AT1G12260
NAC Family

vnd4, emb2749, anac007 anac007 (arabidopsis nac 007)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4162826 .. 4165928
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12260.2

Sequence Viewer

Length: 1188 bp
ATGAATTCATTTTCCCACGTCCCTCCGGGTTTTAGATTTCACCCGACAGATGAAGAACTTGTAGACTACTACCTGAGGAAAAAAGTCGCATCGAAGAGAATAGAAATTGATTTCATAAAGGACATTGATCTTTACAAGATTGAGCCATGGGACCTTCAAGAGTTGTGCAAAATTGGGCATGAAGAGCAGAGTGATTGGTACTTCTTTAGCCATAAAGACAAGAAGTATCCCACAGGGACTCGAACCAATAGAGCAACAAAAGCAGGGTTTTGGAAAGCCACCGGAAGAGATAAGGCTATCTATTTGAGGCATAGTCTAATTGGCATGAGGAAAACACTTGTGTTTTACAAGGGAAGAGCCCCAAATGGACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAACGGAACTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAGAGATTGGCTGCAGTTAGACGAATGGGAGATTACGACTCATCCCCTTCACATTGGTACGATGATCAACTTTCTTTTATGGCCTCCGAGCTCGAGACAAACGGTCAACGACGGATTCTCCCCAATCATCATCAGCAGCAGCAGCACGAGCACCAACAACATATGCCATATGGCCTCAATGCATCTGCTTACGCTCTCAACAACCCTAACTTGCAATGCAAGCAAGAGCTAGAACTACACTACAACCACCTGGTACAACGAAATCATCTTCTTGATGAATCTCATTTATCGTTCCTCCAACTTCCTCAACTAGAAAGCCCTAAGATTCAACAAGATAACAGTAATTGCAACTCTCTTCCTTATGGAACAAGCAACATCGATAATAACTCGAGCCATAATGCTAACTTGCAGCAATCAAATATCGCGCATGAGGAACAATTGAATCAAGGAAATCAGAACTTCAGCTCTCTATACATGAACAGCGGCAACGAGCAAGTGATGGACCAAGTCACAGACTGGAGAGTTCTCGATAAATTTGTTGCTTCTCAGCTAAGCAACGAGGAGGCTGCCACAGCTTCTGCATCTATACAGAATAATGCCAAGGACACAAGCAATGCTGAGTACCAAGTTGATGAAGAAAAAGATCCGAAAAGGGCTTCAGACATGGGAGAAGAATATACTGCTTCTACTTCTTCGAGTTGTCAGATTGATCTATGGAAGTGA

Protein Analysis

395

Amino Acids

45.84

Weight (kDa)

5.83

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 8 - 135 7.9e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AccII CGCG 1 cut(s) 890
AciI CCGC 2 cut(s) 400, 948
AclWI GGATC 2 cut(s) 392, 1103
AcsI RAATTY 2 cut(s) 4, 998
AcuI CTGAAG 2 cut(s) 910, 1107
AfaI GTAC 4 cut(s) 200, 524, 720, 1088
AgsI TTSAA 4 cut(s) 158, 463, 794, 907
AhdI GACNNNNNGTC 1 cut(s) 567
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 714
AluBI AGCT 5 cut(s) 556, 694, 930, 1015, 1040
AluI AGCT 5 cut(s) 556, 694, 930, 1015, 1040
Alw21I GWGCWC 2 cut(s) 558, 618
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 2 cut(s) 392, 1103
AlwNI CAGNNNCTG 1 cut(s) 1043
Ama87I CYCGRG 2 cut(s) 557, 853
AoxI GGCC 2 cut(s) 546, 637
ApeKI GCWGC 6 cut(s) 476, 601, 604, 607, 874, 1031
ApoI RAATTY 2 cut(s) 4, 998
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 2 cut(s) 151, 967
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 557, 853
AvaII GGWCC 2 cut(s) 151, 967
AxyI CCTNAGG 2 cut(s) 74, 429
BanII GRGCYC 2 cut(s) 361, 558
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 558, 618
BbvI GCAGC 6 cut(s) 463, 613, 616, 619, 886, 1018
BccI CCATC 2 cut(s) 435, 958
BcgI CGANNNNNNTGC 2 cut(s) 1013, 1047
BciT130I CCWGG 1 cut(s) 716
BciVI GTATCC 1 cut(s) 237
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 2 cut(s) 695, 776
BfmI CTRYAG 1 cut(s) 477
BfuI GTATCC 1 cut(s) 237
BisI GCNGC 7 cut(s) 477, 602, 605, 608, 875, 949, 1032
BlpI GCTNAGC 1 cut(s) 1016
BlsI GCNGC 7 cut(s) 478, 603, 606, 609, 876, 950, 1033
Bme1390I CCNGG 2 cut(s) 27, 716
Bme18I GGWCC 2 cut(s) 151, 967
BmeRI GACNNNNNGTC 1 cut(s) 567
BmeT110I CYCGRG 2 cut(s) 557, 853
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 151, 967
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 2 cut(s) 27, 716
BmsI GCATC 3 cut(s) 98, 656, 1055
BoxI GACNNNNGTC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 1003
Bpu1102I GCTNAGC 1 cut(s) 1016
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 843
BsaJI CCNNGG 2 cut(s) 146, 1065
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bse1I ACTGG 1 cut(s) 986
Bse21I CCTNAGG 2 cut(s) 74, 429
Bse3DI GCAATG 2 cut(s) 686, 1084
BseBI CCWGG 1 cut(s) 716
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 2 cut(s) 146, 1065
BseGI GGATG 2 cut(s) 446, 506
BseMI GCAATG 2 cut(s) 686, 1084
BseMII CTCAG 4 cut(s) 65, 443, 1025, 1074
BseNI ACTGG 1 cut(s) 986
BseRI GAGGAG 2 cut(s) 417, 1040
BseXI GCAGC 6 cut(s) 463, 613, 616, 619, 886, 1018
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 2 cut(s) 548, 639
BshVI ATCGAT 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 558, 618
BsiHKCI CYCGRG 2 cut(s) 557, 853
BsiSI CCGG 2 cut(s) 26, 282
BslFI GGGAC 3 cut(s) 5, 164, 250
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 3 cut(s) 5, 164, 250
BsnI GGCC 2 cut(s) 548, 639
BsoBI CYCGRG 2 cut(s) 557, 853
Bsp1286I GDGCHC 3 cut(s) 361, 558, 618
Bsp143I GATC 5 cut(s) 127, 384, 529, 1108, 1174
Bsp1720I GCTNAGC 1 cut(s) 1016
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 2 cut(s) 400, 948
BspANI GGCC 2 cut(s) 548, 639
BspCNI CTCAG 4 cut(s) 66, 442, 1024, 1075
BspDI ATCGAT 1 cut(s) 843
BspFNI CGCG 1 cut(s) 890
BspLI GGNNCC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 2 cut(s) 392, 1103
BspQI GCTCTTC 2 cut(s) 177, 349
BsrDI GCAATG 2 cut(s) 686, 1084
BsrI ACTGG 1 cut(s) 986
BssECI CCNNGG 2 cut(s) 146, 1065
BssMI GATC 5 cut(s) 127, 384, 529, 1108, 1174
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 2 cut(s) 146, 1065
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 716
Bst4CI ACNGT 2 cut(s) 569, 806
Bst6I CTCTTC 6 cut(s) 89, 177, 280, 349, 461, 825
BstC8I GCNNGC 1 cut(s) 686
BstDEI CTNAG 7 cut(s) 74, 403, 429, 786, 1011, 1016, 1083
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 446, 506
BstFNI CGCG 1 cut(s) 890
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 5 cut(s) 130, 387, 532, 1111, 1177
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 5 cut(s) 127, 384, 529, 1108, 1174
BstMWI GCNNNNNNNGC 6 cut(s) 184, 260, 607, 613, 685, 1037
BstNI CCWGG 1 cut(s) 716
BstPAI GACNNNNGTC 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 25, 714
BstSFI CTRYAG 1 cut(s) 477
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 6 cut(s) 463, 613, 616, 619, 886, 1018
BstX2I RGATCY 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1108
Bsu15I ATCGAT 1 cut(s) 843
Bsu36I CCTNAGG 2 cut(s) 74, 429
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 548, 639
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 446, 506
Cac8I GCNNGC 1 cut(s) 686
CaiI CAGNNNCTG 1 cut(s) 1043
CfoI GCGC 1 cut(s) 892
Cfr13I GGNCC 2 cut(s) 151, 967
ClaI ATCGAT 1 cut(s) 843
CsiI ACCWGGT 1 cut(s) 714
Csp6I GTAC 4 cut(s) 199, 523, 719, 1087
CviAII CATG 7 cut(s) 147, 179, 325, 388, 893, 940, 1129
CviQI GTAC 4 cut(s) 199, 523, 719, 1087
DdeI CTNAG 7 cut(s) 74, 403, 429, 786, 1011, 1016, 1083
DpnI GATC 5 cut(s) 129, 386, 531, 1110, 1176
DpnII GATC 5 cut(s) 127, 384, 529, 1108, 1174
DriI GACNNNNNGTC 1 cut(s) 567
Eam1104I CTCTTC 6 cut(s) 89, 177, 280, 349, 461, 825
Eam1105I GACNNNNNGTC 1 cut(s) 567
EarI CTCTTC 6 cut(s) 89, 177, 280, 349, 461, 825
Ecl136II GAGCTC 1 cut(s) 556
Eco130I CCWWGG 2 cut(s) 146, 1065
Eco24I GRGCYC 2 cut(s) 361, 558
Eco47I GGWCC 2 cut(s) 151, 967
Eco53kI GAGCTC 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 910, 1107
Eco81I CCTNAGG 2 cut(s) 74, 429
Eco88I CYCGRG 2 cut(s) 557, 853
EcoICRI GAGCTC 1 cut(s) 556
EcoO109I RGGNCCY 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 714
EcoT14I CCWWGG 2 cut(s) 146, 1065
EcoT22I ATGCAT 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 361, 558
ErhI CCWWGG 2 cut(s) 146, 1065
FaeI CATG 7 cut(s) 150, 182, 328, 391, 896, 943, 1132
FaqI GGGAC 3 cut(s) 5, 164, 250
FatI CATG 7 cut(s) 146, 178, 324, 387, 892, 939, 1128
FauNDI CATATG 2 cut(s) 627, 634
FbaI TGATCA 1 cut(s) 529
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 7 cut(s) 477, 602, 605, 608, 875, 949, 1032
FokI GGATG 2 cut(s) 453, 493
FriOI GRGCYC 2 cut(s) 361, 558
Fsp4HI GCNGC 7 cut(s) 477, 602, 605, 608, 875, 949, 1032
FspBI CTAG 2 cut(s) 695, 776
GlaI GCGC 1 cut(s) 891
GluI GCNGC 7 cut(s) 477, 602, 605, 608, 875, 949, 1032
GsuI CTGGAG 1 cut(s) 1003
HaeIII GGCC 2 cut(s) 548, 639
HapII CCGG 2 cut(s) 26, 282
HhaI GCGC 1 cut(s) 892
Hin1II CATG 7 cut(s) 150, 182, 328, 391, 896, 943, 1132
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 1 cut(s) 572
HindII GTYRAC 1 cut(s) 572
HinfI GANTC 6 cut(s) 238, 503, 580, 743, 790, 907
HpaII CCGG 2 cut(s) 26, 282
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 64, 572
Hpy188I TCNGA 6 cut(s) 379, 553, 921, 1113, 1126, 1170
Hpy188III TCNNGA 6 cut(s) 158, 431, 463, 559, 737, 992
Hpy8I GTNNAC 2 cut(s) 64, 572
Hpy99I CGWCG 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 164, 431, 522
HpyCH4III ACNGT 2 cut(s) 569, 806
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 9 cut(s) 168, 391, 479, 647, 679, 684, 813, 874, 1046
HpyF10VI GCNNNNNNNGC 6 cut(s) 184, 260, 607, 613, 685, 1037
HpyF3I CTNAG 7 cut(s) 74, 403, 429, 786, 1011, 1016, 1083
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 7 cut(s) 150, 182, 328, 391, 896, 943, 1132
HspAI GCGC 1 cut(s) 890
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 5 cut(s) 127, 384, 529, 1108, 1174
LguI GCTCTTC 2 cut(s) 177, 349
LpnPI CCDG 9 cut(s) 39, 86, 219, 249, 295, 416, 701, 728, 967
Lsp1109I GCAGC 6 cut(s) 463, 613, 616, 619, 886, 1018
LweI GCATC 3 cut(s) 98, 656, 1055
MabI ACCWGGT 1 cut(s) 714
MaeI CTAG 2 cut(s) 695, 776
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 973
MalI GATC 5 cut(s) 129, 386, 531, 1110, 1176
MboI GATC 5 cut(s) 127, 384, 529, 1108, 1174
MfeI CAATTG 1 cut(s) 902
MflI RGATCY 1 cut(s) 1108
MhlI GDGCHC 3 cut(s) 361, 558, 618
MluCI AATT 7 cut(s) 4, 105, 171, 318, 808, 902, 998
MlyI GAGTC 2 cut(s) 232, 497
MmeI TCCRAC 1 cut(s) 787
Mph1103I ATGCAT 1 cut(s) 649
MspA1I CMGCKG 1 cut(s) 948
MspI CCGG 2 cut(s) 26, 282
MspR9I CCNGG 2 cut(s) 27, 716
MunI CAATTG 1 cut(s) 902
MvaI CCWGG 1 cut(s) 716
MvnI CGCG 1 cut(s) 890
MwoI GCNNNNNNNGC 6 cut(s) 184, 260, 607, 613, 685, 1037
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 146
NdeI CATATG 2 cut(s) 627, 634
NdeII GATC 5 cut(s) 127, 384, 529, 1108, 1174
NlaIII CATG 7 cut(s) 150, 182, 328, 391, 896, 943, 1132
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 649
PaeR7I CTCGAG 2 cut(s) 557, 853
PciSI GCTCTTC 2 cut(s) 177, 349
PfeI GAWTC 4 cut(s) 580, 743, 790, 907
PflFI GACNNNGTC 1 cut(s) 971
PkrI GCNGC 7 cut(s) 478, 603, 606, 609, 876, 950, 1033
PleI GAGTC 2 cut(s) 232, 497
PpsI GAGTC 2 cut(s) 232, 497
PpuMI RGGWCCY 1 cut(s) 151
PshAI GACNNNNGTC 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 714
PspGI CCWGG 1 cut(s) 714
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 151, 967
PspPPI RGGWCCY 1 cut(s) 151
PspXI VCTCGAGB 1 cut(s) 853
PstI CTGCAG 1 cut(s) 481
PstNI CAGNNNCTG 1 cut(s) 1043
PsuI RGATCY 1 cut(s) 1108
PsyI GACNNNGTC 1 cut(s) 971
RsaI GTAC 4 cut(s) 200, 524, 720, 1088
RsaNI GTAC 4 cut(s) 199, 523, 719, 1087
SacI GAGCTC 1 cut(s) 558
SapI GCTCTTC 2 cut(s) 177, 349
SatI GCNGC 7 cut(s) 477, 602, 605, 608, 875, 949, 1032
Sau3AI GATC 5 cut(s) 127, 384, 529, 1108, 1174
Sau96I GGNCC 2 cut(s) 151, 967
SchI GAGTC 2 cut(s) 232, 497
ScrFI CCNGG 2 cut(s) 27, 716
SduI GDGCHC 3 cut(s) 361, 558, 618
SetI ASST 9 cut(s) 21, 75, 156, 558, 696, 717, 932, 1017, 1042
SexAI ACCWGGT 1 cut(s) 714
SfaNI GCATC 3 cut(s) 98, 656, 1055
SfcI CTRYAG 1 cut(s) 477
Sfr274I CTCGAG 2 cut(s) 557, 853
SinI GGWCC 2 cut(s) 151, 967
SlaI CTCGAG 2 cut(s) 557, 853
SmlI CTYRAG 2 cut(s) 557, 853
SmoI CTYRAG 2 cut(s) 557, 853
Sse9I AATT 7 cut(s) 4, 105, 171, 318, 808, 902, 998
SsiI CCGC 2 cut(s) 400, 948
SspMI CTAG 2 cut(s) 695, 776
SstI GAGCTC 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 25, 714
StyI CCWWGG 2 cut(s) 146, 1065
TaaI ACNGT 2 cut(s) 569, 806
TaiI ACGT 1 cut(s) 21
TaqI TCGA 7 cut(s) 92, 241, 558, 843, 854, 993, 1160
TasI AATT 7 cut(s) 4, 105, 171, 318, 808, 902, 998
TauI GCSGC 1 cut(s) 951
TfiI GAWTC 4 cut(s) 580, 743, 790, 907
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 6 cut(s) 476, 601, 604, 607, 874, 1031
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 8 cut(s) 17, 66, 103, 195, 429, 756, 956, 1113
TspGWI ACGGA 2 cut(s) 435, 592
Tth111I GACNNNGTC 1 cut(s) 971
VpaK11BI GGWCC 2 cut(s) 151, 967
XapI RAATTY 2 cut(s) 4, 998
XhoI CTCGAG 2 cut(s) 557, 853
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 2 cut(s) 695, 776
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.