Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

17861113 .. 17863315

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G017180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGGACTGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCTACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGTATCGACTTGAAACTAATGAAAATGGCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAACGATTGGCAACAGTAAGGAGAATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCCGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATATCATCACCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAGTGCTATGCCTGTGCCCCCTCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGGCACTTATGATCATCATAGGAACAATGGATACCATGTAATGCCATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

375

Amino Acids

43.65

Weight (kDa)

6.06

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	1.3e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	135, 867
AasI	GACNNNNNNGTC	1 cut(s)	110
AciI	CCGC	1 cut(s)	1083
AclWI	GGATC	3 cut(s)	159, 392, 995
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	5 cut(s)	21, 200, 227, 662, 1020
AfiI	CCNNNNNNNGG	1 cut(s)	430
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	93, 158, 407, 463
AjiI	CACGTC	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	1050, 1082
AluBI	AGCT	6 cut(s)	263, 296, 619, 706, 934, 956
AluI	AGCT	6 cut(s)	263, 296, 619, 706, 934, 956
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	3 cut(s)	159, 392, 995
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	3 cut(s)	421, 800, 1052
ApeKI	GCWGC	1 cut(s)	817
ApoI	RAATTY	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	26, 27
AsuHPI	GGTGA	6 cut(s)	498, 506, 569, 605, 846, 1022
AvaI	CYCGRG	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	681
BauI	CACGAG	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	829
BccI	CCATC	2 cut(s)	435, 793
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciVI	GTATCC	1 cut(s)	764
BclI	TGATCA	4 cut(s)	646, 751, 843, 886
BcnI	CCSGG	2 cut(s)	26, 27
BfaI	CTAG	1 cut(s)	911
BfmI	CTRYAG	3 cut(s)	45, 231, 701
BfuI	GTATCC	1 cut(s)	764
BisI	GCNGC	2 cut(s)	818, 1083
BlpI	GCTNAGC	1 cut(s)	935
BlsI	GCNGC	2 cut(s)	819, 1084
Bme1390I	CCNGG	2 cut(s)	26, 27
BmeT110I	CYCGRG	1 cut(s)	25
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	529, 1036
BmrFI	CCNGG	2 cut(s)	26, 27
BmsI	GCATC	1 cut(s)	935
BoxI	GACNNNNGTC	2 cut(s)	373, 876
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
Bpu1102I	GCTNAGC	1 cut(s)	935
BpuMI	CCSGG	2 cut(s)	26, 27
BsaBI	GATNNNNATC	2 cut(s)	69, 126
BsaJI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 726, 960
BsaXI	ACNNNNNCTCC	4 cut(s)	478, 508, 512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	286
Bse21I	CCTNAGG	1 cut(s)	429
Bse8I	GATNNNNATC	2 cut(s)	69, 126
BseDI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 726, 960
BseGI	GGATG	3 cut(s)	446, 685, 1091
BseJI	GATNNNNATC	2 cut(s)	69, 126
BseLI	CCNNNNNNNGG	1 cut(s)	430
BseMII	CTCAG	2 cut(s)	443, 949
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	4 cut(s)	417, 520, 821, 841
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	1 cut(s)	829
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	3 cut(s)	423, 802, 1054
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	423, 802, 1054
BsoBI	CYCGRG	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	361, 681
Bsp1720I	GCTNAGC	1 cut(s)	935
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	1083
BspANI	GGCC	3 cut(s)	423, 802, 1054
BspCNI	CTCAG	2 cut(s)	442, 948
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	2 cut(s)	529, 1036
BspPI	GGATC	3 cut(s)	159, 392, 995
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	7 cut(s)	24, 25, 146, 523, 557, 726, 960
BssSI	CACGAG	1 cut(s)	392
BssT1I	CCWWGG	5 cut(s)	146, 523, 557, 726, 960
Bst2BI	CACGAG	1 cut(s)	392
Bst4CI	ACNGT	3 cut(s)	481, 665, 878
Bst6I	CTCTTC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	74, 429, 935
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	3 cut(s)	446, 685, 1091
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 808, 817
BstNSI	RCATGY	1 cut(s)	20
BstPAI	GACNNNNGTC	2 cut(s)	373, 876
BstSCI	CCNGG	2 cut(s)	24, 25
BstSFI	CTRYAG	3 cut(s)	45, 231, 701
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	764
BsuRI	GGCC	3 cut(s)	423, 802, 1054
BtgI	CCRYGG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	356
BtsCI	GGATG	3 cut(s)	446, 685, 1091
BtsIMutI	CAGTG	1 cut(s)	670
CciI	TCATGA	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	422
Cfr9I	CCCGGG	1 cut(s)	25
Csp6I	GTAC	5 cut(s)	20, 199, 226, 661, 1019
CviAII	CATG	9 cut(s)	17, 147, 325, 388, 510, 538, 776, 841, 941
CviQI	GTAC	5 cut(s)	20, 199, 226, 661, 1019
DdeI	CTNAG	3 cut(s)	74, 429, 935
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco130I	CCWWGG	5 cut(s)	146, 523, 557, 726, 960
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	25
EcoT14I	CCWWGG	5 cut(s)	146, 523, 557, 726, 960
ErhI	CCWWGG	5 cut(s)	146, 523, 557, 726, 960
FaeI	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 779, 844, 944
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	9 cut(s)	16, 146, 324, 387, 509, 537, 775, 840, 940
FauNDI	CATATG	1 cut(s)	1023
FbaI	TGATCA	4 cut(s)	646, 751, 843, 886
Fnu4HI	GCNGC	2 cut(s)	818, 1083
FokI	GGATG	3 cut(s)	453, 672, 1078
Fsp4HI	GCNGC	2 cut(s)	818, 1083
FspBI	CTAG	1 cut(s)	911
GluI	GCNGC	2 cut(s)	818, 1083
GsaI	CCCAGC	1 cut(s)	267
HaeIII	GGCC	3 cut(s)	423, 802, 1054
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 779, 844, 944
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	9 cut(s)	36, 334, 503, 551, 571, 692, 826, 835, 1043
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	6 cut(s)	498, 506, 569, 605, 846, 1022
Hpy188I	TCNGA	3 cut(s)	119, 189, 379
Hpy188III	TCNNGA	7 cut(s)	158, 431, 463, 689, 841, 881, 911
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	481, 665, 878
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	6 cut(s)	168, 391, 633, 658, 817, 926
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 808, 817
HpyF3I	CTNAG	3 cut(s)	74, 429, 935
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 779, 844, 944
Ksp22I	TGATCA	4 cut(s)	646, 751, 843, 886
LmnI	GCTCC	5 cut(s)	364, 533, 711, 808, 1034
Lsp1109I	GCAGC	1 cut(s)	829
LweI	GCATC	1 cut(s)	935
MaeI	CTAG	1 cut(s)	911
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	1 cut(s)	504
MboII	GAAGA	8 cut(s)	65, 94, 109, 146, 194, 297, 446, 780
MfeI	CAATTG	1 cut(s)	812
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	361, 681
MluCI	AATT	6 cut(s)	161, 713, 812, 917, 976, 1110
MlyI	GAGTC	2 cut(s)	328, 512
MmeI	TCCRAC	1 cut(s)	651
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	26, 27
MunI	CAATTG	1 cut(s)	812
MwoI	GCNNNNNNNGC	3 cut(s)	260, 808, 817
NciI	CCSGG	2 cut(s)	26, 27
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	1023
NlaIII	CATG	9 cut(s)	20, 150, 328, 391, 513, 541, 779, 844, 944
NlaIV	GGNNCC	2 cut(s)	529, 1036
NmuCI	GTSAC	1 cut(s)	504
NspI	RCATGY	1 cut(s)	20
PagI	TCATGA	1 cut(s)	840
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	7 cut(s)	36, 551, 571, 692, 826, 835, 1043
PkrI	GCNGC	2 cut(s)	819, 1084
PleI	GAGTC	2 cut(s)	328, 511
PpsI	GAGTC	2 cut(s)	328, 511
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	2 cut(s)	373, 876
PsiI	TTATAA	2 cut(s)	135, 867
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	529, 1036
PspPI	GGNCC	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	755, 787
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	5 cut(s)	21, 200, 227, 662, 1020
RsaNI	GTAC	5 cut(s)	20, 199, 226, 661, 1019
SatI	GCNGC	2 cut(s)	818, 1083
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	2 cut(s)	328, 512
ScrFI	CCNGG	2 cut(s)	26, 27
SduI	GDGCHC	2 cut(s)	361, 681
SfaNI	GCATC	1 cut(s)	935
SfcI	CTRYAG	3 cut(s)	45, 231, 701
SmaI	CCCGGG	1 cut(s)	27
Sse9I	AATT	6 cut(s)	161, 713, 812, 917, 976, 1110
SsiI	CCGC	1 cut(s)	1083
SspI	AATATT	1 cut(s)	1066
SspMI	CTAG	1 cut(s)	911
StyD4I	CCNGG	2 cut(s)	24, 25
StyI	CCWWGG	5 cut(s)	146, 523, 557, 726, 960
TaaI	ACNGT	3 cut(s)	481, 665, 878
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	102, 400, 791
TasI	AATT	6 cut(s)	161, 713, 812, 917, 976, 1110
TatI	WGTACW	2 cut(s)	660, 1018
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	7 cut(s)	36, 551, 571, 692, 826, 835, 1043
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	817
Tsp45I	GTSAC	1 cut(s)	504
TspDTI	ATGAA	9 cut(s)	17, 66, 207, 429, 526, 839, 1002, 1029, 1040
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	1 cut(s)	670
XapI	RAATTY	1 cut(s)	917
XbaI	TCTAGA	1 cut(s)	910
XceI	RCATGY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.