Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

18555486 .. 18560246

Gene Structure 4761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG207400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGGACTGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCTACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGTATCGACTTGAAACTAATGAAAATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAACGATTGGCAACAGTAAGGAGAATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCCGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATCATATCATCACCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAATGCTATGCCTGTGCCTCCTCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGGCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCCATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCTACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

376

Amino Acids

43.75

Weight (kDa)

6.06

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	1.3e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 870
AasI	GACNNNNNNGTC	1 cut(s)	110
AciI	CCGC	1 cut(s)	1086
AclWI	GGATC	3 cut(s)	159, 392, 998
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	21, 200, 227, 665, 1023
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	93, 158, 407, 463
AjiI	CACGTC	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	6 cut(s)	263, 296, 622, 709, 937, 959
AluI	AGCT	6 cut(s)	263, 296, 622, 709, 937, 959
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	159, 392, 998
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	421, 803, 1055
ApeKI	GCWGC	1 cut(s)	820
ApoI	RAATTY	1 cut(s)	920
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	26, 27
AsuHPI	GGTGA	6 cut(s)	498, 506, 569, 608, 849, 1025
AvaI	CYCGRG	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	429
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	2 cut(s)	435, 796
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BclI	TGATCA	4 cut(s)	649, 754, 846, 889
BcnI	CCSGG	2 cut(s)	26, 27
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	3 cut(s)	45, 231, 704
BisI	GCNGC	2 cut(s)	821, 1086
BlpI	GCTNAGC	1 cut(s)	938
BlsI	GCNGC	2 cut(s)	822, 1087
Bme1390I	CCNGG	2 cut(s)	26, 27
BmeT110I	CYCGRG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	529, 1039
BmrFI	CCNGG	2 cut(s)	26, 27
BmsI	GCATC	2 cut(s)	764, 938
BoxI	GACNNNNGTC	2 cut(s)	373, 879
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
Bpu1102I	GCTNAGC	1 cut(s)	938
BpuMI	CCSGG	2 cut(s)	26, 27
BsaBI	GATNNNNATC	2 cut(s)	69, 126
BsaJI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 729, 963
BsaXI	ACNNNNNCTCC	4 cut(s)	478, 508, 512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	429
Bse8I	GATNNNNATC	2 cut(s)	69, 126
BseDI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 729, 963
BseGI	GGATG	4 cut(s)	446, 688, 779, 1094
BseJI	GATNNNNATC	2 cut(s)	69, 126
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	443, 952
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	5 cut(s)	417, 520, 675, 824, 844
BseXI	GCAGC	1 cut(s)	832
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	3 cut(s)	423, 805, 1057
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	423, 805, 1057
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp1720I	GCTNAGC	1 cut(s)	938
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	1086
BspANI	GGCC	3 cut(s)	423, 805, 1057
BspCNI	CTCAG	2 cut(s)	442, 951
BspHI	TCATGA	1 cut(s)	843
BspLI	GGNNCC	2 cut(s)	529, 1039
BspPI	GGATC	3 cut(s)	159, 392, 998
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 729, 963
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	5 cut(s)	146, 523, 557, 729, 963
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	481, 881
Bst6I	CTCTTC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	74, 429, 938
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	4 cut(s)	446, 688, 779, 1094
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 811, 820
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	2 cut(s)	373, 879
BstSCI	CCNGG	2 cut(s)	24, 25
BstSFI	CTRYAG	3 cut(s)	45, 231, 704
BstV1I	GCAGC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	423, 805, 1057
BtgI	CCRYGG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	4 cut(s)	446, 688, 779, 1094
CciI	TCATGA	1 cut(s)	843
Cfr13I	GGNCC	1 cut(s)	422
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	5 cut(s)	20, 199, 226, 664, 1022
CviAII	CATG	9 cut(s)	17, 147, 325, 388, 510, 538, 779, 844, 944
CviQI	GTAC	5 cut(s)	20, 199, 226, 664, 1022
DdeI	CTNAG	3 cut(s)	74, 429, 938
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	5 cut(s)	146, 523, 557, 729, 963
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	25
EcoT14I	CCWWGG	5 cut(s)	146, 523, 557, 729, 963
ErhI	CCWWGG	5 cut(s)	146, 523, 557, 729, 963
FaeI	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 782, 847, 947
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	9 cut(s)	16, 146, 324, 387, 509, 537, 778, 843, 943
FauNDI	CATATG	1 cut(s)	1026
FbaI	TGATCA	4 cut(s)	649, 754, 846, 889
Fnu4HI	GCNGC	2 cut(s)	821, 1086
FokI	GGATG	4 cut(s)	453, 675, 786, 1081
Fsp4HI	GCNGC	2 cut(s)	821, 1086
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	2 cut(s)	821, 1086
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	423, 805, 1057
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 782, 847, 947
HindIII	AAGCTT	1 cut(s)	957
HinfI	GANTC	9 cut(s)	36, 334, 503, 551, 571, 695, 829, 838, 1046
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	6 cut(s)	498, 506, 569, 608, 849, 1025
Hpy188I	TCNGA	3 cut(s)	119, 189, 379
Hpy188III	TCNNGA	7 cut(s)	158, 431, 463, 692, 844, 884, 914
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	481, 881
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	168, 391, 636, 661, 820, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 811, 820
HpyF3I	CTNAG	3 cut(s)	74, 429, 938
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 782, 847, 947
Ksp22I	TGATCA	4 cut(s)	649, 754, 846, 889
LmnI	GCTCC	5 cut(s)	364, 533, 714, 811, 1037
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	2 cut(s)	764, 938
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	504
MboII	GAAGA	8 cut(s)	65, 94, 109, 146, 194, 297, 446, 783
MfeI	CAATTG	1 cut(s)	815
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	6 cut(s)	161, 716, 815, 920, 979, 1113
MlyI	GAGTC	2 cut(s)	328, 512
MmeI	TCCRAC	1 cut(s)	654
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 27
MunI	CAATTG	1 cut(s)	815
MwoI	GCNNNNNNNGC	3 cut(s)	260, 811, 820
NciI	CCSGG	2 cut(s)	26, 27
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	1026
NlaIII	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 782, 847, 947
NlaIV	GGNNCC	2 cut(s)	529, 1039
NmuCI	GTSAC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	843
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	7 cut(s)	36, 551, 571, 695, 829, 838, 1046
PkrI	GCNGC	2 cut(s)	822, 1087
PleI	GAGTC	2 cut(s)	328, 511
PpsI	GAGTC	2 cut(s)	328, 511
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	2 cut(s)	373, 879
PsiI	TTATAA	2 cut(s)	135, 870
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	529, 1039
PspPI	GGNCC	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	5 cut(s)	21, 200, 227, 665, 1023
RsaNI	GTAC	5 cut(s)	20, 199, 226, 664, 1022
SatI	GCNGC	2 cut(s)	821, 1086
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	328, 512
ScrFI	CCNGG	2 cut(s)	26, 27
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	764, 938
SfcI	CTRYAG	3 cut(s)	45, 231, 704
SmaI	CCCGGG	1 cut(s)	27
Sse9I	AATT	6 cut(s)	161, 716, 815, 920, 979, 1113
SsiI	CCGC	1 cut(s)	1086
SspI	AATATT	1 cut(s)	1069
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	2 cut(s)	24, 25
StyI	CCWWGG	5 cut(s)	146, 523, 557, 729, 963
TaaI	ACNGT	2 cut(s)	481, 881
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	102, 400, 794
TasI	AATT	6 cut(s)	161, 716, 815, 920, 979, 1113
TatI	WGTACW	2 cut(s)	663, 1021
TauI	GCSGC	1 cut(s)	1088
TfiI	GAWTC	7 cut(s)	36, 551, 571, 695, 829, 838, 1046
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	820
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	9 cut(s)	17, 66, 207, 429, 526, 842, 1005, 1032, 1043
TspMI	CCCGGG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	920
XbaI	TCTAGA	1 cut(s)	913
XceI	RCATGY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.