Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Forward (+)

4547388 .. 4548894

Gene Structure 1507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G13280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATCATGGCTTCTTCTGCTGCTGCATCGATCTCTATGATAACTCTAAGGAACCTCTCTCGCAATCATCAATCTCACCAAAGCACTTTTCTCGGTTTCTCTAGATCCTTCCATAACCAAAGGATCTCATCTAACAGTCCAGGTCTCTCCACACGAGCAAGATCCACCACTTCCTCCACTGGAGGTTTCTTCAGAACCATTTGCAGCAGCAGTAGCAATGACTACTCCAGACCAACTAAGATCCAAGAGCTTAACGTCTACGAGTTCAACGAAGGTGATCGAAACAGTCCAGCGGTTTTAAAACTAGGGAAAAAACCAGATCAGCTTTGTCTCGGAGATCTTGTCCCCTTCACAAACAAACTCTACACAGGAGATCTCACAAAACGCATAGGAATCACCGCAGGTCTCTGCGTTTTGATCCAACATGTTCCAGAGAAGAAAGGTGATCGCTTTGAAGCTTCTTACAGTTTCTACTTCGGAGATTATGGTCACATATCAGTTCAAGGACCTTATCTCACTTACGAGGACACGTTTCTTGCTATCACCGGTGGCTCCGGCGTGTTTGAAGGAGCTTATGGACAGGTCAAGCTTCGTCAGCTTGTGTATCCTACGAAGCTGTTTTACACTTTCTACTTGAAAGGTGTTGCTGCTGATTTACCTGTGGAGCTTACCGGAAAACATGTTGAGCCGTCGAAGGAAGTGAAACCGGCGGCTGAAGCTCAGGCGACTCAGCCCGGCGCTACGATCGCTAACTTTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006082 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009694 GO:0009695 GO:0009941 GO:0009975 GO:0009987 GO:0010319 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0031090 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0042445 GO:0042446 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046423 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:0098588 GO:0098805 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

254

Amino Acids

27.81

Weight (kDa)

9.15

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	77 - 252	2.6e-95	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	3 cut(s)	293, 399, 710
AclWI	GGATC	5 cut(s)	99, 131, 156, 235, 412
AcuI	CTGAAG	2 cut(s)	175, 735
AflIII	ACRYGT	3 cut(s)	424, 528, 679
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	5 cut(s)	268, 455, 503, 566, 637
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	9 cut(s)	250, 325, 458, 572, 589, 598, 616, 667, 719
AluI	AGCT	9 cut(s)	250, 325, 458, 572, 589, 598, 616, 667, 719
Alw26I	GTCTC	3 cut(s)	149, 335, 410
AlwI	GGATC	5 cut(s)	99, 131, 156, 235, 412
ApeKI	GCWGC	5 cut(s)	20, 23, 204, 207, 647
AsiGI	ACCGGT	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	5 cut(s)	68, 287, 388, 455, 535
AvaII	GGWCC	1 cut(s)	506
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
BauI	CACGAG	1 cut(s)	153
BbvI	GCAGC	5 cut(s)	7, 10, 216, 219, 634
BceAI	ACGGC	1 cut(s)	673
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	1 cut(s)	141
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	3 cut(s)	149, 335, 410
BfaI	CTAG	2 cut(s)	102, 305
BfoI	RGCGCY	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	615
BglII	AGATCT	2 cut(s)	337, 373
BisI	GCNGC	6 cut(s)	21, 24, 205, 208, 648, 711
BlsI	GCNGC	6 cut(s)	22, 25, 206, 209, 649, 712
Bme1390I	CCNGG	2 cut(s)	141, 735
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	53, 553
BmrFI	CCNGG	2 cut(s)	141, 735
BmsI	GCATC	1 cut(s)	35
BpmI	CTGGAG	2 cut(s)	201, 211
Bpu10I	CCTNAGC	1 cut(s)	720
BpuMI	CCSGG	1 cut(s)	735
Bsa29I	ATCGAT	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	149, 410
BsaWI	WCCGGW	2 cut(s)	545, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bse118I	RCCGGY	2 cut(s)	545, 706
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	2 cut(s)	734, 743
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	5 cut(s)	7, 10, 216, 219, 634
Bsh1285I	CGRYCG	1 cut(s)	747
BshTI	ACCGGT	1 cut(s)	545
BshVI	ATCGAT	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	747
BsiSI	CCGG	5 cut(s)	546, 555, 672, 707, 735
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	3 cut(s)	149, 335, 410
BsmFI	GGGAC	1 cut(s)	329
Bso31I	GGTCTC	2 cut(s)	149, 410
BspACI	CCGC	3 cut(s)	293, 399, 710
BspCNI	CTCAG	2 cut(s)	733, 742
BspDI	ATCGAT	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	53, 553
BspMI	ACCTGC	1 cut(s)	392
BspPI	GGATC	5 cut(s)	99, 131, 156, 235, 412
BspTNI	GGTCTC	2 cut(s)	149, 410
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	2 cut(s)	545, 706
BsrI	ACTGG	1 cut(s)	184
BssAI	RCCGGY	2 cut(s)	545, 706
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	137, 287, 467
BstDEI	CTNAG	4 cut(s)	47, 237, 720, 729
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	1 cut(s)	740
BstMAI	GTCTC	3 cut(s)	149, 335, 410
BstMCI	CGRYCG	1 cut(s)	747
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 213, 595, 716, 746
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	428, 683
BstSCI	CCNGG	2 cut(s)	139, 733
BstV1I	GCAGC	5 cut(s)	7, 10, 216, 219, 634
BstX2I	RGATCY	6 cut(s)	104, 123, 161, 240, 337, 373
BstYI	RGATCY	6 cut(s)	104, 123, 161, 240, 337, 373
Bsu15I	ATCGAT	1 cut(s)	29
BsuI	GTATCC	1 cut(s)	615
BsuTUI	ATCGAT	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	392
CfoI	GCGC	1 cut(s)	740
Cfr10I	RCCGGY	2 cut(s)	545, 706
Cfr13I	GGNCC	1 cut(s)	506
ClaI	ATCGAT	1 cut(s)	29
CspAI	ACCGGT	1 cut(s)	545
CviAII	CATG	3 cut(s)	7, 425, 680
DdeI	CTNAG	4 cut(s)	47, 237, 720, 729
DraI	TTTAAA	1 cut(s)	300
Eco31I	GGTCTC	2 cut(s)	149, 410
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	2 cut(s)	175, 735
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	139
FaeI	CATG	3 cut(s)	10, 428, 683
FaiI	YATR	9 cut(s)	8, 38, 114, 389, 426, 486, 494, 576, 681
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	6, 424, 679
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	6 cut(s)	21, 24, 205, 208, 648, 711
Fsp4HI	GCNGC	6 cut(s)	21, 24, 205, 208, 648, 711
FspBI	CTAG	2 cut(s)	102, 305
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	6 cut(s)	21, 24, 205, 208, 648, 711
GsuI	CTGGAG	2 cut(s)	201, 211
HaeII	RGCGCY	1 cut(s)	741
HapII	CCGG	5 cut(s)	546, 555, 672, 707, 735
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	3 cut(s)	10, 428, 683
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HindIII	AAGCTT	2 cut(s)	456, 587
HinfI	GANTC	2 cut(s)	393, 727
HpaII	CCGG	5 cut(s)	546, 555, 672, 707, 735
HphI	GGTGA	5 cut(s)	68, 287, 388, 455, 535
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	194, 335, 479
Hpy188III	TCNNGA	3 cut(s)	102, 228, 431
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	5 cut(s)	118, 266, 358, 560, 688
HpyCH4III	ACNGT	3 cut(s)	137, 287, 467
HpyCH4IV	ACGT	2 cut(s)	255, 530
HpyCH4V	TGCA	2 cut(s)	26, 204
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 213, 595, 716, 746
HpyF3I	CTNAG	4 cut(s)	47, 237, 720, 729
HpySE526I	ACGT	2 cut(s)	255, 530
Hsp92II	CATG	3 cut(s)	10, 428, 683
HspAI	GCGC	1 cut(s)	738
Ksp22I	TGATCA	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	557, 569, 664
Lsp1109I	GCAGC	5 cut(s)	7, 10, 216, 219, 634
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	102, 305
MaeII	ACGT	2 cut(s)	255, 530
MaeIII	GTNAC	1 cut(s)	488
MboII	GAAGA	3 cut(s)	6, 181, 448
MflI	RGATCY	6 cut(s)	104, 123, 161, 240, 337, 373
MluCI	AATT	1 cut(s)	760
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	4 cut(s)	65, 176, 184, 517
MseI	TTAA	2 cut(s)	252, 299
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	5 cut(s)	546, 555, 672, 707, 735
MspR9I	CCNGG	2 cut(s)	141, 735
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	5 cut(s)	17, 213, 595, 716, 746
NciI	CCSGG	1 cut(s)	735
NlaIII	CATG	3 cut(s)	10, 428, 683
NlaIV	GGNNCC	2 cut(s)	53, 553
NmuCI	GTSAC	1 cut(s)	488
NspI	RCATGY	2 cut(s)	428, 683
PciI	ACATGT	2 cut(s)	424, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	22, 25, 206, 209, 649, 712
Ple19I	CGATCG	1 cut(s)	747
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PpuMI	RGGWCCY	1 cut(s)	506
PscI	ACATGT	2 cut(s)	424, 679
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	53, 553
PspPI	GGNCC	1 cut(s)	506
PspPPI	RGGWCCY	1 cut(s)	506
PsuI	RGATCY	6 cut(s)	104, 123, 161, 240, 337, 373
PvuI	CGATCG	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	252, 299
SatI	GCNGC	6 cut(s)	21, 24, 205, 208, 648, 711
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	141, 735
SfaNI	GCATC	1 cut(s)	35
SgrAI	CRCCGGYG	1 cut(s)	545
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	1 cut(s)	760
SsiI	CCGC	3 cut(s)	293, 399, 710
SspMI	CTAG	2 cut(s)	102, 305
StyD4I	CCNGG	2 cut(s)	139, 733
TaaI	ACNGT	3 cut(s)	137, 287, 467
TaiI	ACGT	2 cut(s)	258, 533
TaqI	TCGA	3 cut(s)	29, 280, 692
TasI	AATT	1 cut(s)	760
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	252, 299
Tru9I	TTAA	2 cut(s)	252, 299
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	5 cut(s)	20, 23, 204, 207, 647
Tsp45I	GTSAC	1 cut(s)	488
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	506
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	2 cut(s)	428, 683
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	102, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.