Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

23215953 .. 23219209

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G62700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAATTCGTTTTCACAAGTACCTCCTGGCTTCAGATTTCATCCTACTGATGAAGAACTTGTAGACTACTACTTGAGGAAAAAAGTTGCATCAAAGAGAATAGAAATCGATATCATCAAGGATGTTGATCTTTACAAGATTGAGCCATGTGATCTTCAAGAGTTATGCAAGATAGGAAACGAAGAGCAGAGCGAATGGTACTTCTTTAGTCATAAAGACAAGAAGTATCCCACGGGAACTCGAACCAATAGAGCCACGAAAGCAGGATTTTGGAAAGCCACTGGAAGAGACAAGGCTATATATATAAGACATAGTCTTATCGGTATGAGGAAAACACTTGTGTTTTACAAAGGAAGAGCCCCAAATGGTCAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAGTGAAAATGGAACCCCTCAGGAAGAAGGATGGGTAGTATGTAGGGTATTCAAGAAGAAATTGGCAGCGACAGTGAGGAAAATGGGAGATTACCATTCATCACCATCGCAGCATTGGTACGATGATCAGCTCTCTTTTATGGCCTCCGAGATCATTTCTAGTTCTCCACGACAGTTTCTTCCCAATCATCATTATAACCGCCACCATCACCAGCAGACATTGCCTTGTGGCCTCAATGCATTCAACAACAACAATCCTAACTTGCAATGCAAGCAAGAGCTCGAGTTACATTACAATCAAATGGTACAACATCAACAACAAAACCATCATCTTCGTGAATCTATGTTTCTCCAGCTTCCTCAGCTCGAAAGCCCTACCAGTAATTGCAATTCTGACAACAACAATAACACAAGAAATATTAGTAACTTGCAGAAATCATCAAATATATCTCATGAGGAACAATTGCAACAAGGGAATCAAAGTTTCAGCTCTCTGTATTACGATCAAGGAGTAGAGCAAATGACTACTGACTGGAGAGTTCTCGATAAATTTGTTGCTTCACAGCTTAGCAATGATGAAGAGGCTGCAGCCGTGGTTTCTTCTTCTTCTCATCAAAACAACGTCAAGATTGACACGAGAAACACGGGTTATCATGTGATAGATGAGGGAATAAATTTGCCGGAGAATGATTCTGAAAGGGTTGTTGAAATGGGAGAAGAGTATTCAAATGCTCATGCTGCTTCTACTTCTTCAAGTTGTCAGATTGATCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0006355 GO:0008150 GO:0008152 GO:0009505 GO:0009531 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009741 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010383 GO:0010410 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010941 GO:0010942 GO:0010981 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043067 GO:0043068 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044036 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045491 GO:0045893 GO:0045935 GO:0046983 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071704 GO:0071944 GO:0080090 GO:0090058 GO:0097159 GO:0097305 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

394

Amino Acids

45.58

Weight (kDa)

6.17

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	8.7e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	1 cut(s)	610
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	3 cut(s)	4, 959, 1084
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	4 cut(s)	21, 200, 530, 717
AgsI	TTSAA	6 cut(s)	158, 463, 655, 1118, 1137, 1164
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	6 cut(s)	541, 691, 766, 775, 900, 976
AluI	AGCT	6 cut(s)	541, 691, 766, 775, 900, 976
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	2 cut(s)	552, 640
ApeKI	GCWGC	5 cut(s)	476, 520, 995, 998, 1148
ApoI	RAATTY	3 cut(s)	4, 959, 1084
AsuHPI	GGTGA	2 cut(s)	504, 611
AvaI	CYCGRG	1 cut(s)	692
AxyI	CCTNAGG	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	361, 693
BauI	CACGAG	1 cut(s)	1045
Bbv12I	GWGCWC	1 cut(s)	693
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	5 cut(s)	488, 532, 982, 1010, 1135
BccI	CCATC	4 cut(s)	435, 523, 624, 744
BceAI	ACGGC	1 cut(s)	986
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	570, 1183
BfmI	CTRYAG	1 cut(s)	996
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	5 cut(s)	477, 521, 996, 999, 1149
BlpI	GCTNAGC	1 cut(s)	977
BlsI	GCNGC	5 cut(s)	478, 522, 997, 1000, 1150
Bme1390I	CCNGG	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	692
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	746, 964
Bpu10I	CCTNAGC	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	94
Bsa29I	ATCGAT	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	231, 1002
Bse1I	ACTGG	3 cut(s)	286, 789, 947
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	3 cut(s)	629, 683, 988
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	231, 1002
BseGI	GGATG	3 cut(s)	40, 127, 446
BseJI	GATNNNNATC	1 cut(s)	126
BseMI	GCAATG	3 cut(s)	629, 683, 988
BseMII	CTCAG	2 cut(s)	443, 785
BseNI	ACTGG	3 cut(s)	286, 789, 947
BseXI	GCAGC	5 cut(s)	488, 532, 982, 1010, 1135
BshFI	GGCC	2 cut(s)	554, 642
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	1 cut(s)	1091
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	554, 642
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	361, 693
Bsp143I	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
Bsp1720I	GCTNAGC	1 cut(s)	977
BspACI	CCGC	1 cut(s)	610
BspANI	GGCC	2 cut(s)	554, 642
BspCNI	CTCAG	2 cut(s)	442, 784
BspDI	ATCGAT	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	1000
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	2 cut(s)	177, 349
BsrDI	GCAATG	3 cut(s)	629, 683, 988
BsrI	ACTGG	3 cut(s)	286, 789, 947
BssECI	CCNNGG	2 cut(s)	231, 1002
BssMI	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
BssSI	CACGAG	1 cut(s)	1045
Bst2BI	CACGAG	1 cut(s)	1045
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	484, 585
Bst6I	CTCTTC	5 cut(s)	177, 280, 349, 984, 1122
BstAPI	GCANNNNNTGC	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	4 cut(s)	403, 429, 771, 977
BstDSI	CCRYGG	2 cut(s)	231, 1002
BstF5I	GGATG	3 cut(s)	40, 127, 446
BstKTI	GATC	7 cut(s)	130, 154, 387, 538, 564, 916, 1180
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 631, 682, 772, 1148
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	5 cut(s)	488, 532, 982, 1010, 1135
Bsu15I	ATCGAT	1 cut(s)	108
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	554, 642
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	231, 1002
BtgZI	GCGATG	1 cut(s)	501
BtsCI	GGATG	3 cut(s)	40, 127, 446
BtsIMutI	CAGTG	2 cut(s)	279, 489
Cac8I	GCNNGC	1 cut(s)	683
CciI	TCATGA	1 cut(s)	862
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	20, 199, 529, 716
CviAII	CATG	5 cut(s)	147, 388, 863, 1064, 1145
CviQI	GTAC	4 cut(s)	20, 199, 529, 716
DdeI	CTNAG	4 cut(s)	403, 429, 771, 977
DpnI	GATC	7 cut(s)	129, 153, 386, 537, 563, 915, 1179
DpnII	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
Eam1104I	CTCTTC	5 cut(s)	177, 280, 349, 984, 1122
EarI	CTCTTC	5 cut(s)	177, 280, 349, 984, 1122
Ecl136II	GAGCTC	1 cut(s)	691
Eco24I	GRGCYC	2 cut(s)	361, 693
Eco32I	GATATC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	1 cut(s)	16
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	361, 693
FaeI	CATG	5 cut(s)	150, 391, 866, 1067, 1148
FatI	CATG	5 cut(s)	146, 387, 862, 1063, 1144
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	5 cut(s)	477, 521, 996, 999, 1149
FokI	GGATG	3 cut(s)	27, 134, 453
FriOI	GRGCYC	2 cut(s)	361, 693
Fsp4HI	GCNGC	5 cut(s)	477, 521, 996, 999, 1149
FspBI	CTAG	2 cut(s)	570, 1183
GluI	GCNGC	5 cut(s)	477, 521, 996, 999, 1149
GsuI	CTGGAG	2 cut(s)	746, 964
HaeIII	GGCC	2 cut(s)	554, 642
HapII	CCGG	1 cut(s)	1091
Hin1II	CATG	5 cut(s)	150, 391, 866, 1067, 1148
HinfI	GANTC	3 cut(s)	749, 886, 1100
HpaII	CCGG	1 cut(s)	1091
HphI	GGTGA	2 cut(s)	504, 611
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	7 cut(s)	35, 372, 379, 559, 805, 1105, 1173
Hpy188III	TCNNGA	7 cut(s)	158, 431, 463, 746, 863, 953, 1036
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	484, 585
HpyCH4IV	ACGT	1 cut(s)	1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 631, 682, 772, 1148
HpyF3I	CTNAG	4 cut(s)	403, 429, 771, 977
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	5 cut(s)	150, 391, 866, 1067, 1148
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
LguI	GCTCTTC	2 cut(s)	177, 349
Lsp1109I	GCAGC	5 cut(s)	488, 532, 982, 1010, 1135
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	570, 1183
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	2 cut(s)	696, 833
MalI	GATC	7 cut(s)	129, 153, 386, 537, 563, 915, 1179
MboI	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
MfeI	CAATTG	1 cut(s)	872
MhlI	GDGCHC	2 cut(s)	361, 693
MluCI	AATT	7 cut(s)	4, 470, 793, 799, 872, 959, 1084
Mph1103I	ATGCAT	1 cut(s)	652
MslI	CAYNNNNRTG	1 cut(s)	744
MspI	CCGG	1 cut(s)	1091
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	872
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	260, 631, 682, 772, 1148
NdeII	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
NlaIII	CATG	5 cut(s)	150, 391, 866, 1067, 1148
NlaIV	GGNNCC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	652
PaeR7I	CTCGAG	1 cut(s)	692
PagI	TCATGA	1 cut(s)	862
PciSI	GCTCTTC	2 cut(s)	177, 349
PctI	GAATGC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	749, 886, 1100
PflFI	GACNNNGTC	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	478, 522, 997, 1000, 1150
PsiI	TTATAA	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	424
PspXI	VCTCGAGB	1 cut(s)	692
PstI	CTGCAG	1 cut(s)	1000
PsyI	GACNNNGTC	1 cut(s)	312
RsaI	GTAC	4 cut(s)	21, 200, 530, 717
RsaNI	GTAC	4 cut(s)	20, 199, 529, 716
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	693
SapI	GCTCTTC	2 cut(s)	177, 349
SatI	GCNGC	5 cut(s)	477, 521, 996, 999, 1149
Sau3AI	GATC	7 cut(s)	127, 151, 384, 535, 561, 913, 1177
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	361, 693
SetI	ASST	8 cut(s)	25, 543, 693, 768, 777, 902, 978, 1035
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	996
Sfr274I	CTCGAG	1 cut(s)	692
SlaI	CTCGAG	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	73, 692
SmoI	CTYRAG	2 cut(s)	73, 692
Sse9I	AATT	7 cut(s)	4, 470, 793, 799, 872, 959, 1084
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	2 cut(s)	570, 1183
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	484, 585
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	5 cut(s)	108, 241, 693, 777, 954
TasI	AATT	7 cut(s)	4, 470, 793, 799, 872, 959, 1084
TfiI	GAWTC	3 cut(s)	749, 886, 1100
TscAI	CASTG	2 cut(s)	286, 489
TseI	GCWGC	5 cut(s)	476, 520, 995, 998, 1148
TspDTI	ATGAA	5 cut(s)	17, 29, 66, 498, 1002
TspRI	CASTG	2 cut(s)	286, 489
Tth111I	GACNNNGTC	1 cut(s)	312
XapI	RAATTY	3 cut(s)	4, 959, 1084
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XhoI	CTCGAG	1 cut(s)	692
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	2 cut(s)	570, 1183
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.