Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

8056946 .. 8058573

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g07440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAATACACTTTCATCACATGTACCCCCAGGCTTTCGATTCCGTCCCACAGATGAAGAACTTGTTGATTATTATCTCAGAAAGAAGATTGCTTTGAAACCGATTGATTTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCGTGGGATCTTGAAGACTTGTGCAAGATAGGAAGTGGTGATCAGAATGAATGGTACTTCTTTAGCCACAAAGATAAGAAGTACCCTACTGGAAGTCGTACAAATAGGGCAACGAAAGCCGGGTTTTGGAAAGCTACAGGAAGAGATAAGGCTATTTATAGAGGAGAAAAATTCCTCGTTGGGATGAGAAAAACCTTAGTCTTTTACAAAGGCCGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCATGAATATCGACTAGAAACTAATGAAAATGGAACTCCTCAGGCAAGTATGTTTCTATACCTTAAAAGTGAAATTTCTAACATCAAATATTGTTATGATTGTACCGTGCAGGAAGAAGGATGGGTTGTGTGTAGGGCGTTCAAGAAAAAGTTGGCAGCCGTGAGCAGAATGGGAGATTACGAGTCACCAGATTGCTATGATCAAGTCTCATTCCTGCCACAACTTGATAACCCTCCAAGGACATCAATGTCCCGCACTTATGCATCACAAAATGAGCAGCAGCTACACTATTCACAATGCAAGCAAGAGTTTGATTTGCTGTATAACATGCCACATCATCATCATGACTGTTTTTTCCAGCTCCCTCAATTGGAAAGCCCCAAAGTTCCTCATCAGTCAGCTACCCCATATGGTAATTGTGTTATGCAGTCTTCCACACTCACACAAGAGGAGCAATTTGCGCAATACATCTCCCAGCAAAATCTGTTCAAATCATCGTCGTCGCCATCAGTACATGCGCTTGACAACAACAATGATTATCTGCAAGCTGTTGATCAAGTGAAGGATTGGCGAGCCCTTGACAAGTATGTTGCGTCACAGCTCAGCCATGACCAACAAGATGCTTCCAAGGAAGTAACAAATTACTCTCATGCAGAGGAAATATTTCATGTGGCTGAACACATTAATATGCTTGCCAATGACGCTTCCAGAAGGCCAGACAATAATAATAACATTGGACAGGACTATGCCTCAACATCAACCTCTACTTTCCAAATTGATCTCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

396

Amino Acids

45.87

Weight (kDa)

6.07

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 137	4.3e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AasI	GACNNNNNNGTC	1 cut(s)	643
Acc16I	TGCGCA	1 cut(s)	858
AciI	CCGC	1 cut(s)	649
AclWI	GGATC	2 cut(s)	162, 398
AcsI	RAATTY	2 cut(s)	317, 468
AfaI	GTAC	6 cut(s)	24, 203, 230, 247, 499, 909
AfiI	CCNNNNNNNGG	2 cut(s)	273, 766
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	97, 161, 538, 886
AjnI	CCWGG	1 cut(s)	28
AluBI	AGCT	6 cut(s)	281, 679, 757, 797, 944, 997
AluI	AGCT	6 cut(s)	281, 679, 757, 797, 944, 997
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	162, 398
AoxI	GGCC	2 cut(s)	358, 1109
ApeKI	GCWGC	3 cut(s)	551, 673, 676
ApoI	RAATTY	2 cut(s)	317, 468
AseI	ATTAAT	1 cut(s)	1080
Asp700I	GAANNNNTTC	1 cut(s)	1059
AspLEI	GCGC	2 cut(s)	859, 916
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	197, 573
AxyI	CCTNAGG	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	973
BbsI	GAAGAC	2 cut(s)	168, 819
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	3 cut(s)	563, 685, 688
BccI	CCATC	2 cut(s)	510, 910
BceAI	ACGGC	3 cut(s)	133, 345, 539
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BciT130I	CCWGG	1 cut(s)	30
BclI	TGATCA	3 cut(s)	187, 595, 949
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	3 cut(s)	552, 674, 677
BlpI	GCTNAGC	1 cut(s)	998
BlsI	GCNGC	3 cut(s)	553, 675, 678
Bme1390I	CCNGG	2 cut(s)	30, 268
BmrFI	CCNGG	2 cut(s)	30, 268
BmsI	GCATC	2 cut(s)	668, 1006
BoxI	GACNNNNGTC	1 cut(s)	379
BpiI	GAAGAC	2 cut(s)	168, 819
Bpu1102I	GCTNAGC	1 cut(s)	998
BpuMI	CCSGG	1 cut(s)	268
BsaBI	GATNNNNATC	2 cut(s)	72, 129
BsaJI	CCNNGG	4 cut(s)	28, 149, 632, 1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 766
Bse1I	ACTGG	1 cut(s)	241
Bse21I	CCTNAGG	1 cut(s)	435
Bse8I	GATNNNNATC	2 cut(s)	72, 129
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	28, 149, 632, 1023
BseGI	GGATG	2 cut(s)	336, 521
BseJI	GATNNNNATC	2 cut(s)	72, 129
BseLI	CCNNNNNNNGG	2 cut(s)	273, 766
BseMII	CTCAG	3 cut(s)	91, 449, 1012
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	3 cut(s)	324, 423, 860
BseXI	GCAGC	3 cut(s)	563, 685, 688
BseYI	CCCAGC	1 cut(s)	870
BsgI	GTGCAG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	360, 1111
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	2 cut(s)	30, 631
BslI	CCNNNNNNNGG	2 cut(s)	273, 766
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	2 cut(s)	30, 631
BsnI	GGCC	2 cut(s)	360, 1111
Bsp1286I	GDGCHC	2 cut(s)	367, 973
Bsp143I	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
Bsp1720I	GCTNAGC	1 cut(s)	998
BspACI	CCGC	1 cut(s)	649
BspANI	GGCC	2 cut(s)	360, 1111
BspCNI	CTCAG	3 cut(s)	90, 448, 1011
BspHI	TCATGA	1 cut(s)	739
BspPI	GGATC	2 cut(s)	162, 398
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	4 cut(s)	28, 149, 632, 1023
BssMI	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
BssT1I	CCWWGG	2 cut(s)	632, 1023
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	502, 746
Bst6I	CTCTTC	1 cut(s)	283
BstC8I	GCNNGC	4 cut(s)	698, 942, 969, 1089
BstDEI	CTNAG	4 cut(s)	77, 343, 435, 998
BstDSI	CCRYGG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	336, 521
BstHHI	GCGC	2 cut(s)	859, 916
BstKTI	GATC	7 cut(s)	133, 157, 190, 393, 598, 952, 1177
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 856, 1097
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	3 cut(s)	23, 727, 914
BstPAI	GACNNNNGTC	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	28, 266
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	563, 685, 688
BstV2I	GAAGAC	2 cut(s)	168, 819
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	360, 1111
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	336, 521
Cac8I	GCNNGC	4 cut(s)	698, 942, 969, 1089
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	859, 916
CseI	GACGC	2 cut(s)	978, 1106
Csp6I	GTAC	6 cut(s)	23, 202, 229, 246, 498, 908
CviAII	CATG	9 cut(s)	20, 394, 398, 724, 740, 911, 1004, 1046, 1064
CviQI	GTAC	6 cut(s)	23, 202, 229, 246, 498, 908
DdeI	CTNAG	4 cut(s)	77, 343, 435, 998
DpnI	GATC	7 cut(s)	132, 156, 189, 392, 597, 951, 1176
DpnII	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	643
DseDI	GACNNNNNNGTC	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	632, 1023
Eco24I	GRGCYC	1 cut(s)	973
Eco81I	CCTNAGG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	632, 1023
EcoT22I	ATGCAT	2 cut(s)	399, 661
EcoT38I	GRGCYC	1 cut(s)	973
ErhI	CCWWGG	2 cut(s)	632, 1023
FaeI	CATG	9 cut(s)	23, 397, 401, 727, 743, 914, 1007, 1049, 1067
FaqI	GGGAC	2 cut(s)	30, 631
FatI	CATG	9 cut(s)	19, 393, 397, 723, 739, 910, 1003, 1045, 1063
FauI	CCCGC	1 cut(s)	656
FauNDI	CATATG	1 cut(s)	805
FbaI	TGATCA	3 cut(s)	187, 595, 949
Fnu4HI	GCNGC	3 cut(s)	552, 674, 677
FokI	GGATG	2 cut(s)	343, 528
FriOI	GRGCYC	1 cut(s)	973
Fsp4HI	GCNGC	3 cut(s)	552, 674, 677
FspBI	CTAG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	2 cut(s)	858, 915
GluI	GCNGC	3 cut(s)	552, 674, 677
GsaI	CCCAGC	1 cut(s)	874
HaeIII	GGCC	2 cut(s)	360, 1111
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	978, 1106
HhaI	GCGC	2 cut(s)	859, 916
Hin1II	CATG	9 cut(s)	23, 397, 401, 727, 743, 914, 1007, 1049, 1067
Hin6I	GCGC	2 cut(s)	857, 914
HinP1I	GCGC	2 cut(s)	857, 914
HinfI	GANTC	2 cut(s)	39, 578
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	197, 573
Hpy188I	TCNGA	4 cut(s)	80, 122, 192, 385
Hpy188III	TCNNGA	5 cut(s)	158, 538, 740, 1104, 1180
Hpy99I	CGWCG	2 cut(s)	898, 901
HpyAV	CCTTC	3 cut(s)	506, 952, 1101
HpyCH4III	ACNGT	2 cut(s)	502, 746
HpyCH4V	TGCA	8 cut(s)	171, 397, 505, 659, 696, 823, 940, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 856, 1097
HpyF3I	CTNAG	4 cut(s)	77, 343, 435, 998
Hsp92II	CATG	9 cut(s)	23, 397, 401, 727, 743, 914, 1007, 1049, 1067
HspAI	GCGC	2 cut(s)	857, 914
Ksp22I	TGATCA	3 cut(s)	187, 595, 949
Kzo9I	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
LmnI	GCTCC	3 cut(s)	370, 762, 847
Lsp1109I	GCAGC	3 cut(s)	563, 685, 688
LweI	GCATC	2 cut(s)	668, 1006
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	3 cut(s)	579, 990, 1030
MalI	GATC	7 cut(s)	132, 156, 189, 392, 597, 951, 1176
MboI	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
MboII	GAAGA	6 cut(s)	68, 97, 173, 300, 521, 819
MfeI	CAATTG	1 cut(s)	764
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	367, 973
MluCI	AATT	7 cut(s)	317, 468, 764, 811, 851, 1036, 1170
MlyI	GAGTC	1 cut(s)	587
Mph1103I	ATGCAT	2 cut(s)	399, 661
MroXI	GAANNNNTTC	1 cut(s)	1059
MseI	TTAA	2 cut(s)	459, 1080
MslI	CAYNNNNRTG	2 cut(s)	738, 1082
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	2 cut(s)	30, 268
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	263, 856, 1097
NciI	CCSGG	1 cut(s)	268
NdeI	CATATG	1 cut(s)	805
NdeII	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
NlaIII	CATG	9 cut(s)	23, 397, 401, 727, 743, 914, 1007, 1049, 1067
NmuCI	GTSAC	2 cut(s)	579, 990
NsbI	TGCGCA	1 cut(s)	858
NsiI	ATGCAT	2 cut(s)	399, 661
NspI	RCATGY	3 cut(s)	23, 727, 914
PagI	TCATGA	1 cut(s)	739
PciI	ACATGT	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	1059
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	553, 675, 678
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PscI	ACATGT	1 cut(s)	19
PshAI	GACNNNNGTC	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	1080
PsiI	TTATAA	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	870
PspGI	CCWGG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	6 cut(s)	24, 203, 230, 247, 499, 909
RsaNI	GTAC	6 cut(s)	23, 202, 229, 246, 498, 908
RseI	CAYNNNNRTG	2 cut(s)	738, 1082
SaqAI	TTAA	2 cut(s)	459, 1080
SatI	GCNGC	3 cut(s)	552, 674, 677
Sau3AI	GATC	7 cut(s)	130, 154, 187, 390, 595, 949, 1174
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	2 cut(s)	30, 268
SduI	GDGCHC	2 cut(s)	367, 973
SetI	ASST	9 cut(s)	283, 344, 459, 681, 759, 799, 946, 999, 1160
SfaNI	GCATC	2 cut(s)	668, 1006
SfcI	CTRYAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	738, 1082
Sse9I	AATT	7 cut(s)	317, 468, 764, 811, 851, 1036, 1170
SsiI	CCGC	1 cut(s)	649
SspI	AATATT	2 cut(s)	485, 1059
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	2 cut(s)	28, 266
StyI	CCWWGG	2 cut(s)	632, 1023
TaaI	ACNGT	2 cut(s)	502, 746
TaqI	TCGA	2 cut(s)	37, 406
TasI	AATT	7 cut(s)	317, 468, 764, 811, 851, 1036, 1170
TatI	WGTACW	1 cut(s)	907
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	459, 1080
Tru9I	TTAA	2 cut(s)	459, 1080
TseFI	GTSAC	2 cut(s)	579, 990
TseI	GCWGC	3 cut(s)	551, 673, 676
Tsp45I	GTSAC	2 cut(s)	579, 990
TspDTI	ATGAA	6 cut(s)	17, 69, 210, 414, 435, 1052
TspGWI	ACGGA	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	1080
XapI	RAATTY	2 cut(s)	317, 468
XceI	RCATGY	3 cut(s)	23, 727, 914
XmnI	GAANNNNTTC	1 cut(s)	1059
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	2 cut(s)	399, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.