FvH4_5g00351
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008211
Physical Location & Seq
Reverse (-)
245567 .. 246264
698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00351.t1

Sequence Viewer

Length: 504 bp
ATGTCCCTTACCACTCTTAGGAGGCGTTTGAAGAACATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCGACAGATGAAGAACTTGTTGATTATTATCTCAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGTAGTGAAGATCAGAATGAGTGGTACTTTTTCAGTCACAAAGATAAAAAGTACCCAACCGGAACTCGCACAAATAGGGCAACCAAAGCTGGGTTTTGGAAAGCTACCGGAAGAGATAAAGCTATTTACATCAGGCACAACCTAGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCATGAGTATCGACTTGAAACTAATGAAAATGGACCTCCTCAGGCAAGTTTTTTACAACTCAATCTTCTCAGTCTATAA

Protein Analysis

168

Amino Acids

19.76

Weight (kDa)

9.63

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 147 1.3e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AasI GACNNNNNNGTC 1 cut(s) 146
AclWI GGATC 2 cut(s) 195, 428
AfaI GTAC 3 cut(s) 57, 236, 263
AfiI CCNNNNNNNGG 2 cut(s) 18, 300
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 4 cut(s) 31, 129, 194, 443
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 3 cut(s) 299, 314, 332
AluI AGCT 3 cut(s) 299, 314, 332
Alw21I GWGCWC 1 cut(s) 397
AlwI GGATC 2 cut(s) 195, 428
Ama87I CYCGRG 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 458
AsuC2I CCSGG 2 cut(s) 62, 63
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 397
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BcnI CCSGG 2 cut(s) 62, 63
BfaI CTAG 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 62, 63
Bme18I GGWCC 1 cut(s) 458
BmeT110I CYCGRG 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 458
BmrFI CCNGG 2 cut(s) 62, 63
BoxI GACNNNNGTC 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpuMI CCSGG 2 cut(s) 62, 63
BsaBI GATNNNNATC 2 cut(s) 105, 162
BsaJI CCNNGG 3 cut(s) 60, 61, 182
BsaWI WCCGGW 2 cut(s) 269, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 300
Bse21I CCTNAGG 1 cut(s) 465
Bse8I GATNNNNATC 2 cut(s) 105, 162
BseDI CCNNGG 3 cut(s) 60, 61, 182
BseJI GATNNNNATC 2 cut(s) 105, 162
BseLI CCNNNNNNNGG 2 cut(s) 18, 300
BseMII CTCAG 2 cut(s) 124, 479
BseRI GAGGAG 1 cut(s) 453
BseYI CCCAGC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 3 cut(s) 62, 270, 318
BslI CCNNNNNNNGG 2 cut(s) 18, 300
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 5 cut(s) 135, 163, 187, 220, 420
Bsp19I CCATGG 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 123, 478
BspPI GGATC 2 cut(s) 195, 428
BssECI CCNNGG 3 cut(s) 60, 61, 182
BssMI GATC 5 cut(s) 135, 163, 187, 220, 420
BssT1I CCWWGG 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 316
BstDEI CTNAG 4 cut(s) 17, 110, 465, 494
BstDSI CCRYGG 1 cut(s) 182
BstKTI GATC 5 cut(s) 138, 166, 190, 223, 423
BstMBI GATC 5 cut(s) 135, 163, 187, 220, 420
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 56
BstPAI GACNNNNGTC 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 60, 61
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 182
BtrI CACGTC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 458
Cfr9I CCCGGG 1 cut(s) 61
Csp6I GTAC 3 cut(s) 56, 235, 262
CviAII CATG 6 cut(s) 37, 53, 183, 361, 424, 428
CviJI RGCY 5 cut(s) 66, 181, 299, 314, 332
CviKI_1 RGCY 5 cut(s) 66, 181, 299, 314, 332
CviQI GTAC 3 cut(s) 56, 235, 262
DdeI CTNAG 4 cut(s) 17, 110, 465, 494
DpnI GATC 5 cut(s) 137, 165, 189, 222, 422
DpnII GATC 5 cut(s) 135, 163, 187, 220, 420
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 6 cut(s) 40, 56, 186, 364, 427, 431
FaiI YATR 8 cut(s) 38, 54, 171, 184, 362, 425, 429, 502
FatI CATG 6 cut(s) 36, 52, 182, 360, 423, 427
FspBI CTAG 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 303
HapII CCGG 3 cut(s) 62, 270, 318
Hin1II CATG 6 cut(s) 40, 56, 186, 364, 427, 431
HinfI GANTC 2 cut(s) 72, 370
HpaII CCGG 3 cut(s) 62, 270, 318
Hpy188I TCNGA 4 cut(s) 113, 155, 225, 415
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 2 cut(s) 204, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 4 cut(s) 17, 110, 465, 494
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 6 cut(s) 40, 56, 186, 364, 427, 431
Kzo9I GATC 5 cut(s) 135, 163, 187, 220, 420
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 7 cut(s) 75, 283, 285, 328, 331, 359, 452
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 245
MalI GATC 5 cut(s) 137, 165, 189, 222, 422
MboI GATC 5 cut(s) 135, 163, 187, 220, 420
MboII GAAGA 8 cut(s) 43, 101, 130, 145, 182, 230, 333, 482
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 3 cut(s) 15, 471, 474
Mph1103I ATGCAT 1 cut(s) 429
MspI CCGG 3 cut(s) 62, 270, 318
MspR9I CCNGG 2 cut(s) 62, 63
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 2 cut(s) 62, 63
NcoI CCATGG 1 cut(s) 182
NdeII GATC 5 cut(s) 135, 163, 187, 220, 420
NlaIII CATG 6 cut(s) 40, 56, 186, 364, 427, 431
NmuCI GTSAC 1 cut(s) 245
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 56
PciI ACATGT 1 cut(s) 52
PfeI GAWTC 1 cut(s) 72
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PscI ACATGT 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 409
PsiI TTATAA 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 458
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 57, 236, 263
RsaNI GTAC 3 cut(s) 56, 235, 262
Sau3AI GATC 5 cut(s) 135, 163, 187, 220, 420
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 2 cut(s) 62, 63
SduI GDGCHC 1 cut(s) 397
SetI ASST 9 cut(s) 47, 144, 214, 301, 316, 334, 354, 394, 463
SinI GGWCC 1 cut(s) 458
SmaI CCCGGG 1 cut(s) 63
Sse9I AATT 1 cut(s) 197
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 60, 61
StyI CCWWGG 1 cut(s) 182
TaiI ACGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 138, 436
TasI AATT 1 cut(s) 197
TfiI GAWTC 1 cut(s) 72
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 53, 102, 465
TspMI CCCGGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 458
XceI RCATGY 1 cut(s) 56
XmaI CCCGGG 1 cut(s) 61
XspI CTAG 1 cut(s) 353
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.