Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003811

Physical Location & Seq

Genomic Coordinates Forward (+)

95683894 .. 95687853

Gene Structure 3960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCTCTCACTTCCTTCATCGAAGTCGACCCGAGCTCTCACTTCCCCATACAGAACCTCCCGTTCGGAGTGTTCAAGCCCGAACCGGCTTCACCGCCTCGACCGGGCGTAGCCATCGGCGATTACGTCTTGGACTTGTCGGCTATCGCCGCCGCCGGCCTCTTCAACGGTCCGATCCTCAGTAACTCCGATTGCTTTCATCAGCCTAATCTGAACAAGTTCTTGGCCTTGGGACGACCTGCTTGGAAGGAAGCACGTGCCACACTTCAGAAGCTACTTTCATCTACTGAGCCAACATTGCGTGACAATGAAAGTTTAAAGCAGAAATCACTGATTCCATTGAGCAAGGTGGAAATGCTGGTTCCTATGGCGATTGGAGACTACACGGACTTCTTTTCATCGATGCATCACGCAAAGAACTGCGGGACCATGTTTCGTGGTCCGCAGAATGCAATTCAACCGAACTGGTTTCACCTGCCAATTGCATATCATGGACGAGCTTCGTCTATTGTTGTCTCTGGAACGGACATTATTCGACCCAGAGGTCAAGGAGCTCCTAGTGGAAACTCTCCACCATATTTTGGTCCCTCACTGAAACTAGATTTTGAGCTTGAAATGGCTGCTGTCGTCGGTCCGGGAAATGAATTAGGAAAGCCGGTGGATGTGAATGAGGCAGCAGATCATATTTTTGGACTTGTCTTGATGAATGACTGGAGTGCTAGAGATATCCAGGCATGGGAATATATTCCCCTTGGTCCTTTCCTTGGAAAAAGTTTTGGAACTACAATATCTCCTTGGATAGTGACACTCGAAGCTCTAGAACCATTTTCCTGTGATGCTCCCAAACAGGACCCCCATCCATTGCCCTATCTGGCTGAAAAGATCTCCAAAAATTATGACATAACGTTGGAGGTTCAAATTAAACCAGCTGGAGAGAAAGACTCATCTGTGGTCACAAAGAGTAATTTCAACCACTTATATTGGACAGTGACTCAGCAGCTAGCACACCATACTATCAATGGTTGCAACTTAAGGCCTGGAGATCTACTTGGAACTGGGACCATTAGTGGACCTGAGCCAGAATCTTATGGATGCTTGCTAGAGTTGACATGGAATGGACAAAAGCAGTTGTCATTAAATGGCGTTACTCGTAAATTCCTTGAAGATGGAGATGAAGTCATCATTACTGGTTTTAGCAAGGGAAATGGCTACAATGTTGGGTTCGGGACATGCTCCGGAAAGATTCTTCCCTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

419

Amino Acids

45.53

Weight (kDa)

5.67

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase_N	PF09298	18 - 122	5e-35	Fumarylacetoacetase N-terminal
FAA_hydrolase	PF01557	131 - 397	1.3e-39	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12050
fragaria_vesca	FvH4_3g01030
malus_domestica	MD10G1331100.v1.1
prunus_persica	Prupe.4G011100_v2.0.a1
pyrus_communis	pycom10g28060
rosa_chinensis	RchiOBHm_Chr3g0477951 RchiOBHm_Chr3g0484131 RchiOBHm_Chr5g0001571 RchiOBHm_Chr5g0003621
rosa_laevigata	RLG00000030938 RLG00000030942
rosa_multiflora	Rmu_co8093718.1_g000001 Rmu_sc0003749.1_g000003 Rmu_sc0005991.1_g000008 Rmu_sc0006320.1_g000011 Rmu_sc0029518.1_g000002 Rmu_sc0040965.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074840
rosa_rugosa	Rorug02G0302800 Rorug03G0164100 Rorug04G0391100
rosa_samantha	Rh3AG214900 Rh3AG258900 Rh3BG248500 Rh3CG242500 Rh3DG241900 Rh5AG012300 Rh5BG014900 Rh5BG015100 Rh5CG013300 Rh5DG012600 Rh5DG012700
rosa_wichuraiana	Rw3G019370 Rw5G001170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	483
AasI	GACNNNNNNGTC	1 cut(s)	543
Acc36I	ACCTGC	2 cut(s)	247, 483
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccI	GTMKAC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	1235
AciI	CCGC	5 cut(s)	95, 150, 153, 423, 443
AclI	AACGTT	1 cut(s)	905
AclWI	GGATC	1 cut(s)	169
AcsI	RAATTY	1 cut(s)	1154
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	257
AfiI	CCNNNNNNNGG	4 cut(s)	104, 581, 736, 764
AflII	CTTAAG	1 cut(s)	1030
AgsI	TTSAA	7 cut(s)	76, 166, 458, 614, 917, 970, 1163
AjnI	CCWGG	2 cut(s)	729, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	8 cut(s)	36, 274, 500, 554, 610, 815, 929, 1000
AluI	AGCT	8 cut(s)	36, 274, 500, 554, 610, 815, 929, 1000
Alw21I	GWGCWC	2 cut(s)	38, 556
Alw26I	GTCTC	2 cut(s)	372, 520
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	1235
AoxI	GGCC	3 cut(s)	157, 225, 1034
ApeKI	GCWGC	3 cut(s)	620, 674, 997
ApoI	RAATTY	1 cut(s)	1154
Asp700I	GAANNNNTTC	2 cut(s)	218, 744
AspS9I	GGNCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
AsuC2I	CCSGG	2 cut(s)	105, 636
AsuHPI	GGTGA	2 cut(s)	84, 464
AsuNHI	GCTAGC	1 cut(s)	1000
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
BanII	GRGCYC	2 cut(s)	38, 556
BbrPI	CACGTG	1 cut(s)	257
Bbv12I	GWGCWC	2 cut(s)	38, 556
BbvI	GCAGC	3 cut(s)	607, 686, 1009
BccI	CCATC	3 cut(s)	122, 864, 1160
BciT130I	CCWGG	2 cut(s)	731, 1038
BcnI	CCSGG	2 cut(s)	105, 636
BcoDI	GTCTC	2 cut(s)	372, 520
BfaI	CTAG	6 cut(s)	558, 599, 720, 818, 1001, 1100
BfrI	CTTAAG	1 cut(s)	1030
BfuAI	ACCTGC	2 cut(s)	247, 483
BglII	AGATCT	2 cut(s)	882, 1042
BisI	GCNGC	5 cut(s)	150, 153, 621, 675, 998
BlsI	GCNGC	5 cut(s)	151, 154, 622, 676, 999
Bme1390I	CCNGG	4 cut(s)	105, 636, 731, 1038
Bme18I	GGWCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
BmiI	GGNNCC	5 cut(s)	363, 427, 586, 852, 1060
BmrFI	CCNGG	4 cut(s)	105, 636, 731, 1038
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	4 cut(s)	393, 415, 826, 1082
BmtI	GCTAGC	1 cut(s)	1004
BmuI	ACTGGG	1 cut(s)	1065
BplI	GAGNNNNNCTC	2 cut(s)	926, 958
BpmI	CTGGAG	3 cut(s)	733, 951, 1059
Bpu10I	CCTNAGC	1 cut(s)	1074
BpuMI	CCSGG	2 cut(s)	105, 636
Bsa29I	ATCGAT	1 cut(s)	401
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	4 cut(s)	228, 751, 763, 794
BsaWI	WCCGGW	1 cut(s)	1235
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 72, 775, 805, 1161, 1191
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 581, 736, 764
Bse118I	RCCGGY	3 cut(s)	85, 155, 655
Bse1I	ACTGG	4 cut(s)	470, 716, 1060, 1192
Bse3DI	GCAATG	2 cut(s)	296, 860
BseAI	TCCGGA	1 cut(s)	1235
BseBI	CCWGG	2 cut(s)	731, 1038
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	4 cut(s)	228, 751, 763, 794
BseGI	GGATG	3 cut(s)	667, 856, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	104, 581, 736, 764
BseMI	GCAATG	2 cut(s)	296, 860
BseMII	CTCAG	4 cut(s)	193, 279, 1007, 1065
BseNI	ACTGG	4 cut(s)	470, 716, 1060, 1192
BseXI	GCAGC	3 cut(s)	607, 686, 1009
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	3 cut(s)	159, 227, 1036
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	38, 556
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	6 cut(s)	86, 104, 156, 635, 656, 1236
BslFI	GGGAC	5 cut(s)	246, 439, 570, 1072, 1240
BslI	CCNNNNNNNGG	4 cut(s)	104, 581, 736, 764
BsmAI	GTCTC	2 cut(s)	372, 520
BsmFI	GGGAC	5 cut(s)	246, 439, 570, 1072, 1240
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	159, 227, 1036
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	38, 556
Bsp13I	TCCGGA	1 cut(s)	1235
Bsp143I	GATC	4 cut(s)	174, 679, 882, 1042
BspACI	CCGC	5 cut(s)	95, 150, 153, 423, 443
BspANI	GGCC	3 cut(s)	159, 227, 1036
BspCNI	CTCAG	4 cut(s)	192, 280, 1006, 1066
BspDI	ATCGAT	1 cut(s)	401
BspEI	TCCGGA	1 cut(s)	1235
BspLI	GGNNCC	5 cut(s)	363, 427, 586, 852, 1060
BspMI	ACCTGC	2 cut(s)	247, 483
BspOI	GCTAGC	1 cut(s)	1004
BspPI	GGATC	1 cut(s)	169
BspTI	CTTAAG	1 cut(s)	1030
BsrDI	GCAATG	2 cut(s)	296, 860
BsrFI	RCCGGY	3 cut(s)	85, 155, 655
BsrI	ACTGG	4 cut(s)	470, 716, 1060, 1192
BssAI	RCCGGY	3 cut(s)	85, 155, 655
BssECI	CCNNGG	4 cut(s)	228, 751, 763, 794
BssMI	GATC	4 cut(s)	174, 679, 882, 1042
BssT1I	CCWWGG	4 cut(s)	228, 751, 763, 794
Bst2UI	CCWGG	2 cut(s)	731, 1038
Bst4CI	ACNGT	2 cut(s)	170, 988
Bst6I	CTCTTC	1 cut(s)	167
BstAFI	CTTAAG	1 cut(s)	1030
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	157, 1002, 1097
BstDEI	CTNAG	4 cut(s)	179, 288, 993, 1074
BstF5I	GGATG	3 cut(s)	667, 856, 1097
BstKTI	GATC	4 cut(s)	177, 682, 885, 1045
BstMAI	GTCTC	2 cut(s)	372, 520
BstMBI	GATC	4 cut(s)	174, 679, 882, 1042
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 298
BstNI	CCWGG	2 cut(s)	731, 1038
BstNSI	RCATGY	1 cut(s)	1233
BstSCI	CCNGG	4 cut(s)	103, 634, 729, 1036
BstV1I	GCAGC	3 cut(s)	607, 686, 1009
BstX2I	RGATCY	2 cut(s)	882, 1042
BstYI	RGATCY	2 cut(s)	882, 1042
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	159, 227, 1036
BsuTUI	ATCGAT	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	667, 856, 1097
BtsIMutI	CAGTG	3 cut(s)	329, 590, 993
BveI	ACCTGC	2 cut(s)	247, 483
Cac8I	GCNNGC	3 cut(s)	157, 1002, 1097
Cfr10I	RCCGGY	3 cut(s)	85, 155, 655
Cfr13I	GGNCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
ClaI	ATCGAT	1 cut(s)	401
CpoI	CGGWCCG	2 cut(s)	170, 632
CspCI	CAANNNNNGTGG	2 cut(s)	962, 997
CspI	CGGWCCG	2 cut(s)	170, 632
CviAII	CATG	5 cut(s)	430, 491, 735, 1110, 1230
DdeI	CTNAG	4 cut(s)	179, 288, 993, 1074
DpnI	GATC	4 cut(s)	176, 681, 884, 1044
DpnII	GATC	4 cut(s)	174, 679, 882, 1042
DraI	TTTAAA	1 cut(s)	318
DrdI	GACNNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	2 cut(s)	36, 554
Eco130I	CCWWGG	4 cut(s)	228, 751, 763, 794
Eco147I	AGGCCT	1 cut(s)	1036
Eco24I	GRGCYC	2 cut(s)	38, 556
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
Eco53kI	GAGCTC	2 cut(s)	36, 554
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	2 cut(s)	36, 554
EcoO109I	RGGNCCY	1 cut(s)	850
EcoRII	CCWGG	2 cut(s)	729, 1036
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	4 cut(s)	228, 751, 763, 794
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	38, 556
ErhI	CCWWGG	4 cut(s)	228, 751, 763, 794
FaeI	CATG	5 cut(s)	433, 494, 738, 1113, 1233
FaqI	GGGAC	5 cut(s)	246, 439, 570, 1072, 1240
FatI	CATG	5 cut(s)	429, 490, 734, 1109, 1229
FauI	CCCGC	1 cut(s)	416
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	150, 153, 621, 675, 998
FokI	GGATG	3 cut(s)	674, 843, 1104
FriOI	GRGCYC	2 cut(s)	38, 556
Fsp4HI	GCNGC	5 cut(s)	150, 153, 621, 675, 998
FspBI	CTAG	6 cut(s)	558, 599, 720, 818, 1001, 1100
GluI	GCNGC	5 cut(s)	150, 153, 621, 675, 998
GsuI	CTGGAG	3 cut(s)	733, 951, 1059
HaeIII	GGCC	3 cut(s)	159, 227, 1036
HapII	CCGG	6 cut(s)	86, 104, 156, 635, 656, 1236
Hin1II	CATG	5 cut(s)	433, 494, 738, 1113, 1233
HincII	GTYRAC	2 cut(s)	28, 1107
HindII	GTYRAC	2 cut(s)	28, 1107
HinfI	GANTC	5 cut(s)	334, 941, 991, 1082, 1243
HpaII	CCGG	6 cut(s)	86, 104, 156, 635, 656, 1236
HphI	GGTGA	2 cut(s)	84, 464
Hpy166II	GTNNAC	3 cut(s)	28, 1070, 1107
Hpy188I	TCNGA	5 cut(s)	68, 174, 190, 213, 270
Hpy188III	TCNNGA	5 cut(s)	519, 700, 818, 1225, 1236
Hpy8I	GTNNAC	3 cut(s)	28, 1070, 1107
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	2 cut(s)	25, 241
HpyCH4III	ACNGT	2 cut(s)	170, 988
HpyCH4IV	ACGT	3 cut(s)	126, 256, 905
HpyCH4V	TGCA	4 cut(s)	406, 452, 485, 1026
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 298
HpyF3I	CTNAG	4 cut(s)	179, 288, 993, 1074
HpySE526I	ACGT	3 cut(s)	126, 256, 905
Hsp92II	CATG	5 cut(s)	433, 494, 738, 1113, 1233
Kpn2I	TCCGGA	1 cut(s)	1235
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	174, 679, 882, 1042
LmnI	GCTCC	4 cut(s)	551, 559, 844, 1238
Lsp1109I	GCAGC	3 cut(s)	607, 686, 1009
LweI	GCATC	4 cut(s)	393, 415, 826, 1082
MaeI	CTAG	6 cut(s)	558, 599, 720, 818, 1001, 1100
MaeII	ACGT	3 cut(s)	126, 256, 905
MaeIII	GTNAC	6 cut(s)	182, 302, 802, 952, 988, 1144
MalI	GATC	4 cut(s)	176, 681, 884, 1044
MboI	GATC	4 cut(s)	174, 679, 882, 1042
MboII	GAAGA	3 cut(s)	154, 1175, 1238
MfeI	CAATTG	1 cut(s)	480
MflI	RGATCY	2 cut(s)	882, 1042
MhlI	GDGCHC	2 cut(s)	38, 556
MluCI	AATT	7 cut(s)	453, 480, 644, 892, 918, 964, 1154
MlyI	GAGTC	2 cut(s)	935, 985
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	8 cut(s)	68, 108, 170, 188, 536, 598, 664, 904
Mph1103I	ATGCAT	1 cut(s)	408
MroI	TCCGGA	1 cut(s)	1235
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	2 cut(s)	218, 744
MseI	TTAA	4 cut(s)	317, 921, 1031, 1136
MspA1I	CMGCKG	1 cut(s)	929
MspCI	CTTAAG	1 cut(s)	1030
MspI	CCGG	6 cut(s)	86, 104, 156, 635, 656, 1236
MspR9I	CCNGG	4 cut(s)	105, 636, 731, 1038
MunI	CAATTG	1 cut(s)	480
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	731, 1038
MwoI	GCNNNNNNNGC	2 cut(s)	149, 298
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	2 cut(s)	105, 636
NdeII	GATC	4 cut(s)	174, 679, 882, 1042
NgoMIV	GCCGGC	1 cut(s)	155
NheI	GCTAGC	1 cut(s)	1000
NlaIII	CATG	5 cut(s)	433, 494, 738, 1113, 1233
NlaIV	GGNNCC	5 cut(s)	363, 427, 586, 852, 1060
NmuCI	GTSAC	4 cut(s)	302, 802, 952, 988
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	1233
PaqCI	CACCTGC	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	1036
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	218, 744
PfeI	GAWTC	3 cut(s)	334, 1082, 1243
PflMI	CCANNNNNTGG	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	5 cut(s)	151, 154, 622, 676, 999
PleI	GAGTC	2 cut(s)	935, 985
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	2 cut(s)	935, 985
Ppu21I	YACGTR	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	850
Psp124BI	GAGCTC	2 cut(s)	38, 556
Psp1406I	AACGTT	1 cut(s)	905
Psp5II	RGGWCCY	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	729, 1036
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	729, 1036
PspN4I	GGNNCC	5 cut(s)	363, 427, 586, 852, 1060
PspPI	GGNCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
PspPPI	RGGWCCY	1 cut(s)	850
PsuI	RGATCY	2 cut(s)	882, 1042
PvuII	CAGCTG	1 cut(s)	929
Rsr2I	CGGWCCG	2 cut(s)	170, 632
RsrII	CGGWCCG	2 cut(s)	170, 632
SacI	GAGCTC	2 cut(s)	38, 556
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	317, 921, 1031, 1136
SatI	GCNGC	5 cut(s)	150, 153, 621, 675, 998
Sau3AI	GATC	4 cut(s)	174, 679, 882, 1042
Sau96I	GGNCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
SchI	GAGTC	2 cut(s)	935, 985
ScrFI	CCNGG	4 cut(s)	105, 636, 731, 1038
SduI	GDGCHC	2 cut(s)	38, 556
SfaNI	GCATC	4 cut(s)	393, 415, 826, 1082
SinI	GGWCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
SmlI	CTYRAG	1 cut(s)	1030
SmoI	CTYRAG	1 cut(s)	1030
Sse9I	AATT	7 cut(s)	453, 480, 644, 892, 918, 964, 1154
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	5 cut(s)	95, 150, 153, 423, 443
SspMI	CTAG	6 cut(s)	558, 599, 720, 818, 1001, 1100
SstI	GAGCTC	2 cut(s)	38, 556
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	4 cut(s)	103, 634, 729, 1036
StyI	CCWWGG	4 cut(s)	228, 751, 763, 794
TaaI	ACNGT	2 cut(s)	170, 988
TaiI	ACGT	3 cut(s)	129, 259, 908
TaqI	TCGA	6 cut(s)	21, 27, 100, 401, 535, 810
TaqII	GACCGA	1 cut(s)	620
TasI	AATT	7 cut(s)	453, 480, 644, 892, 918, 964, 1154
TauI	GCSGC	2 cut(s)	152, 155
TfiI	GAWTC	3 cut(s)	334, 1082, 1243
Tru1I	TTAA	4 cut(s)	317, 921, 1031, 1136
Tru9I	TTAA	4 cut(s)	317, 921, 1031, 1136
TscAI	CASTG	3 cut(s)	336, 597, 993
TseFI	GTSAC	4 cut(s)	302, 802, 952, 988
TseI	GCWGC	3 cut(s)	620, 674, 997
Tsp45I	GTSAC	4 cut(s)	302, 802, 952, 988
TspDTI	ATGAA	8 cut(s)	7, 188, 270, 324, 387, 657, 719, 1188
TspGWI	ACGGA	2 cut(s)	401, 539
TspRI	CASTG	3 cut(s)	336, 597, 993
Van91I	CCANNNNNTGG	1 cut(s)	581
Vha464I	CTTAAG	1 cut(s)	1030
VpaK11BI	GGWCC	9 cut(s)	170, 426, 440, 584, 632, 755, 850, 1059, 1070
XapI	RAATTY	1 cut(s)	1154
XbaI	TCTAGA	1 cut(s)	817
XceI	RCATGY	1 cut(s)	1233
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	2 cut(s)	218, 744
XspI	CTAG	6 cut(s)	558, 599, 720, 818, 1001, 1100
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.