Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008211

Physical Location & Seq

Genomic Coordinates Forward (+)

16206103 .. 16206561

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG197500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCCTGTGCCTCCTCATCCTGATTCTTTTCTACAGCTCCCTCAATTAGAAAGCCCCAAGGTTGCTCAATATGGCACTTATGATCATCATAGGAACAATGGATGCCATGTAATGCCATCTTCGACATTCAGGCCAGAGGAGCAATTGCAGCAGATGAATCAACAGAATCTCATGATCAACTCCTCACCACTACTTTATAATGACAACAGTCTTGATGATCAACTGACAGATTGGCGAGTTCTAGACAAATTTGTTGCATCACAGCTCAGCCATGACCAGCAAGAAGCTTCCAAGGAAACAACAACAAATTACTCAAATGAAGCAGTATTTGATCCTGTGGGTGATGAAGTACATATGAATATGGGAGCCAACGAATCCAAGAGGCCAGAAAATAATATTGGACAGGACTATGCCGCCTCAACATCCACATCAAGTTGCCAAATTGATCTGTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

4.62

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12260 AT1G12260 AT1G62700 AT1G62700
fragaria_vesca	FvH4_5g00350 FvH4_5g00351
malus_domestica	MD00G1117000.v1.1 MD00G1146200.v1.1
prunus_persica	Prupe.5G076100_v2.0.a1 Prupe.5G076100_v2.0.a1
pyrus_communis	pycom04g07440 pycom06g05780
rosa_chinensis	RchiOBHm_Chr7g0202191 RchiOBHm_Chr7g0202201
rosa_laevigata	RLG00000003617
rosa_multiflora	Rmu_sc0005017.1_g000005
rosa_roxburghii	Rroxscaffold_3G00254750
rosa_rugosa	Rorug07G0068900
rosa_samantha	Rh7AG196200 Rh7BG197500 Rh7CG207400 Rh7DG202900
rosa_wichuraiana	Rw7G017180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	248
AfaI	GTAC	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	3 cut(s)	37, 265, 287
AluI	AGCT	3 cut(s)	37, 265, 287
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	131, 383
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	177, 353
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	124
BclI	TGATCA	3 cut(s)	82, 174, 217
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	149, 414
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	2 cut(s)	150, 415
BmiI	GGNNCC	1 cut(s)	367
BmsI	GCATC	2 cut(s)	92, 266
BoxI	GACNNNNGTC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	57, 291
BseDI	CCNNGG	2 cut(s)	57, 291
BseGI	GGATG	3 cut(s)	16, 107, 422
BseMII	CTCAG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	152, 172
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	133, 385
BsnI	GGCC	2 cut(s)	133, 385
Bsp143I	GATC	5 cut(s)	82, 174, 217, 331, 445
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	133, 385
BspCNI	CTCAG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	57, 291
BssMI	GATC	5 cut(s)	82, 174, 217, 331, 445
BssT1I	CCWWGG	2 cut(s)	57, 291
Bst4CI	ACNGT	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	3 cut(s)	16, 107, 422
BstKTI	GATC	5 cut(s)	85, 177, 220, 334, 448
BstMBI	GATC	5 cut(s)	82, 174, 217, 331, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 148
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	133, 385
BtsCI	GGATG	3 cut(s)	16, 107, 422
CciI	TCATGA	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	107, 172, 272
CviJI	RGCY	8 cut(s)	37, 54, 133, 265, 270, 287, 368, 385
CviKI_1	RGCY	8 cut(s)	37, 54, 133, 265, 270, 287, 368, 385
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	5 cut(s)	84, 176, 219, 333, 447
DpnII	GATC	5 cut(s)	82, 174, 217, 331, 445
Eco130I	CCWWGG	2 cut(s)	57, 291
EcoT14I	CCWWGG	2 cut(s)	57, 291
ErhI	CCWWGG	2 cut(s)	57, 291
FaeI	CATG	3 cut(s)	110, 175, 275
FatI	CATG	3 cut(s)	106, 171, 271
FauNDI	CATATG	1 cut(s)	354
FbaI	TGATCA	3 cut(s)	82, 174, 217
Fnu4HI	GCNGC	2 cut(s)	149, 414
FokI	GGATG	3 cut(s)	3, 114, 409
Fsp4HI	GCNGC	2 cut(s)	149, 414
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	2 cut(s)	149, 414
HaeIII	GGCC	2 cut(s)	133, 385
Hin1II	CATG	3 cut(s)	110, 175, 275
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	4 cut(s)	23, 157, 166, 374
HphI	GGTGA	2 cut(s)	177, 353
Hpy188III	TCNNGA	4 cut(s)	20, 172, 212, 242
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	148, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 148
HpyF3I	CTNAG	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	110, 175, 275
Ksp22I	TGATCA	3 cut(s)	82, 174, 217
Kzo9I	GATC	5 cut(s)	82, 174, 217, 331, 445
LmnI	GCTCC	3 cut(s)	42, 139, 365
LpnPI	CCDG	8 cut(s)	18, 33, 115, 147, 290, 348, 389, 399
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	92, 266
MaeI	CTAG	1 cut(s)	242
MalI	GATC	5 cut(s)	84, 176, 219, 333, 447
MboI	GATC	5 cut(s)	82, 174, 217, 331, 445
MboII	GAAGA	1 cut(s)	111
MfeI	CAATTG	1 cut(s)	143
MluCI	AATT	5 cut(s)	44, 143, 248, 307, 441
MnlI	CCTC	7 cut(s)	21, 24, 51, 130, 193, 375, 427
MunI	CAATTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	139, 148
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	5 cut(s)	82, 174, 217, 331, 445
NlaIII	CATG	3 cut(s)	110, 175, 275
NlaIV	GGNNCC	1 cut(s)	367
PagI	TCATGA	1 cut(s)	171
PfeI	GAWTC	4 cut(s)	23, 157, 166, 374
PkrI	GCNGC	2 cut(s)	150, 415
PshAI	GACNNNNGTC	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SatI	GCNGC	2 cut(s)	149, 414
Sau3AI	GATC	5 cut(s)	82, 174, 217, 331, 445
SetI	ASST	4 cut(s)	39, 63, 267, 289
SfaNI	GCATC	2 cut(s)	92, 266
SfcI	CTRYAG	1 cut(s)	32
Sse9I	AATT	5 cut(s)	44, 143, 248, 307, 441
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	242
StyI	CCWWGG	2 cut(s)	57, 291
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	44, 143, 248, 307, 441
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	4 cut(s)	23, 157, 166, 374
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	170, 333, 360, 371
XapI	RAATTY	1 cut(s)	248
XbaI	TCTAGA	1 cut(s)	241
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.