RchiOBHm_Chr7g0202191
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008211
Physical Location & Seq
Forward (+)
19848151 .. 19848846
696 bp
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UTR
Exon/CDS
Intron
PRQ18101

Sequence Viewer

Length: 540 bp
ATGTTTAATTATTCTTGTAAAATATGTGCAGGTTTGAAGAACATGAATACCTTTTCACATGTACCCCCGGGCTTTAGATTCCACCCTACAGATGAAGAACTTGTTGATTATTATCTTAGAAAGAAGATTGCTTCAAAGAAGATCGACCTTGATGTCATCAGAGATGTTGATCTTTATAAGATTGAGCCATGGGATCTTCAAGAATTGTGCAAAATAGGGACTGAAGATCAGAATGAATGGTACTTTTTCAGCCACAAAGATAAAAAGTACCCTACAGGAACTCGCACAAATAGGGCAACAAAAGCTGGGTTTTGGAAAGCAACTGGAAGAGATAAAGCTATTTACATTAGGCACAACCTTGTTGGCATGAGAAAGACTCTGGTGTTTTACAAAGGACGTGCTCCAAATGGACAGAAGTCAGATTGGATCATGCACGAGTATCGACTTGAAACTAATGAAAATGGCCCTCCTCAGGCAAGTATTTTTATATCTCTCCTCACTCTACAACAATTTCTTCACGCTCTAGCTTTTAAGCTGTAA

Protein Analysis

179

Amino Acids

21.03

Weight (kDa)

9.35

Isoelectric Point (pI)

25.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 22 - 149 2e-49 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AasI GACNNNNNNGTC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 201, 434
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 63, 242, 269
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 4 cut(s) 37, 135, 200, 449
AjiI CACGTC 1 cut(s) 398
AluBI AGCT 4 cut(s) 305, 338, 527, 535
AluI AGCT 4 cut(s) 305, 338, 527, 535
Alw21I GWGCWC 1 cut(s) 403
AlwI GGATC 2 cut(s) 201, 434
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 2 cut(s) 68, 69
AvaI CYCGRG 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 471
BauI CACGAG 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 422, 456
BcnI CCSGG 2 cut(s) 68, 69
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 87, 273
BfuAI ACCTGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 68, 69
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 464
BmrFI CCNGG 2 cut(s) 68, 69
BoxI GACNNNNGTC 1 cut(s) 415
BplI GAGNNNNNCTC 2 cut(s) 361, 393
BpuMI CCSGG 2 cut(s) 68, 69
BsaBI GATNNNNATC 2 cut(s) 111, 168
BsaJI CCNNGG 3 cut(s) 66, 67, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 328
Bse21I CCTNAGG 1 cut(s) 471
Bse8I GATNNNNATC 2 cut(s) 111, 168
BseDI CCNNGG 3 cut(s) 66, 67, 188
BseJI GATNNNNATC 2 cut(s) 111, 168
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 2 cut(s) 459, 485
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 472
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 465
BsoBI CYCGRG 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 5 cut(s) 141, 169, 193, 226, 426
Bsp19I CCATGG 1 cut(s) 188
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 2 cut(s) 201, 434
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 66, 67, 188
BssMI GATC 5 cut(s) 141, 169, 193, 226, 426
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 116, 471
BstDSI CCRYGG 1 cut(s) 188
BstKTI GATC 5 cut(s) 144, 172, 196, 229, 429
BstMBI GATC 5 cut(s) 141, 169, 193, 226, 426
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 66, 67
BstSFI CTRYAG 2 cut(s) 87, 273
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 398
BveI ACCTGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 464
Cfr9I CCCGGG 1 cut(s) 67
Csp6I GTAC 3 cut(s) 62, 241, 268
CviAII CATG 5 cut(s) 43, 59, 189, 367, 430
CviJI RGCY 8 cut(s) 72, 187, 252, 305, 338, 465, 527, 535
CviKI_1 RGCY 8 cut(s) 72, 187, 252, 305, 338, 465, 527, 535
CviQI GTAC 3 cut(s) 62, 241, 268
DdeI CTNAG 2 cut(s) 116, 471
DpnI GATC 5 cut(s) 143, 171, 195, 228, 428
DpnII GATC 5 cut(s) 141, 169, 193, 226, 426
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 243
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 5 cut(s) 46, 62, 192, 370, 433
FaiI YATR 8 cut(s) 25, 44, 60, 177, 190, 368, 431, 488
FaqI GGGAC 1 cut(s) 232
FatI CATG 5 cut(s) 42, 58, 188, 366, 429
FspBI CTAG 1 cut(s) 524
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 1 cut(s) 465
HapII CCGG 1 cut(s) 68
Hin1II CATG 5 cut(s) 46, 62, 192, 370, 433
HinfI GANTC 2 cut(s) 78, 376
HpaII CCGG 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 161, 231, 421
Hpy188III TCNNGA 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 3 cut(s) 29, 210, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 2 cut(s) 116, 471
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 5 cut(s) 46, 62, 192, 370, 433
Kzo9I GATC 5 cut(s) 141, 169, 193, 226, 426
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 15, 81, 261, 291, 309, 365, 458
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 397
MalI GATC 5 cut(s) 143, 171, 195, 228, 428
MboI GATC 5 cut(s) 141, 169, 193, 226, 426
MboII GAAGA 8 cut(s) 49, 107, 136, 151, 188, 236, 339, 506
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 3 cut(s) 7, 203, 509
MlyI GAGTC 1 cut(s) 370
MnlI CCTC 3 cut(s) 477, 480, 506
MseI TTAA 2 cut(s) 6, 531
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 68, 69
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 2 cut(s) 68, 69
NcoI CCATGG 1 cut(s) 188
NdeII GATC 5 cut(s) 141, 169, 193, 226, 426
NlaIII CATG 5 cut(s) 46, 62, 192, 370, 433
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PfeI GAWTC 1 cut(s) 78
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 1 cut(s) 58
PshAI GACNNNNGTC 1 cut(s) 415
PsiI TTATAA 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 3 cut(s) 63, 242, 269
RsaNI GTAC 3 cut(s) 62, 241, 268
SaqAI TTAA 2 cut(s) 6, 531
Sau3AI GATC 5 cut(s) 141, 169, 193, 226, 426
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 68, 69
SduI GDGCHC 1 cut(s) 403
SetI ASST 9 cut(s) 34, 53, 150, 307, 340, 360, 400, 529, 537
SfcI CTRYAG 2 cut(s) 87, 273
SmaI CCCGGG 1 cut(s) 69
Sse9I AATT 3 cut(s) 7, 203, 509
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 66, 67
StyI CCWWGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 144, 442
TasI AATT 3 cut(s) 7, 203, 509
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 6, 531
Tru9I TTAA 2 cut(s) 6, 531
TspDTI ATGAA 4 cut(s) 59, 108, 249, 471
TspMI CCCGGG 1 cut(s) 67
XceI RCATGY 1 cut(s) 62
XmaI CCCGGG 1 cut(s) 67
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.