Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

17661538 .. 17664937

Gene Structure 3400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG196200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGTGATTATGAGTCACCATGTTGGTATGACCAAGGCTCCTCATTCATGCCCGAACTTGATTCTCCAAGGACAAATATGATTCCTCACCCTGCTTATACAACATCATCATCATCATCATATCATCACCAGCTTTACTCCAACTGCAAACAAGAACTTGATCATCATTTGCAGTACAATGCTATGCCTGTGCCTCCCCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGGCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCCATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

4.76

Isoelectric Point (pI)

68.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	2 cut(s)	176, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	4 cut(s)	133, 220, 448, 470
AluI	AGCT	4 cut(s)	133, 220, 448, 470
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	2 cut(s)	314, 566
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	1 cut(s)	431
AsuHPI	GGTGA	6 cut(s)	9, 17, 80, 119, 360, 536
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	207, 307
BclI	TGATCA	4 cut(s)	160, 265, 357, 400
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	332, 597
BlpI	GCTNAGC	1 cut(s)	449
BlsI	GCNGC	2 cut(s)	333, 598
BmiI	GGNNCC	2 cut(s)	40, 550
BmsI	GCATC	2 cut(s)	275, 449
BoxI	GACNNNNGTC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	34, 68, 240, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
BseDI	CCNNGG	4 cut(s)	34, 68, 240, 474
BseGI	GGATG	3 cut(s)	199, 290, 605
BseMII	CTCAG	1 cut(s)	463
BseRI	GAGGAG	3 cut(s)	31, 335, 355
BseXI	GCAGC	1 cut(s)	343
BshFI	GGCC	2 cut(s)	316, 568
BsnI	GGCC	2 cut(s)	316, 568
Bsp143I	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
Bsp1720I	GCTNAGC	1 cut(s)	449
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	2 cut(s)	316, 568
BspCNI	CTCAG	1 cut(s)	462
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	40, 550
BspPI	GGATC	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	34, 68, 240, 474
BssMI	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
BssT1I	CCWWGG	4 cut(s)	34, 68, 240, 474
Bst4CI	ACNGT	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	199, 290, 605
BstKTI	GATC	6 cut(s)	163, 268, 360, 403, 517, 631
BstMBI	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 331
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	316, 568
BtsCI	GGATG	3 cut(s)	199, 290, 605
CciI	TCATGA	1 cut(s)	354
Csp6I	GTAC	2 cut(s)	175, 533
CviAII	CATG	5 cut(s)	21, 49, 290, 355, 455
CviQI	GTAC	2 cut(s)	175, 533
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	6 cut(s)	162, 267, 359, 402, 516, 630
DpnII	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
Eco130I	CCWWGG	4 cut(s)	34, 68, 240, 474
EcoT14I	CCWWGG	4 cut(s)	34, 68, 240, 474
ErhI	CCWWGG	4 cut(s)	34, 68, 240, 474
FaeI	CATG	5 cut(s)	24, 52, 293, 358, 458
FatI	CATG	5 cut(s)	20, 48, 289, 354, 454
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	4 cut(s)	160, 265, 357, 400
Fnu4HI	GCNGC	2 cut(s)	332, 597
FokI	GGATG	3 cut(s)	186, 297, 592
Fsp4HI	GCNGC	2 cut(s)	332, 597
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	332, 597
HaeIII	GGCC	2 cut(s)	316, 568
Hin1II	CATG	5 cut(s)	24, 52, 293, 358, 458
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	7 cut(s)	14, 62, 82, 206, 340, 349, 557
HphI	GGTGA	6 cut(s)	9, 17, 80, 119, 360, 536
Hpy188III	TCNNGA	4 cut(s)	203, 355, 395, 425
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	147, 172, 331, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 331
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	5 cut(s)	24, 52, 293, 358, 458
Ksp22I	TGATCA	4 cut(s)	160, 265, 357, 400
Kzo9I	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
LmnI	GCTCC	4 cut(s)	44, 225, 322, 548
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	275, 449
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	6 cut(s)	162, 267, 359, 402, 516, 630
MboI	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
MboII	GAAGA	1 cut(s)	294
MfeI	CAATTG	1 cut(s)	326
MluCI	AATT	5 cut(s)	227, 326, 431, 490, 624
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	52, 96, 204, 234, 313, 376, 558, 610
MunI	CAATTG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	322, 331
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
NlaIII	CATG	5 cut(s)	24, 52, 293, 358, 458
NlaIV	GGNNCC	2 cut(s)	40, 550
NmuCI	GTSAC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	354
PfeI	GAWTC	6 cut(s)	62, 82, 206, 340, 349, 557
PkrI	GCNGC	2 cut(s)	333, 598
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PshAI	GACNNNNGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	40, 550
RsaI	GTAC	2 cut(s)	176, 534
RsaNI	GTAC	2 cut(s)	175, 533
SatI	GCNGC	2 cut(s)	332, 597
Sau3AI	GATC	6 cut(s)	160, 265, 357, 400, 514, 628
SchI	GAGTC	1 cut(s)	23
SetI	ASST	5 cut(s)	135, 222, 246, 450, 472
SfaNI	GCATC	2 cut(s)	275, 449
SfcI	CTRYAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	227, 326, 431, 490, 624
SsiI	CCGC	1 cut(s)	597
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	425
StyI	CCWWGG	4 cut(s)	34, 68, 240, 474
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	305
TasI	AATT	5 cut(s)	227, 326, 431, 490, 624
TatI	WGTACW	2 cut(s)	174, 532
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	6 cut(s)	62, 82, 206, 340, 349, 557
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	37, 353, 516, 543, 554
XapI	RAATTY	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	424
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.