Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

50814445 .. 50819926

Gene Structure 5482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGATGGTGGAAAGGGGAGCATGGACAATCATAGGCTGATTGGTGGACACGAGGTTTTGGTTCAATCAGATCTGTACTGCAGCAAATTTAGCGAAGGTTTGAAGAAGATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGGACAGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCTACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGTATCGACTTGAAACTAATGAAAATGGCCCTCCTCAGGCAAAAGGATGGGTTGTGTGTAGGGTTTTCAAGAAACGATTGGCAACAGTAAGGAGAATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCCGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATCATATCATCATCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAATGCTATGCCTGTGCCTCCTCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGTCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCAATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCGGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

413

Amino Acids

47.64

Weight (kDa)

6.41

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	44 - 171	1.6e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	243, 978
AasI	GACNNNNNNGTC	1 cut(s)	218
AciI	CCGC	1 cut(s)	1193
AclWI	GGATC	3 cut(s)	267, 500, 1106
AcsI	RAATTY	2 cut(s)	86, 1028
AfaI	GTAC	6 cut(s)	77, 129, 308, 335, 773, 1131
AfiI	CCNNNNNNNGG	1 cut(s)	538
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	6 cut(s)	65, 103, 201, 266, 515, 571
AjiI	CACGTC	1 cut(s)	464
AjuI	GAANNNNNNNTTGG	2 cut(s)	1161, 1193
AluBI	AGCT	6 cut(s)	371, 404, 730, 817, 1045, 1067
AluI	AGCT	6 cut(s)	371, 404, 730, 817, 1045, 1067
Alw21I	GWGCWC	1 cut(s)	469
AlwI	GGATC	3 cut(s)	267, 500, 1106
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	4 cut(s)	529, 911, 1163, 1194
ApeKI	GCWGC	2 cut(s)	81, 928
ApoI	RAATTY	2 cut(s)	86, 1028
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	2 cut(s)	134, 135
AsuHPI	GGTGA	5 cut(s)	606, 614, 677, 957, 1133
AvaI	CYCGRG	1 cut(s)	133
AxyI	CCTNAGG	1 cut(s)	537
BauI	CACGAG	2 cut(s)	50, 500
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	93, 940
BccI	CCATC	1 cut(s)	543
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BclI	TGATCA	4 cut(s)	757, 862, 954, 997
BcnI	CCSGG	2 cut(s)	134, 135
BfaI	CTAG	1 cut(s)	1022
BfmI	CTRYAG	4 cut(s)	79, 153, 339, 812
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	3 cut(s)	82, 929, 1194
BlpI	GCTNAGC	1 cut(s)	1046
BlsI	GCNGC	3 cut(s)	83, 930, 1195
Bme1390I	CCNGG	2 cut(s)	134, 135
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	637, 1147
BmrFI	CCNGG	2 cut(s)	134, 135
BmsI	GCATC	2 cut(s)	872, 1046
BoxI	GACNNNNGTC	2 cut(s)	481, 987
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu1102I	GCTNAGC	1 cut(s)	1046
BpuMI	CCSGG	2 cut(s)	134, 135
BsaBI	GATNNNNATC	2 cut(s)	177, 234
BsaJI	CCNNGG	7 cut(s)	132, 133, 254, 631, 665, 837, 1071
BsaXI	ACNNNNNCTCC	4 cut(s)	586, 616, 620, 650
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse1I	ACTGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	537
Bse8I	GATNNNNATC	2 cut(s)	177, 234
BseDI	CCNNGG	7 cut(s)	132, 133, 254, 631, 665, 837, 1071
BseGI	GGATG	5 cut(s)	10, 554, 796, 887, 1202
BseJI	GATNNNNATC	2 cut(s)	177, 234
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMII	CTCAG	2 cut(s)	551, 1060
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	5 cut(s)	525, 628, 783, 932, 952
BseXI	GCAGC	2 cut(s)	93, 940
BseYI	CCCAGC	1 cut(s)	371
BshFI	GGCC	4 cut(s)	531, 913, 1165, 1196
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	4 cut(s)	531, 913, 1165, 1196
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp1720I	GCTNAGC	1 cut(s)	1046
Bsp19I	CCATGG	1 cut(s)	254
BspACI	CCGC	1 cut(s)	1193
BspANI	GGCC	4 cut(s)	531, 913, 1165, 1196
BspCNI	CTCAG	2 cut(s)	550, 1059
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	2 cut(s)	637, 1147
BspMAI	CTGCAG	1 cut(s)	83
BspPI	GGATC	3 cut(s)	267, 500, 1106
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	7 cut(s)	132, 133, 254, 631, 665, 837, 1071
BssSI	CACGAG	2 cut(s)	50, 500
BssT1I	CCWWGG	5 cut(s)	254, 631, 665, 837, 1071
Bst2BI	CACGAG	2 cut(s)	50, 500
Bst4CI	ACNGT	2 cut(s)	589, 989
Bst6I	CTCTTC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	182, 537, 1046
BstDSI	CCRYGG	1 cut(s)	254
BstF5I	GGATG	5 cut(s)	10, 554, 796, 887, 1202
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 368, 919, 928
BstNSI	RCATGY	1 cut(s)	128
BstPAI	GACNNNNGTC	2 cut(s)	481, 987
BstSCI	CCNGG	2 cut(s)	132, 133
BstSFI	CTRYAG	4 cut(s)	79, 153, 339, 812
BstV1I	GCAGC	2 cut(s)	93, 940
BstX2I	RGATCY	2 cut(s)	70, 259
BstYI	RGATCY	2 cut(s)	70, 259
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	4 cut(s)	531, 913, 1165, 1196
BtgI	CCRYGG	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	5 cut(s)	10, 554, 796, 887, 1202
CciI	TCATGA	1 cut(s)	951
Cfr13I	GGNCC	1 cut(s)	530
Cfr9I	CCCGGG	1 cut(s)	133
Csp6I	GTAC	6 cut(s)	76, 128, 307, 334, 772, 1130
CviQI	GTAC	6 cut(s)	76, 128, 307, 334, 772, 1130
DdeI	CTNAG	3 cut(s)	182, 537, 1046
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco130I	CCWWGG	5 cut(s)	254, 631, 665, 837, 1071
Eco81I	CCTNAGG	1 cut(s)	537
Eco88I	CYCGRG	1 cut(s)	133
EcoT14I	CCWWGG	5 cut(s)	254, 631, 665, 837, 1071
ErhI	CCWWGG	5 cut(s)	254, 631, 665, 837, 1071
FaqI	GGGAC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	1134
FbaI	TGATCA	4 cut(s)	757, 862, 954, 997
Fnu4HI	GCNGC	3 cut(s)	82, 929, 1194
FokI	GGATG	5 cut(s)	17, 561, 783, 894, 1189
Fsp4HI	GCNGC	3 cut(s)	82, 929, 1194
FspBI	CTAG	1 cut(s)	1022
GluI	GCNGC	3 cut(s)	82, 929, 1194
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	4 cut(s)	531, 913, 1165, 1196
HapII	CCGG	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	1065
HinfI	GANTC	9 cut(s)	144, 442, 611, 659, 679, 803, 937, 946, 1154
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	5 cut(s)	606, 614, 677, 957, 1133
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	4 cut(s)	70, 227, 297, 487
Hpy188III	TCNNGA	6 cut(s)	266, 571, 800, 952, 992, 1022
Hpy8I	GTNNAC	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	2 cut(s)	589, 989
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	8 cut(s)	81, 276, 499, 744, 769, 895, 928, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 368, 919, 928
HpyF3I	CTNAG	3 cut(s)	182, 537, 1046
HpySE526I	ACGT	1 cut(s)	463
Ksp22I	TGATCA	4 cut(s)	757, 862, 954, 997
LmnI	GCTCC	6 cut(s)	18, 472, 641, 822, 919, 1145
Lsp1109I	GCAGC	2 cut(s)	93, 940
LweI	GCATC	2 cut(s)	872, 1046
MaeI	CTAG	1 cut(s)	1022
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	2 cut(s)	612, 853
MboII	GAAGA	9 cut(s)	115, 118, 173, 202, 217, 254, 302, 405, 891
MfeI	CAATTG	1 cut(s)	923
MflI	RGATCY	2 cut(s)	70, 259
MhlI	GDGCHC	1 cut(s)	469
MluCI	AATT	7 cut(s)	86, 269, 824, 923, 1028, 1087, 1221
MlyI	GAGTC	2 cut(s)	436, 620
MmeI	TCCRAC	1 cut(s)	762
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	134, 135
MunI	CAATTG	1 cut(s)	923
MwoI	GCNNNNNNNGC	4 cut(s)	90, 368, 919, 928
NciI	CCSGG	2 cut(s)	134, 135
NcoI	CCATGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	1134
NlaIV	GGNNCC	2 cut(s)	637, 1147
NmuCI	GTSAC	2 cut(s)	612, 853
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	951
PciI	ACATGT	1 cut(s)	124
PfeI	GAWTC	7 cut(s)	144, 659, 679, 803, 937, 946, 1154
PkrI	GCNGC	3 cut(s)	83, 930, 1195
PleI	GAGTC	2 cut(s)	436, 619
PpsI	GAGTC	2 cut(s)	436, 619
PscI	ACATGT	1 cut(s)	124
PshAI	GACNNNNGTC	2 cut(s)	481, 987
PsiI	TTATAA	2 cut(s)	243, 978
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	637, 1147
PspPI	GGNCC	1 cut(s)	530
PstI	CTGCAG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	70, 259
RsaI	GTAC	6 cut(s)	77, 129, 308, 335, 773, 1131
RsaNI	GTAC	6 cut(s)	76, 128, 307, 334, 772, 1130
SatI	GCNGC	3 cut(s)	82, 929, 1194
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	2 cut(s)	436, 620
ScrFI	CCNGG	2 cut(s)	134, 135
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	872, 1046
SfcI	CTRYAG	4 cut(s)	79, 153, 339, 812
SmaI	CCCGGG	1 cut(s)	135
Sse9I	AATT	7 cut(s)	86, 269, 824, 923, 1028, 1087, 1221
SsiI	CCGC	1 cut(s)	1193
SspI	AATATT	1 cut(s)	1177
SspMI	CTAG	1 cut(s)	1022
StyD4I	CCNGG	2 cut(s)	132, 133
StyI	CCWWGG	5 cut(s)	254, 631, 665, 837, 1071
TaaI	ACNGT	2 cut(s)	589, 989
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	3 cut(s)	210, 508, 902
TasI	AATT	7 cut(s)	86, 269, 824, 923, 1028, 1087, 1221
TatI	WGTACW	3 cut(s)	75, 771, 1129
TauI	GCSGC	1 cut(s)	1196
TfiI	GAWTC	7 cut(s)	144, 659, 679, 803, 937, 946, 1154
TseFI	GTSAC	2 cut(s)	612, 853
TseI	GCWGC	2 cut(s)	81, 928
Tsp45I	GTSAC	2 cut(s)	612, 853
TspDTI	ATGAA	9 cut(s)	125, 174, 315, 537, 634, 950, 1113, 1140, 1151
TspMI	CCCGGG	1 cut(s)	133
XapI	RAATTY	2 cut(s)	86, 1028
XbaI	TCTAGA	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	133
XspI	CTAG	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.