Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

24815722 .. 24817459

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1117000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTGTTTTTTTATTGGTCTGAATGTGTTCATATTTGAAATTATAATGCAGGTTTTTCATCATTATCCGCAGGTGAAGAATATGAATACGCTTTCATCACATGTACCCCCAGGCTTTCGATTCCGTCCCACAGATGAAGAACTTGTTGATTATTATCTCAGAAAGAAGATTGCTTCGAAACTGATTGATTTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCGTGGGATCTTGAAGACTTGTGCAAGATAGGAAGTGGTGATCAGAATGAATGGTACTTCTTTAGCCACAAAGATAAGAAGTACCCTACTGGAAGTCGTACAAATAGGGCAACGAAAGCCGGGTTTTGGAAAGCTACAGGAAGAGATAAGGCTATTTATAGAGGAGAAAAATTCCTCGTTGGGATGAGAAAGACCTTAGTCTTTTACAAAGGCCGTGCTCCTAATGGACAGAAGTCAGATTGGATCATGCATGAATATCGACTAGAAACTAGAGAAAATGGAACTCCTCAGGCAAAAGGATGGGCTGTGTGTAGGGTGTTCAAGAAAAAGTTGGCAGCCGTGAGCAGAATGGGAGATTACGTGTCACCAGATTGCTATGATCAAGTCTCATTCCTGCCACAACTTGATAACCCTCCAAGGACATCAATGTCCCGCACTTATGCATCGCAAAATGAGCAGCAGCTACACTATTCACAATGCAAGAAAGAGTTTGATTTGCAGTACAACATGCCACATCATCATCATGACTCTTTTCTCCAGCTCCCTCAATTGGAAAGCCCCAAAGTTCCTCATCAGTCAGCTACCCCATATGGTAATTGTGCTATGCAGTCTTCCACACTCACACAAGAGGAGCAATTTGCGCAATACATCTCCCAGCAAAATATGTTCAAATCATCGTCATCGCCATCGGTACATGCGCTTGACAACAACAATGATTATCTGGAAGCTGTTGATCAAGTGAAGGATTGGCGAGCCCTTGACAAGTATGTTGCGTCACAGCTCAGCCATGACCAGCAAGATGCTTCCAAGAAAGTAACAAATTACTCTCATGCAGAGGAAATATTTCATGTGGCTGAACACATTAATATGCTTGCCAATGACGCATCCAGAAGGCGAGACAATAATAATAACATTGGACAGGACTATGCCTCAATATCAACCTCTACTTTCCAAATTGATCTCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

400

Amino Acids

46.44

Weight (kDa)

7.68

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	36 - 164	1.1e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	44, 219
AarI	CACCTGC	1 cut(s)	61
AasI	GACNNNNNNGTC	1 cut(s)	655
Acc16I	TGCGCA	1 cut(s)	870
Acc36I	ACCTGC	2 cut(s)	40, 61
AciI	CCGC	2 cut(s)	68, 661
AclWI	GGATC	2 cut(s)	243, 479
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	6 cut(s)	105, 284, 311, 328, 731, 921
AfiI	CCNNNNNNNGG	2 cut(s)	354, 778
AflIII	ACRYGT	2 cut(s)	100, 588
AgsI	TTSAA	4 cut(s)	38, 242, 550, 898
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	6 cut(s)	362, 691, 769, 809, 956, 1009
AluI	AGCT	6 cut(s)	362, 691, 769, 809, 956, 1009
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	2 cut(s)	619, 1119
AlwI	GGATC	2 cut(s)	243, 479
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	563, 685, 688
ApoI	RAATTY	1 cut(s)	398
AseI	ATTAAT	1 cut(s)	1092
Asp700I	GAANNNNTTC	2 cut(s)	26, 1071
AspLEI	GCGC	2 cut(s)	871, 928
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	3 cut(s)	85, 278, 585
AsuII	TTCGAA	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	516
BanII	GRGCYC	1 cut(s)	985
BbsI	GAAGAC	2 cut(s)	249, 831
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	575, 697, 700
BccI	CCATC	2 cut(s)	522, 922
BceAI	ACGGC	3 cut(s)	214, 426, 551
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	3 cut(s)	268, 607, 961
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	619, 1119
BfaI	CTAG	2 cut(s)	491, 498
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	40, 61
BisI	GCNGC	3 cut(s)	564, 686, 689
BlpI	GCTNAGC	1 cut(s)	1010
BlsI	GCNGC	3 cut(s)	565, 687, 690
Bme1390I	CCNGG	2 cut(s)	111, 349
BmrFI	CCNGG	2 cut(s)	111, 349
BmsI	GCATC	3 cut(s)	680, 1018, 1121
BoxI	GACNNNNGTC	2 cut(s)	425, 460
BpiI	GAAGAC	2 cut(s)	249, 831
BpmI	CTGGAG	1 cut(s)	749
Bpu1102I	GCTNAGC	1 cut(s)	1010
Bpu14I	TTCGAA	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	349
BsaAI	YACGTR	1 cut(s)	589
BsaBI	GATNNNNATC	2 cut(s)	153, 210
BsaJI	CCNNGG	3 cut(s)	109, 230, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bsc4I	CCNNNNNNNGG	2 cut(s)	354, 778
Bse1I	ACTGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	516
Bse8I	GATNNNNATC	2 cut(s)	153, 210
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	109, 230, 644
BseGI	GGATG	3 cut(s)	417, 533, 1112
BseJI	GATNNNNATC	2 cut(s)	153, 210
BseLI	CCNNNNNNNGG	2 cut(s)	354, 778
BseMII	CTCAG	3 cut(s)	172, 530, 1024
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	3 cut(s)	405, 504, 872
BseXI	GCAGC	3 cut(s)	575, 697, 700
BseYI	CCCAGC	1 cut(s)	882
BshFI	GGCC	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	111, 643
BslI	CCNNNNNNNGG	2 cut(s)	354, 778
BsmAI	GTCTC	2 cut(s)	619, 1119
BsmFI	GGGAC	2 cut(s)	111, 643
BsnI	GGCC	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	2 cut(s)	448, 985
Bsp143I	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1010
BspACI	CCGC	2 cut(s)	68, 661
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	171, 529, 1023
BspHI	TCATGA	1 cut(s)	751
BspMI	ACCTGC	2 cut(s)	40, 61
BspPI	GGATC	2 cut(s)	243, 479
BspT104I	TTCGAA	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	3 cut(s)	109, 230, 644
BssMI	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
BssT1I	CCWWGG	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	589
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	981, 1101
BstDEI	CTNAG	4 cut(s)	158, 424, 516, 1010
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	417, 533, 1112
BstHHI	GCGC	2 cut(s)	871, 928
BstKTI	GATC	7 cut(s)	214, 238, 271, 474, 610, 964, 1189
BstMAI	GTCTC	2 cut(s)	619, 1119
BstMBI	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 682, 868, 1109
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	3 cut(s)	104, 739, 926
BstPAI	GACNNNNGTC	2 cut(s)	425, 460
BstSCI	CCNGG	2 cut(s)	109, 347
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	575, 697, 700
BstV2I	GAAGAC	2 cut(s)	249, 831
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	230
BtgZI	GCGATG	2 cut(s)	657, 894
BtsCI	GGATG	3 cut(s)	417, 533, 1112
BveI	ACCTGC	2 cut(s)	40, 61
Cac8I	GCNNGC	2 cut(s)	981, 1101
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	2 cut(s)	871, 928
CseI	GACGC	2 cut(s)	990, 1118
Csp6I	GTAC	6 cut(s)	104, 283, 310, 327, 730, 920
CviAII	CATG	9 cut(s)	101, 475, 479, 736, 752, 923, 1016, 1058, 1076
CviQI	GTAC	6 cut(s)	104, 283, 310, 327, 730, 920
DdeI	CTNAG	4 cut(s)	158, 424, 516, 1010
DpnI	GATC	7 cut(s)	213, 237, 270, 473, 609, 963, 1188
DpnII	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	985
Eco81I	CCTNAGG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	644
EcoT22I	ATGCAT	2 cut(s)	480, 673
EcoT38I	GRGCYC	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	9 cut(s)	104, 478, 482, 739, 755, 926, 1019, 1061, 1079
FaqI	GGGAC	2 cut(s)	111, 643
FatI	CATG	9 cut(s)	100, 474, 478, 735, 751, 922, 1015, 1057, 1075
FauI	CCCGC	1 cut(s)	668
FauNDI	CATATG	1 cut(s)	817
FbaI	TGATCA	3 cut(s)	268, 607, 961
Fnu4HI	GCNGC	3 cut(s)	564, 686, 689
FokI	GGATG	3 cut(s)	424, 540, 1099
FriOI	GRGCYC	1 cut(s)	985
Fsp4HI	GCNGC	3 cut(s)	564, 686, 689
FspBI	CTAG	2 cut(s)	491, 498
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	2 cut(s)	870, 927
GluI	GCNGC	3 cut(s)	564, 686, 689
GsaI	CCCAGC	1 cut(s)	886
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	990, 1118
HhaI	GCGC	2 cut(s)	871, 928
Hin1II	CATG	9 cut(s)	104, 478, 482, 739, 755, 926, 1019, 1061, 1079
Hin6I	GCGC	2 cut(s)	869, 926
HinP1I	GCGC	2 cut(s)	869, 926
HinfI	GANTC	2 cut(s)	120, 755
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	85, 278, 585
Hpy188I	TCNGA	5 cut(s)	21, 161, 203, 273, 466
Hpy188III	TCNNGA	6 cut(s)	239, 550, 752, 950, 1116, 1192
HpyAV	CCTTC	2 cut(s)	964, 1113
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	8 cut(s)	49, 252, 478, 671, 708, 727, 835, 1061
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 682, 868, 1109
HpyF3I	CTNAG	4 cut(s)	158, 424, 516, 1010
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	9 cut(s)	104, 478, 482, 739, 755, 926, 1019, 1061, 1079
HspAI	GCGC	2 cut(s)	869, 926
Ksp22I	TGATCA	3 cut(s)	268, 607, 961
Kzo9I	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
LmnI	GCTCC	3 cut(s)	451, 774, 859
Lsp1109I	GCAGC	3 cut(s)	575, 697, 700
LweI	GCATC	3 cut(s)	680, 1018, 1121
MaeI	CTAG	2 cut(s)	491, 498
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	3 cut(s)	591, 1002, 1042
MalI	GATC	7 cut(s)	213, 237, 270, 473, 609, 963, 1188
MboI	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
MboII	GAAGA	6 cut(s)	88, 149, 178, 254, 381, 831
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	448, 985
MluCI	AATT	7 cut(s)	39, 398, 776, 823, 863, 1048, 1182
MlyI	GAGTC	1 cut(s)	749
Mph1103I	ATGCAT	2 cut(s)	480, 673
MroXI	GAANNNNTTC	2 cut(s)	26, 1071
MseI	TTAA	1 cut(s)	1092
MslI	CAYNNNNRTG	2 cut(s)	750, 1094
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	111, 349
MunI	CAATTG	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	344, 682, 868, 1109
NciI	CCSGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
NlaIII	CATG	9 cut(s)	104, 478, 482, 739, 755, 926, 1019, 1061, 1079
NmuCI	GTSAC	2 cut(s)	591, 1002
NsbI	TGCGCA	1 cut(s)	870
NsiI	ATGCAT	2 cut(s)	480, 673
NspI	RCATGY	3 cut(s)	104, 739, 926
NspV	TTCGAA	1 cut(s)	176
PagI	TCATGA	1 cut(s)	751
PaqCI	CACCTGC	1 cut(s)	61
PciI	ACATGT	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	26, 1071
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	565, 687, 690
PleI	GAGTC	1 cut(s)	749
PpsI	GAGTC	1 cut(s)	749
Ppu21I	YACGTR	1 cut(s)	589
PscI	ACATGT	1 cut(s)	100
PshAI	GACNNNNGTC	2 cut(s)	425, 460
PshBI	ATTAAT	1 cut(s)	1092
PsiI	TTATAA	2 cut(s)	44, 219
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	6 cut(s)	105, 284, 311, 328, 731, 921
RsaNI	GTAC	6 cut(s)	104, 283, 310, 327, 730, 920
RseI	CAYNNNNRTG	2 cut(s)	750, 1094
SaqAI	TTAA	1 cut(s)	1092
SatI	GCNGC	3 cut(s)	564, 686, 689
Sau3AI	GATC	7 cut(s)	211, 235, 268, 471, 607, 961, 1186
SchI	GAGTC	1 cut(s)	749
ScrFI	CCNGG	2 cut(s)	111, 349
SduI	GDGCHC	2 cut(s)	448, 985
SfaNI	GCATC	3 cut(s)	680, 1018, 1121
SfcI	CTRYAG	1 cut(s)	363
SfuI	TTCGAA	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	750, 1094
Sse9I	AATT	7 cut(s)	39, 398, 776, 823, 863, 1048, 1182
SsiI	CCGC	2 cut(s)	68, 661
SspI	AATATT	1 cut(s)	1071
SspMI	CTAG	2 cut(s)	491, 498
StyD4I	CCNGG	2 cut(s)	109, 347
StyI	CCWWGG	1 cut(s)	644
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	118, 176, 487
TasI	AATT	7 cut(s)	39, 398, 776, 823, 863, 1048, 1182
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	1092
Tru9I	TTAA	1 cut(s)	1092
TseFI	GTSAC	2 cut(s)	591, 1002
TseI	GCWGC	3 cut(s)	563, 685, 688
Tsp45I	GTSAC	2 cut(s)	591, 1002
TspDTI	ATGAA	8 cut(s)	19, 47, 84, 98, 150, 291, 495, 1064
TspGWI	ACGGA	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	1092
XapI	RAATTY	1 cut(s)	398
XceI	RCATGY	3 cut(s)	104, 739, 926
XmnI	GAANNNNTTC	2 cut(s)	26, 1071
XspI	CTAG	2 cut(s)	491, 498
Zsp2I	ATGCAT	2 cut(s)	480, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.