Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

49053746 .. 49059522

Gene Structure 5777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGTGTTAATTTTTAAAAATGGTGTTACGAGCGCCTCAAAAGAAAAGGAAAACTTGGTACGAGGGCTAAAGATTGGATTTGGAGTTGCGGTTGATCTTCCCTATTGTTTGAAGAACATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGGGACTGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCCACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGGTTTTCAAGAAACGATTGGCAACAGTAAGGAGAATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCGGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATCATCATATCATCACCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAATGCTATGCCTGTGCCTCCTCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGGCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCCATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAAAAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAATATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

391

Amino Acids

45.12

Weight (kDa)

6.76

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	47 - 166	2.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	252, 915
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	2 cut(s)	89, 1131
AclWI	GGATC	3 cut(s)	276, 494, 1043
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	6 cut(s)	60, 138, 302, 329, 710, 1068
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	112, 210, 275, 505
AjiI	CACGTC	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1098, 1130
AluBI	AGCT	6 cut(s)	365, 398, 667, 754, 982, 1004
AluI	AGCT	6 cut(s)	365, 398, 667, 754, 982, 1004
Alw21I	GWGCWC	1 cut(s)	463
AlwI	GGATC	3 cut(s)	276, 494, 1043
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	848, 1100
ApeKI	GCWGC	1 cut(s)	865
ApoI	RAATTY	1 cut(s)	965
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	2 cut(s)	143, 144
AsuHPI	GGTGA	6 cut(s)	540, 548, 611, 653, 894, 1070
AvaI	CYCGRG	1 cut(s)	142
BauI	CACGAG	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	1 cut(s)	877
BccI	CCATC	1 cut(s)	841
BclI	TGATCA	4 cut(s)	694, 799, 891, 934
BcnI	CCSGG	2 cut(s)	143, 144
BfaI	CTAG	1 cut(s)	959
BfmI	CTRYAG	2 cut(s)	162, 749
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	866, 1131
BlpI	GCTNAGC	1 cut(s)	983
BlsI	GCNGC	2 cut(s)	867, 1132
Bme1390I	CCNGG	2 cut(s)	143, 144
BmeT110I	CYCGRG	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	458
BmiI	GGNNCC	2 cut(s)	571, 1084
BmrFI	CCNGG	2 cut(s)	143, 144
BmsI	GCATC	2 cut(s)	809, 983
BoxI	GACNNNNGTC	2 cut(s)	475, 924
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
Bpu1102I	GCTNAGC	1 cut(s)	983
BpuMI	CCSGG	2 cut(s)	143, 144
BsaBI	GATNNNNATC	2 cut(s)	186, 243
BsaJI	CCNNGG	7 cut(s)	141, 142, 263, 565, 599, 774, 1008
BsaXI	ACNNNNNCTCC	6 cut(s)	75, 105, 520, 550, 554, 584
Bse1I	ACTGG	1 cut(s)	388
Bse8I	GATNNNNATC	2 cut(s)	186, 243
BseDI	CCNNGG	7 cut(s)	141, 142, 263, 565, 599, 774, 1008
BseGI	GGATG	2 cut(s)	733, 824
BseJI	GATNNNNATC	2 cut(s)	186, 243
BseMII	CTCAG	1 cut(s)	997
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	4 cut(s)	562, 720, 869, 889
BseXI	GCAGC	1 cut(s)	877
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	2 cut(s)	850, 1102
BsiHKAI	GWGCWC	1 cut(s)	463
BsiHKCI	CYCGRG	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	143, 584
BslFI	GGGAC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	850, 1102
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1720I	GCTNAGC	1 cut(s)	983
Bsp19I	CCATGG	1 cut(s)	263
BspACI	CCGC	2 cut(s)	89, 1131
BspANI	GGCC	2 cut(s)	850, 1102
BspCNI	CTCAG	1 cut(s)	996
BspHI	TCATGA	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	571, 1084
BspPI	GGATC	3 cut(s)	276, 494, 1043
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	7 cut(s)	141, 142, 263, 565, 599, 774, 1008
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	5 cut(s)	263, 565, 599, 774, 1008
Bst2BI	CACGAG	1 cut(s)	494
Bst4CI	ACNGT	2 cut(s)	523, 926
Bst6I	CTCTTC	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	191, 983
BstDSI	CCRYGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	733, 824
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 856, 865
BstNSI	RCATGY	1 cut(s)	137
BstPAI	GACNNNNGTC	2 cut(s)	475, 924
BstSCI	CCNGG	2 cut(s)	141, 142
BstSFI	CTRYAG	2 cut(s)	162, 749
BstV1I	GCAGC	1 cut(s)	877
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	850, 1102
BtgI	CCRYGG	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	733, 824
CciI	TCATGA	1 cut(s)	888
CfoI	GCGC	1 cut(s)	35
Cfr9I	CCCGGG	1 cut(s)	142
Csp6I	GTAC	6 cut(s)	59, 137, 301, 328, 709, 1067
CviQI	GTAC	6 cut(s)	59, 137, 301, 328, 709, 1067
DdeI	CTNAG	2 cut(s)	191, 983
DraI	TTTAAA	1 cut(s)	16
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco130I	CCWWGG	5 cut(s)	263, 565, 599, 774, 1008
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	142
EcoT14I	CCWWGG	5 cut(s)	263, 565, 599, 774, 1008
ErhI	CCWWGG	5 cut(s)	263, 565, 599, 774, 1008
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	1071
FbaI	TGATCA	4 cut(s)	694, 799, 891, 934
Fnu4HI	GCNGC	2 cut(s)	866, 1131
FokI	GGATG	2 cut(s)	720, 831
Fsp4HI	GCNGC	2 cut(s)	866, 1131
FspBI	CTAG	1 cut(s)	959
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	866, 1131
GsaI	CCCAGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	850, 1102
HapII	CCGG	2 cut(s)	143, 584
HhaI	GCGC	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	9 cut(s)	153, 436, 545, 593, 613, 740, 874, 883, 1091
HpaII	CCGG	2 cut(s)	143, 584
HphI	GGTGA	6 cut(s)	540, 548, 611, 653, 894, 1070
Hpy188I	TCNGA	3 cut(s)	236, 291, 481
Hpy188III	TCNNGA	5 cut(s)	505, 737, 889, 929, 959
HpyCH4III	ACNGT	2 cut(s)	523, 926
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	5 cut(s)	493, 681, 706, 865, 974
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 856, 865
HpyF3I	CTNAG	2 cut(s)	191, 983
HpySE526I	ACGT	1 cut(s)	457
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	4 cut(s)	694, 799, 891, 934
LmnI	GCTCC	5 cut(s)	466, 575, 759, 856, 1082
Lsp1109I	GCAGC	1 cut(s)	877
LweI	GCATC	2 cut(s)	809, 983
MaeI	CTAG	1 cut(s)	959
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	2 cut(s)	25, 546
MboII	GAAGA	9 cut(s)	89, 124, 182, 211, 226, 263, 296, 399, 828
MfeI	CAATTG	1 cut(s)	860
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	6 cut(s)	9, 761, 860, 965, 1024, 1158
MlyI	GAGTC	2 cut(s)	430, 554
MmeI	TCCRAC	1 cut(s)	699
MseI	TTAA	2 cut(s)	8, 15
MspI	CCGG	2 cut(s)	143, 584
MspR9I	CCNGG	2 cut(s)	143, 144
MunI	CAATTG	1 cut(s)	860
MwoI	GCNNNNNNNGC	3 cut(s)	362, 856, 865
NciI	CCSGG	2 cut(s)	143, 144
NcoI	CCATGG	1 cut(s)	263
NdeI	CATATG	1 cut(s)	1071
NlaIV	GGNNCC	2 cut(s)	571, 1084
NmuCI	GTSAC	1 cut(s)	546
NspI	RCATGY	1 cut(s)	137
PagI	TCATGA	1 cut(s)	888
PciI	ACATGT	1 cut(s)	133
PfeI	GAWTC	7 cut(s)	153, 593, 613, 740, 874, 883, 1091
PkrI	GCNGC	2 cut(s)	867, 1132
PleI	GAGTC	2 cut(s)	430, 553
PpsI	GAGTC	2 cut(s)	430, 553
PscI	ACATGT	1 cut(s)	133
PshAI	GACNNNNGTC	2 cut(s)	475, 924
PsiI	TTATAA	2 cut(s)	252, 915
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	571, 1084
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	6 cut(s)	60, 138, 302, 329, 710, 1068
RsaNI	GTAC	6 cut(s)	59, 137, 301, 328, 709, 1067
SaqAI	TTAA	2 cut(s)	8, 15
SatI	GCNGC	2 cut(s)	866, 1131
SchI	GAGTC	2 cut(s)	430, 554
ScrFI	CCNGG	2 cut(s)	143, 144
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	809, 983
SfcI	CTRYAG	2 cut(s)	162, 749
SmaI	CCCGGG	1 cut(s)	144
Sse9I	AATT	6 cut(s)	9, 761, 860, 965, 1024, 1158
SsiI	CCGC	2 cut(s)	89, 1131
SspI	AATATT	1 cut(s)	1114
SspMI	CTAG	1 cut(s)	959
StyD4I	CCNGG	2 cut(s)	141, 142
StyI	CCWWGG	5 cut(s)	263, 565, 599, 774, 1008
TaaI	ACNGT	2 cut(s)	523, 926
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	219, 839
TasI	AATT	6 cut(s)	9, 761, 860, 965, 1024, 1158
TatI	WGTACW	2 cut(s)	708, 1066
TauI	GCSGC	1 cut(s)	1133
TfiI	GAWTC	7 cut(s)	153, 593, 613, 740, 874, 883, 1091
Tru1I	TTAA	2 cut(s)	8, 15
Tru9I	TTAA	2 cut(s)	8, 15
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	1 cut(s)	865
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	8 cut(s)	134, 183, 309, 568, 887, 1050, 1077, 1088
TspMI	CCCGGG	1 cut(s)	142
XapI	RAATTY	1 cut(s)	965
XbaI	TCTAGA	1 cut(s)	958
XceI	RCATGY	1 cut(s)	137
XmaI	CCCGGG	1 cut(s)	142
XspI	CTAG	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.