Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

19849055 .. 19850167

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTACATATGCATAACAAAAAACAGAGGTCATGGAATCGATTTTCGCCTTCTCCAGGCAGCCCACATTTGGATGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAACGATTGGCAACAGTAAGGAGAATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCCGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATCATATCATCACCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAATGCTATGCCTGTGCCTCCCCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTTCTCAATATGGCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCCATCTTCGACATTCAGGCCAGATGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

257

Amino Acids

29.59

Weight (kDa)

5.72

Isoelectric Point (pI)

74.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AciI	CCGC	1 cut(s)	729
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	563
AfaI	GTAC	2 cut(s)	308, 666
AfiI	CCNNNNNNNGG	2 cut(s)	56, 70
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	696, 728
AluBI	AGCT	4 cut(s)	265, 352, 580, 602
AluI	AGCT	4 cut(s)	265, 352, 580, 602
AlwI	GGATC	1 cut(s)	641
AoxI	GGCC	2 cut(s)	446, 698
ApeKI	GCWGC	2 cut(s)	60, 463
ApoI	RAATTY	1 cut(s)	563
AsuHPI	GGTGA	6 cut(s)	141, 149, 212, 251, 492, 668
BbvI	GCAGC	2 cut(s)	72, 475
BccI	CCATC	3 cut(s)	78, 339, 439
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	4 cut(s)	292, 397, 489, 532
BfaI	CTAG	1 cut(s)	557
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	3 cut(s)	61, 464, 729
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	3 cut(s)	62, 465, 730
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	172, 682
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	407, 581
BoxI	GACNNNNGTC	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	581
Bsa29I	ATCGAT	1 cut(s)	40
BsaJI	CCNNGG	4 cut(s)	166, 200, 372, 606
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 70
BseBI	CCWGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	40
BseDI	CCNNGG	4 cut(s)	166, 200, 372, 606
BseGI	GGATG	5 cut(s)	79, 89, 331, 422, 737
BseLI	CCNNNNNNNGG	2 cut(s)	56, 70
BseMII	CTCAG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	163, 487
BseXI	GCAGC	2 cut(s)	72, 475
BshFI	GGCC	2 cut(s)	448, 700
BshVI	ATCGAT	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	56, 70
BsnI	GGCC	2 cut(s)	448, 700
Bsp143I	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	448, 700
BspCNI	CTCAG	1 cut(s)	594
BspDI	ATCGAT	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	172, 682
BspPI	GGATC	1 cut(s)	641
BssECI	CCNNGG	4 cut(s)	166, 200, 372, 606
BssMI	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
BssT1I	CCWWGG	4 cut(s)	166, 200, 372, 606
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	124, 524
BstDEI	CTNAG	1 cut(s)	581
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	5 cut(s)	79, 89, 331, 422, 737
BstKTI	GATC	6 cut(s)	295, 400, 492, 535, 649, 763
BstMBI	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 454, 463
BstNI	CCWGG	1 cut(s)	57
BstPAI	GACNNNNGTC	1 cut(s)	522
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	72, 475
Bsu15I	ATCGAT	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	448, 700
BsuTUI	ATCGAT	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	79, 89, 331, 422, 737
CciI	TCATGA	1 cut(s)	486
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	307, 665
CviAII	CATG	6 cut(s)	33, 153, 181, 422, 487, 587
CviQI	GTAC	2 cut(s)	307, 665
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	6 cut(s)	294, 399, 491, 534, 648, 762
DpnII	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
Eco130I	CCWWGG	4 cut(s)	166, 200, 372, 606
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	166, 200, 372, 606
EcoT22I	ATGCAT	1 cut(s)	15
ErhI	CCWWGG	4 cut(s)	166, 200, 372, 606
FaeI	CATG	6 cut(s)	36, 156, 184, 425, 490, 590
FatI	CATG	6 cut(s)	32, 152, 180, 421, 486, 586
FauNDI	CATATG	2 cut(s)	9, 669
FbaI	TGATCA	4 cut(s)	292, 397, 489, 532
Fnu4HI	GCNGC	3 cut(s)	61, 464, 729
FokI	GGATG	5 cut(s)	86, 96, 318, 429, 724
Fsp4HI	GCNGC	3 cut(s)	61, 464, 729
FspBI	CTAG	1 cut(s)	557
GluI	GCNGC	3 cut(s)	61, 464, 729
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	448, 700
Hin1II	CATG	6 cut(s)	36, 156, 184, 425, 490, 590
HindIII	AAGCTT	1 cut(s)	600
HinfI	GANTC	8 cut(s)	37, 146, 194, 214, 338, 472, 481, 689
HphI	GGTGA	6 cut(s)	141, 149, 212, 251, 492, 668
Hpy188III	TCNNGA	5 cut(s)	106, 335, 487, 527, 557
HpyAV	CCTTC	2 cut(s)	60, 74
HpyCH4III	ACNGT	2 cut(s)	124, 524
HpyCH4V	TGCA	5 cut(s)	13, 279, 304, 463, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 454, 463
HpyF3I	CTNAG	1 cut(s)	581
Hsp92II	CATG	6 cut(s)	36, 156, 184, 425, 490, 590
Ksp22I	TGATCA	4 cut(s)	292, 397, 489, 532
Kzo9I	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
LmnI	GCTCC	3 cut(s)	176, 357, 680
Lsp1109I	GCAGC	2 cut(s)	72, 475
LweI	GCATC	2 cut(s)	407, 581
MaeI	CTAG	1 cut(s)	557
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	6 cut(s)	294, 399, 491, 534, 648, 762
MboI	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
MboII	GAAGA	2 cut(s)	89, 426
MfeI	CAATTG	1 cut(s)	458
MluCI	AATT	5 cut(s)	359, 458, 563, 622, 756
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	8 cut(s)	21, 184, 228, 336, 366, 508, 690, 742
Mph1103I	ATGCAT	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	10, 454, 463
NdeI	CATATG	2 cut(s)	9, 669
NdeII	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
NlaIII	CATG	6 cut(s)	36, 156, 184, 425, 490, 590
NlaIV	GGNNCC	2 cut(s)	172, 682
NmuCI	GTSAC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	15
PagI	TCATGA	1 cut(s)	486
PfeI	GAWTC	7 cut(s)	37, 194, 214, 338, 472, 481, 689
PkrI	GCNGC	3 cut(s)	62, 465, 730
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	172, 682
RsaI	GTAC	2 cut(s)	308, 666
RsaNI	GTAC	2 cut(s)	307, 665
RseI	CAYNNNNRTG	1 cut(s)	72
SatI	GCNGC	3 cut(s)	61, 464, 729
Sau3AI	GATC	6 cut(s)	292, 397, 489, 532, 646, 760
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	6 cut(s)	32, 267, 354, 378, 582, 604
SfaNI	GCATC	2 cut(s)	407, 581
SfcI	CTRYAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	72
Sse9I	AATT	5 cut(s)	359, 458, 563, 622, 756
SsiI	CCGC	1 cut(s)	729
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	166, 200, 372, 606
TaaI	ACNGT	2 cut(s)	124, 524
TaqI	TCGA	2 cut(s)	40, 437
TasI	AATT	5 cut(s)	359, 458, 563, 622, 756
TatI	WGTACW	2 cut(s)	306, 664
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	7 cut(s)	37, 194, 214, 338, 472, 481, 689
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	2 cut(s)	60, 463
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	6 cut(s)	90, 169, 485, 648, 675, 686
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	1 cut(s)	563
XbaI	TCTAGA	1 cut(s)	556
XspI	CTAG	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.