GTSAC	2 cut(s)	367, 470
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	2 cut(s)	367, 470
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	2 cut(s)	376, 392
VneI	GTGCAC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	647
XspI	CTAG	6 cut(s)	98, 111, 299, 345, 519, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.