Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Reverse (-)

8712146 .. 8713814

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGATACACTTTCACATGTACCCCCAGGCTTTCGATTCCATCCCACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGACTGCTTCGAAACCAATTGATTTTGATGTCGTCAGAGATGTTGATCTCTATAAGATTGAGCCATGGGATCTTGAAGATTTGTGCAAAATAGGAAGTGGTGATCAGAATGAATGGTACTTCTTTAACCATAAAGATAAGAAGTACCCTACCGGACACGATCGATCAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCTACAGGAAGAGATAAGGCTATTTACAGAGGAAAATTCCTTGTTGGCATGAGAAAGACTTTAGTCTTCTACAAGGGCCGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCATGAATATCGACTAGAAACTAGTGAAAATGGAACTCCTCAGGCAAAAGGATGGGTTGTGTGTAGAGTGTTCACGAAAAAATTGCCAACAGTGAGGAGAATGGGAGATTACGAGTCACCAAATTGCTATGACCAAGTCCCATTCATGCAACAACTTGATAACTCTCCAAGAACATCAATTTCCCACACTTACGTATCATCACAATATCAGCAGCAGCTACACTATTCACAATGCAAGCCAGAGCTTGATTTGCAGTACAACATGCCACATCATCATCATGACTCTTTTCTCCAGCTCCCTCAATTGGAAAGCCCCAAAGTTCCTCATCAGCCAGCTACCCCATATGGTAATTATGTTATGCAGTCTTCCACACTCACACAAGAGGAGCAATTGCATTACTTCTGCCCGCAAAATCCTTTCAACTCATCTGCGTCGTCATCAGGACATATGCATTACAACAACACTGATTATCTACAAGTTGTTGATCAAGTGAAGGATTGGCGAGCCCTTGACAAGTATGTTGCATCACAGCTCAGCCATGACCAGCAAGATGCTTCCAAGGAAGTCACAAATTACTCCAATGCACAAGAAACATTTCATGTGGCTGAACACATTAATATGCTTGCCAATGAAGCTTCCAGAAGGCCAGACTATAATAATAATGGACAGGAGTACTACGCCTCAACATCAACCTCTAGTTGCCAAATTGATCGATCTGGAAATGATCAAGAACATGAATATTACAGTAACTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

383

Amino Acids

44.51

Weight (kDa)

6.25

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	2 cut(s)	159, 395
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	5 cut(s)	21, 200, 227, 650, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	158, 814
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	8 cut(s)	266, 281, 610, 637, 688, 728, 925, 1028
AluI	AGCT	8 cut(s)	266, 281, 610, 637, 688, 728, 925, 1028
Alw21I	GWGCWC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	159, 395
AlwNI	CAGNNNCTG	1 cut(s)	1143
AoxI	GGCC	2 cut(s)	355, 1037
ApeKI	GCWGC	2 cut(s)	604, 607
ApoI	RAATTY	1 cut(s)	314
AseI	ATTAAT	1 cut(s)	1008
Asp700I	GAANNNNTTC	1 cut(s)	987
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	194, 501
AsuII	TTCGAA	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanII	GRGCYC	1 cut(s)	901
BbsI	GAAGAC	3 cut(s)	89, 337, 750
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	616, 619
BccI	CCATC	2 cut(s)	48, 438
BceAI	ACGGC	1 cut(s)	342
BcgI	CGANNNNNNTGC	4 cut(s)	383, 417, 457, 491
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	3 cut(s)	184, 877, 1117
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	3 cut(s)	407, 414, 1089
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	605, 608
BlpI	GCTNAGC	1 cut(s)	926
BlsI	GCNGC	2 cut(s)	606, 609
BmcAI	AGTACT	1 cut(s)	1067
Bme1390I	CCNGG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	355
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	2 cut(s)	926, 934
BoxI	GACNNNNGTC	2 cut(s)	341, 376
BpiI	GAAGAC	3 cut(s)	89, 337, 750
BpmI	CTGGAG	1 cut(s)	668
Bpu1102I	GCTNAGC	1 cut(s)	926
Bpu14I	TTCGAA	1 cut(s)	92
Bsa29I	ATCGAT	2 cut(s)	244, 1105
BsaAI	YACGTR	1 cut(s)	586
BsaBI	GATNNNNATC	2 cut(s)	69, 126
BsaJI	CCNNGG	3 cut(s)	25, 146, 951
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	69, 126
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	2 cut(s)	244, 1105
BseDI	CCNNGG	3 cut(s)	25, 146, 951
BseGI	GGATG	2 cut(s)	40, 449
BseJI	GATNNNNATC	2 cut(s)	69, 126
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMII	CTCAG	2 cut(s)	446, 940
BseRI	GAGGAG	3 cut(s)	420, 502, 791
BseXI	GCAGC	2 cut(s)	616, 619
BseYI	CCCAGC	1 cut(s)	266
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	357, 1039
BshVI	ATCGAT	2 cut(s)	244, 1105
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	357, 1039
Bsp119I	TTCGAA	1 cut(s)	92
Bsp1286I	GDGCHC	2 cut(s)	364, 901
Bsp1720I	GCTNAGC	1 cut(s)	926
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	2 cut(s)	357, 1039
BspCNI	CTCAG	2 cut(s)	445, 939
BspDI	ATCGAT	2 cut(s)	244, 1105
BspHI	TCATGA	1 cut(s)	670
BspPI	GGATC	2 cut(s)	159, 395
BspT104I	TTCGAA	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	25, 146, 951
BssT1I	CCWWGG	2 cut(s)	146, 951
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	484, 1139, 1145
Bst6I	CTCTTC	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	5 cut(s)	629, 726, 800, 897, 1017
BstDEI	CTNAG	3 cut(s)	74, 432, 926
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	40, 449
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 643, 1025
BstNI	CCWGG	1 cut(s)	27
BstNSI	RCATGY	2 cut(s)	20, 658
BstPAI	GACNNNNGTC	2 cut(s)	341, 376
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	282
BstSNI	TACGTA	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	616, 619
BstV2I	GAAGAC	3 cut(s)	89, 337, 750
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu15I	ATCGAT	2 cut(s)	244, 1105
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	357, 1039
BsuTUI	ATCGAT	2 cut(s)	244, 1105
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	40, 449
BtsIMutI	CAGTG	2 cut(s)	489, 855
Cac8I	GCNNGC	5 cut(s)	629, 726, 800, 897, 1017
CaiI	CAGNNNCTG	1 cut(s)	1143
CciI	TCATGA	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	355
ClaI	ATCGAT	2 cut(s)	244, 1105
CseI	GACGC	1 cut(s)	813
Csp6I	GTAC	5 cut(s)	20, 199, 226, 649, 1066
CviQI	GTAC	5 cut(s)	20, 199, 226, 649, 1066
DdeI	CTNAG	3 cut(s)	74, 432, 926
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco105I	TACGTA	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	146, 951
Eco24I	GRGCYC	1 cut(s)	901
Eco81I	CCTNAGG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	146, 951
EcoT22I	ATGCAT	2 cut(s)	396, 846
EcoT38I	GRGCYC	1 cut(s)	901
ErhI	CCWWGG	2 cut(s)	146, 951
FaqI	GGGAC	1 cut(s)	515
FauI	CCCGC	1 cut(s)	807
FauNDI	CATATG	2 cut(s)	736, 840
FbaI	TGATCA	3 cut(s)	184, 877, 1117
Fnu4HI	GCNGC	2 cut(s)	605, 608
FokI	GGATG	2 cut(s)	27, 456
FriOI	GRGCYC	1 cut(s)	901
Fsp4HI	GCNGC	2 cut(s)	605, 608
FspBI	CTAG	3 cut(s)	407, 414, 1089
GluI	GCNGC	2 cut(s)	605, 608
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	2 cut(s)	357, 1039
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	1026
HinfI	GANTC	3 cut(s)	36, 506, 674
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	2 cut(s)	194, 501
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	119, 189, 382
Hpy188III	TCNNGA	7 cut(s)	155, 466, 671, 834, 1032, 1110, 1121
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	829
HpyAV	CCTTC	2 cut(s)	880, 1029
HpyCH4III	ACNGT	3 cut(s)	484, 1139, 1145
HpyCH4IV	ACGT	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 643, 1025
HpyF3I	CTNAG	3 cut(s)	74, 432, 926
HpySE526I	ACGT	1 cut(s)	585
Ksp22I	TGATCA	3 cut(s)	184, 877, 1117
LmnI	GCTCC	3 cut(s)	367, 693, 778
Lsp1109I	GCAGC	2 cut(s)	616, 619
LweI	GCATC	2 cut(s)	926, 934
MaeI	CTAG	3 cut(s)	407, 414, 1089
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	507, 958, 1139
MboII	GAAGA	6 cut(s)	65, 94, 170, 300, 337, 750
MfeI	CAATTG	3 cut(s)	99, 695, 782
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	364, 901
MlyI	GAGTC	2 cut(s)	515, 668
MnlI	CCTC	8 cut(s)	302, 441, 480, 702, 726, 769, 1084, 1096
Mph1103I	ATGCAT	2 cut(s)	396, 846
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	2 cut(s)	207, 1008
MslI	CAYNNNNRTG	2 cut(s)	669, 1010
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	3 cut(s)	99, 695, 782
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	263, 643, 1025
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	2 cut(s)	736, 840
NmuCI	GTSAC	2 cut(s)	507, 958
NsiI	ATGCAT	2 cut(s)	396, 846
NspI	RCATGY	2 cut(s)	20, 658
NspV	TTCGAA	1 cut(s)	92
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	606, 609
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	2 cut(s)	514, 668
PpsI	GAGTC	2 cut(s)	514, 668
Ppu21I	YACGTR	1 cut(s)	586
PscI	ACATGT	1 cut(s)	16
PshAI	GACNNNNGTC	2 cut(s)	341, 376
PshBI	ATTAAT	1 cut(s)	1008
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	1143
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	527
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	5 cut(s)	21, 200, 227, 650, 1067
RsaNI	GTAC	5 cut(s)	20, 199, 226, 649, 1066
RseI	CAYNNNNRTG	2 cut(s)	669, 1010
SaqAI	TTAA	2 cut(s)	207, 1008
SatI	GCNGC	2 cut(s)	605, 608
Sau96I	GGNCC	1 cut(s)	355
ScaI	AGTACT	1 cut(s)	1067
SchI	GAGTC	2 cut(s)	515, 668
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	364, 901
SfaNI	GCATC	2 cut(s)	926, 934
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	669, 1010
SnaBI	TACGTA	1 cut(s)	586
SpeI	ACTAGT	1 cut(s)	413
SsiI	CCGC	1 cut(s)	800
SspI	AATATT	1 cut(s)	1133
SspMI	CTAG	3 cut(s)	407, 414, 1089
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	2 cut(s)	146, 951
TaaI	ACNGT	3 cut(s)	484, 1139, 1145
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	5 cut(s)	34, 92, 244, 403, 1105
TatI	WGTACW	2 cut(s)	648, 1065
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	2 cut(s)	207, 1008
Tru9I	TTAA	2 cut(s)	207, 1008
TscAI	CASTG	2 cut(s)	489, 862
TseFI	GTSAC	2 cut(s)	507, 958
TseI	GCWGC	2 cut(s)	604, 607
Tsp45I	GTSAC	2 cut(s)	507, 958
TspDTI	ATGAA	7 cut(s)	66, 207, 411, 526, 980, 1038, 1143
TspRI	CASTG	2 cut(s)	489, 862
Tth111I	GACNNNGTC	1 cut(s)	527
VspI	ATTAAT	1 cut(s)	1008
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	2 cut(s)	20, 658
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	3 cut(s)	407, 414, 1089
ZrmI	AGTACT	1 cut(s)	1067
Zsp2I	ATGCAT	2 cut(s)	396, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.