Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

32062182 .. 32063814

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1146200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGATACGCTTTCACATGTACCCCCGGGCTTTCGATTCCATCCCACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGACTGCTTCGAAACCAATTGATTTTGATGTCGTCAGAGATGTTGATCTCTATAAGATTGAGCCGTGGGATCTTGAAGATTTGTGCAAAATAGGAAGTGGTGATCAGAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTACCCTACCGGACATCGATCAAATAGGGCAACAAAAGCCGGGTTTTGGAAAGCTACAGGAAGAGATAAGGCTATTTACAGAGGAAAATTCCTCGTTGGCATGAGAAAGACCTTAGTGTTCTACAAAGGCCGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCATGAATATCGATTAGAAACTAGTGAAAATGGAACTCCCCAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAAAAATTGCCAACAGTGAAGAGAATGGGAGATTACGAGTCACCAAATTGCTATGACCAAGTCCCATTCATTCAACAACTTGATAACTCTCCAAGAACATCAATTTCCCACACTTACGTATCATCACAATATCAGCAGCAGCTACACTATTCACAATGCAAGCCAGAGCTTGATTTGCAGTACAACATGCCACATCATCATCATGACTCTTTTCTCCAGCTCCCTCAATTGGAAAGCCCCAAAGTTCCTCATCAACCAGCTATCCCATATGGTAATTATGTTATTCAGTCTTCCACAGTACTCACACAAGAGGAGCAATTGCATTATTTCTGCCAGCAAAATCCTTTCAACTCATCTGCGTCATCATCAGGACATACGCATTACAACAACACTGATTATCTACAAGCTGTTGATCAAGTGAAGGATTGGCAAGCCCTTGACAAGTATGTTGCATCACAGCTCAGCCATGACCAGCAAGATGCTTCCAAGGAAGTCACAAATTACTCCAATGCAGAAGAAACATTTCATGTGGCTGAACACATTAATATGCTTGCGAATGAAGCTTCCAGAAGGCCAGACTATAATAATAATGGACAGGAGTACTATGCCTCAACATCAACCTCTAGTTGCCAAATTGATCTCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

372

Amino Acids

43.19

Weight (kDa)

6.21

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	8 - 135	1.3e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	159, 392
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	6 cut(s)	21, 200, 227, 647, 765, 1067
AfiI	CCNNNNNNNGG	2 cut(s)	270, 694
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	158, 463, 539, 814
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	8 cut(s)	278, 607, 634, 685, 725, 872, 925, 1028
AluI	AGCT	8 cut(s)	278, 607, 634, 685, 725, 872, 925, 1028
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	159, 392
Ama87I	CYCGRG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	352, 1037
ApeKI	GCWGC	2 cut(s)	601, 604
ApoI	RAATTY	1 cut(s)	311
AseI	ATTAAT	1 cut(s)	1008
Asp700I	GAANNNNTTC	1 cut(s)	987
AsuC2I	CCSGG	3 cut(s)	26, 27, 265
AsuHPI	GGTGA	2 cut(s)	194, 498
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	25
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BbsI	GAAGAC	2 cut(s)	89, 747
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	613, 616
BccI	CCATC	2 cut(s)	48, 435
BceAI	ACGGC	2 cut(s)	130, 339
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	431
BclI	TGATCA	2 cut(s)	184, 877
BcnI	CCSGG	3 cut(s)	26, 27, 265
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	2 cut(s)	411, 1089
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	2 cut(s)	602, 605
BlpI	GCTNAGC	1 cut(s)	926
BlsI	GCNGC	2 cut(s)	603, 606
BmcAI	AGTACT	2 cut(s)	765, 1067
Bme1390I	CCNGG	4 cut(s)	26, 27, 265, 431
BmeT110I	CYCGRG	1 cut(s)	25
BmrFI	CCNGG	4 cut(s)	26, 27, 265, 431
BmsI	GCATC	2 cut(s)	926, 934
BoxI	GACNNNNGTC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	89, 747
BpmI	CTGGAG	1 cut(s)	665
Bpu1102I	GCTNAGC	1 cut(s)	926
Bpu14I	TTCGAA	1 cut(s)	92
BpuMI	CCSGG	3 cut(s)	26, 27, 265
Bsa29I	ATCGAT	2 cut(s)	241, 400
BsaAI	YACGTR	1 cut(s)	583
BsaBI	GATNNNNATC	2 cut(s)	69, 126
BsaJI	CCNNGG	5 cut(s)	24, 25, 146, 429, 951
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 694
Bse8I	GATNNNNATC	2 cut(s)	69, 126
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	2 cut(s)	241, 400
BseDI	CCNNGG	5 cut(s)	24, 25, 146, 429, 951
BseGI	GGATG	2 cut(s)	40, 446
BseJI	GATNNNNATC	2 cut(s)	69, 126
BseLI	CCNNNNNNNGG	2 cut(s)	270, 694
BseMII	CTCAG	1 cut(s)	940
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	2 cut(s)	613, 616
BshFI	GGCC	2 cut(s)	354, 1039
BshVI	ATCGAT	2 cut(s)	241, 400
BsiHKAI	GWGCWC	1 cut(s)	361
BsiHKCI	CYCGRG	1 cut(s)	25
BsiSI	CCGG	3 cut(s)	26, 234, 264
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	270, 694
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	354, 1039
BsoBI	CYCGRG	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
Bsp1720I	GCTNAGC	1 cut(s)	926
BspANI	GGCC	2 cut(s)	354, 1039
BspCNI	CTCAG	1 cut(s)	939
BspDI	ATCGAT	2 cut(s)	241, 400
BspHI	TCATGA	1 cut(s)	667
BspPI	GGATC	2 cut(s)	159, 392
BspT104I	TTCGAA	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	24, 25, 146, 429, 951
BssMI	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
BssT1I	CCWWGG	1 cut(s)	951
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	481, 763
Bst6I	CTCTTC	2 cut(s)	280, 479
BstBAI	YACGTR	1 cut(s)	583
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	626, 800, 897, 1017
BstDEI	CTNAG	3 cut(s)	74, 337, 926
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	40, 446
BstKTI	GATC	7 cut(s)	130, 154, 187, 245, 387, 880, 1105
BstMBI	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 640, 1025
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	2 cut(s)	20, 655
BstPAI	GACNNNNGTC	1 cut(s)	373
BstSCI	CCNGG	4 cut(s)	24, 25, 263, 429
BstSFI	CTRYAG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	613, 616
BstV2I	GAAGAC	2 cut(s)	89, 747
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu15I	ATCGAT	2 cut(s)	241, 400
BsuRI	GGCC	2 cut(s)	354, 1039
BsuTUI	ATCGAT	2 cut(s)	241, 400
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	40, 446
BtsIMutI	CAGTG	2 cut(s)	486, 855
Cac8I	GCNNGC	4 cut(s)	626, 800, 897, 1017
CciI	TCATGA	1 cut(s)	667
Cfr9I	CCCGGG	1 cut(s)	25
ClaI	ATCGAT	2 cut(s)	241, 400
CseI	GACGC	1 cut(s)	813
Csp6I	GTAC	6 cut(s)	20, 199, 226, 646, 764, 1066
CviAII	CATG	8 cut(s)	17, 325, 388, 392, 652, 668, 932, 992
CviQI	GTAC	6 cut(s)	20, 199, 226, 646, 764, 1066
DdeI	CTNAG	3 cut(s)	74, 337, 926
DpnI	GATC	7 cut(s)	129, 153, 186, 244, 386, 879, 1104
DpnII	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
Eam1104I	CTCTTC	2 cut(s)	280, 479
EarI	CTCTTC	2 cut(s)	280, 479
Eco105I	TACGTA	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	8 cut(s)	20, 328, 391, 395, 655, 671, 935, 995
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	8 cut(s)	16, 324, 387, 391, 651, 667, 931, 991
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	2 cut(s)	184, 877
Fnu4HI	GCNGC	2 cut(s)	602, 605
FokI	GGATG	2 cut(s)	27, 453
Fsp4HI	GCNGC	2 cut(s)	602, 605
FspBI	CTAG	2 cut(s)	411, 1089
GluI	GCNGC	2 cut(s)	602, 605
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	354, 1039
HapII	CCGG	3 cut(s)	26, 234, 264
HgaI	GACGC	1 cut(s)	813
Hin1II	CATG	8 cut(s)	20, 328, 391, 395, 655, 671, 935, 995
HindIII	AAGCTT	1 cut(s)	1026
HinfI	GANTC	3 cut(s)	36, 503, 671
HpaII	CCGG	3 cut(s)	26, 234, 264
HphI	GGTGA	2 cut(s)	194, 498
Hpy188I	TCNGA	3 cut(s)	119, 189, 379
Hpy188III	TCNNGA	6 cut(s)	155, 463, 668, 834, 1032, 1108
HpyAV	CCTTC	3 cut(s)	431, 880, 1029
HpyCH4III	ACNGT	2 cut(s)	481, 763
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	7 cut(s)	168, 391, 624, 643, 787, 917, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 640, 1025
HpyF3I	CTNAG	3 cut(s)	74, 337, 926
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	8 cut(s)	20, 328, 391, 395, 655, 671, 935, 995
Ksp22I	TGATCA	2 cut(s)	184, 877
Kzo9I	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
LmnI	GCTCC	3 cut(s)	364, 690, 778
Lsp1109I	GCAGC	2 cut(s)	613, 616
LweI	GCATC	2 cut(s)	926, 934
MaeI	CTAG	2 cut(s)	411, 1089
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	504, 958
MalI	GATC	7 cut(s)	129, 153, 186, 244, 386, 879, 1104
MboI	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
MboII	GAAGA	8 cut(s)	65, 94, 170, 297, 446, 496, 747, 992
MfeI	CAATTG	3 cut(s)	99, 692, 782
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	361
MlyI	GAGTC	2 cut(s)	512, 665
MnlI	CCTC	7 cut(s)	299, 326, 699, 723, 769, 1084, 1096
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	1 cut(s)	1008
MslI	CAYNNNNRTG	2 cut(s)	666, 1010
MspI	CCGG	3 cut(s)	26, 234, 264
MspR9I	CCNGG	4 cut(s)	26, 27, 265, 431
MunI	CAATTG	3 cut(s)	99, 692, 782
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	260, 640, 1025
NciI	CCSGG	3 cut(s)	26, 27, 265
NdeI	CATATG	1 cut(s)	733
NdeII	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
NlaIII	CATG	8 cut(s)	20, 328, 391, 395, 655, 671, 935, 995
NmuCI	GTSAC	2 cut(s)	504, 958
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	2 cut(s)	20, 655
NspV	TTCGAA	1 cut(s)	92
PagI	TCATGA	1 cut(s)	667
PciI	ACATGT	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	603, 606
PleI	GAGTC	2 cut(s)	511, 665
PpsI	GAGTC	2 cut(s)	511, 665
Ppu21I	YACGTR	1 cut(s)	583
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	1 cut(s)	373
PshBI	ATTAAT	1 cut(s)	1008
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	524
RsaI	GTAC	6 cut(s)	21, 200, 227, 647, 765, 1067
RsaNI	GTAC	6 cut(s)	20, 199, 226, 646, 764, 1066
RseI	CAYNNNNRTG	2 cut(s)	666, 1010
SaqAI	TTAA	1 cut(s)	1008
SatI	GCNGC	2 cut(s)	602, 605
Sau3AI	GATC	7 cut(s)	127, 151, 184, 242, 384, 877, 1102
ScaI	AGTACT	2 cut(s)	765, 1067
SchI	GAGTC	2 cut(s)	512, 665
ScrFI	CCNGG	4 cut(s)	26, 27, 265, 431
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	2 cut(s)	926, 934
SfcI	CTRYAG	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	666, 1010
SnaBI	TACGTA	1 cut(s)	583
SpeI	ACTAGT	1 cut(s)	410
SspMI	CTAG	2 cut(s)	411, 1089
StyD4I	CCNGG	4 cut(s)	24, 25, 263, 429
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	2 cut(s)	481, 763
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	34, 92, 241, 400
TatI	WGTACW	3 cut(s)	645, 763, 1065
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	1008
Tru9I	TTAA	1 cut(s)	1008
TscAI	CASTG	2 cut(s)	486, 862
TseFI	GTSAC	2 cut(s)	504, 958
TseI	GCWGC	2 cut(s)	601, 604
Tsp45I	GTSAC	2 cut(s)	504, 958
TspDTI	ATGAA	6 cut(s)	66, 207, 408, 523, 980, 1038
TspMI	CCCGGG	1 cut(s)	25
TspRI	CASTG	2 cut(s)	486, 862
Tth111I	GACNNNGTC	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	1008
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	2 cut(s)	20, 655
XmaI	CCCGGG	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	2 cut(s)	411, 1089
ZrmI	AGTACT	2 cut(s)	765, 1067
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.