Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

46363482 .. 46369731

Gene Structure 6250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0289300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3003 bp

ATGATGAAGAAGAAGGCAATGTCACTCATCCTCTTGGTCTTGGTGATCGCTGTAGACAGGATCTCAGCATATGGTAGTGATCGGGAGCTATCAGTATTGCAAGGTCTCCACCAAAGCCTCGGTCCTAACAGGTTAAATTGGTCGGGTTCTGACTACTGCAGTTGGTTGAATATATCTTGCAACGAGGATGGAATGGTGGGATCGATTAATTTAAGCGGCCAAAACCTGACGGGAACACTGCCTGCCTCTATTGGAAGCTTGAAATATTTGAAGACACTAGATGTTTCTTACAATCAGATAAGTGGACCCTTCCCAGCCCTATATAGTTTGCAGTTGCTTGAAATTCTTCGAGCCCAAAACAACAACTTCTCTTCATTTCCAGAAGAGTTGTTCAGTTCCCAGCTCACAGCCCTCAGTGACATAGATATCAGTTATAATTCATTTGCACCATGGAATATTACTGGTCACTGTGGGGAGCTTCAGTATTTTCATGCTTCAAATGCCAATATTAGGGGAGCGATAGATGTTCTCACCTGCATCAATTTTCCAAGGTTGGTTAGATTGAACTTGTCTAATAACCAGCTGAATGGTACTATACCATTGGACATTAAAGAATTGCAATTTCTAAGAGTGTTGGATCTTTCCAATAACAAACTGAGTGGTCGGGTACCTGAATTTGGGAAAAAGATTCGTGTTAGATTAGATGGAAACCTGGATCTAAAGTGGGACACTGGCCATTCCCATCACGCTGTGCTCCTTATAGTGATTGGTTGTGTTGGTGGGCTGCTTATTGTAGTGATCGGGATTGTTGGTCTAATATTTTACCTTAAGAAAAAACAACTCCCATCCGGTGAGCAAAATGTGGTAGAGCTCACTGCTAACCCTAGCACGCAATCTAGTCAAGCCATTGATGTGCATTCAAGTCAAGCCCTTGATGTTATTGCGCTTAAACAGTTTTCCCTTGAGAACTTGATGATGGCTACTATTAGTTTTACTGAAGCCAATCTTTTGGGAAAAGGGGGATTTGCAAAGGTTTTTAAAGGAGTTTGGGAGAACACAGAAATTGCAGTGAAGAGGATGAACAAGATACGGTCGGGAGTGGAGGCTAGTAATGCTTTAGATATGTTCAAGTCGGAGGTTGAATTGCTTTCCAAACTCCAACACAGAAACTTAGTTGCACTCATTGGTTATTGCTGGAATGAAGACGAAAAGATTTTAGTTTATGAATACATGCCTCAAGGGACTCTTAGAAGGCATTTGTTCGAATGGAAACAAGAAAATCTGAGTCCTCTTGACTGGCCTACAAGACTGAGTATAGCTTTCGATATCGCAAAAGGTGTTGATTATCTACATTCTGCAACCAACCAGATACTTGTCCACCGGGACTTGAAACCTACAAATATTTTACTTGGAGCTAATATGCGGGCTAAAGTTGCAGATTTTGGATTAGTGTATTCCTTGCCAGAAGGAAAAGACTACATTATGACTCCCATGGCAGGAACACAAGGCTATTGGCCTGAAGAATGTGTTGATGGAAAGATATCTGACACTTCAGATGTGTATACATTTGGAATACTTCTATTGGAACTCATTAGTGGAAGAAAAGTAAATGATTCTGTCTTCTTGCCAACATGGTTCCTAGATACCCTAAATACCAGGGATGAGAAGGGGAAAATCATCGAGTATGTTAACAAGTCTTATCTTGGCCAGGTTATTGATCCGGTAATAGATATATCGAATGAAACTCTGGTAGCTATTGCTAATGTTGCTGAATTGGCCTTGCACTTCATCCACCGTAAGTTTGATAGCAGGCCTTCCATTGCTCGTGTATTGGGTGTGCTTACTTTGCTCATTGATAGCTGGAAGCCACCACAGCCTGAAGAAGTCCAACCGAGATTGACAGTAAAAGAAGCATTTAGGAGGATTGATTCGGCTGCATCAACTAGCAAGCGGGTGTTCATAATCATCGTGTTGATTCGTCTGGTTGCCTTCTCCAGGTGCATGTGGTCATGTTGTTGTTTTATTAAATATGCAACATCAGAAGAAGCTGATAGGGCCATTAGAACTTTGCATAATCAACATACTCTTCCTGGGGGAGTAGGTCCTATCCAAGTCAGATATGCTGATGGGGAACAAGAACGCCTTGGTGCAGTTGAGTACGAACTGTTTGTGGTGACACTGAACAAACAACCTACGGAAAAGCAAGTTGAGGAATATTTTCCAGCATACTTTTATGAGATGAAAGAGTTTCTCATTAATAATCTGGTTGAAGATGTTTACCTCATGCGTGATGAATTGAAGCAGAGTTGTGGATGTGGATTTGTTAAGTATTCCCACCGAGATATGACGTTGGTTGTGACTCGTGAGCAACCACTAACTGTCTGTTTTGCTGATCCTAAAAAGCCTAGGCCTGGAGAATCAAGGATTCTCTATATTCTTCAGGCACTGGGGACCTGCTTTTGGAGGTCCAGGTTGTGGTCCTCGGTTTCAAAAGCCCAGGGGTCAGTTATTTACATACTTTTCTGTTCACTTCCTCCAAGCAGACCAGTGCTTAACTTTGGTGATCCTTTGAGTGATCAAATTCCAACTAATGCTTGGCATCCAATTAGTCCACCAAACTTGGTGCCATCCCCCAATCCTGATATTCGTGGTTTTGGGACCAATTTGCTTCCTAGGTCTGGAGACATGGGATGCTTTATTTCGAATCTTAACCAGTCGATGCCACATATGGATCAGCAAATATCCCCATTACAGAAGCATAATCAGTTATCTCAGCATTTGCCACCTTCCTTCATCAGCACCCTCAAACTCCAGCACCCTATGCACTCACACAAACAGCATGGCAGGTTGGTCAACCACAGCTTCCTCTTTCTGCTGGCCAAACACCATTTAATCAAGCTTTACCATCACAGAGAATACATGGCTTGGGAGGACAGCTGTCGGCCTCTCAGCCTGAGGTCCAGCAGAATGCATCTTCTGCTCCAGCACTACCAACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

1000

Amino Acids

112.84

Weight (kDa)

7.99

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	332 - 536	1.6e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	335 - 533	5.9e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	3 cut(s)	542, 2462, 2835
Acc65I	GGTACC	1 cut(s)	667
AccB1I	GGYRCC	2 cut(s)	667, 2623
AccB7I	CCANNNNNTGG	1 cut(s)	2475
AccI	GTMKAC	2 cut(s)	54, 1562
AciI	CCGC	3 cut(s)	216, 1423, 1951
AclWI	GGATC	8 cut(s)	68, 208, 645, 723, 1712, 2387, 2558, 2739
AcoI	YGGCCR	4 cut(s)	217, 733, 1705, 2877
AcsI	RAATTY	3 cut(s)	342, 674, 2580
AcuI	CTGAAG	6 cut(s)	464, 1017, 1536, 1539, 1899, 2423
AdeI	CACNNNGTG	1 cut(s)	751
AfaI	GTAC	3 cut(s)	592, 669, 2159
AfiI	CCNNNNNNNGG	8 cut(s)	510, 677, 1496, 1995, 2411, 2460, 2475, 2678
AflII	CTTAAG	1 cut(s)	827
AjnI	CCWGG	8 cut(s)	711, 1655, 1707, 1994, 2089, 2410, 2468, 2496
Alw21I	GWGCWC	2 cut(s)	756, 873
Alw26I	GTCTC	2 cut(s)	110, 2676
AlwI	GGATC	8 cut(s)	68, 208, 645, 723, 1712, 2387, 2558, 2739
AlwNI	CAGNNNCTG	1 cut(s)	2446
ApeKI	GCWGC	2 cut(s)	784, 1934
ApoI	RAATTY	3 cut(s)	342, 674, 2580
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AseI	ATTAAT	2 cut(s)	207, 2256
Asp700I	GAANNNNTTC	2 cut(s)	345, 2217
Asp718I	GGTACC	1 cut(s)	667
AspA2I	CCTAGG	2 cut(s)	2405, 2672
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	9 cut(s)	122, 305, 2055, 2102, 2451, 2466, 2478, 2658, 2958
AsuC2I	CCSGG	1 cut(s)	1382
AsuHPI	GGTGA	5 cut(s)	55, 523, 863, 2185, 2573
AsuII	TTCGAA	2 cut(s)	1263, 2702
AvaII	GGWCC	8 cut(s)	122, 305, 2102, 2451, 2466, 2478, 2658, 2958
AvrII	CCTAGG	2 cut(s)	2405, 2672
AxyI	CCTNAGG	1 cut(s)	2954
BalI	TGGCCA	3 cut(s)	735, 1707, 2879
BanI	GGYRCC	2 cut(s)	667, 2623
BanII	GRGCYC	2 cut(s)	355, 873
BauI	CACGAG	2 cut(s)	1824, 2361
BbsI	GAAGAC	3 cut(s)	278, 1209, 1612
Bbv12I	GWGCWC	2 cut(s)	756, 873
BbvI	GCAGC	2 cut(s)	771, 1921
BccI	CCATC	9 cut(s)	182, 698, 750, 853, 970, 1526, 2120, 2635, 2913
BciT130I	CCWGG	8 cut(s)	713, 1657, 1709, 1996, 2091, 2412, 2470, 2498
BclI	TGATCA	1 cut(s)	2575
BcnI	CCSGG	1 cut(s)	1382
BcoDI	GTCTC	2 cut(s)	110, 2676
BfaI	CTAG	8 cut(s)	278, 885, 897, 1107, 1640, 1944, 2406, 2673
BfmI	CTRYAG	2 cut(s)	51, 157
BfrI	CTTAAG	1 cut(s)	827
BfuAI	ACCTGC	3 cut(s)	542, 2462, 2835
BisI	GCNGC	3 cut(s)	217, 785, 1935
BlnI	CCTAGG	2 cut(s)	2405, 2672
BlsI	GCNGC	3 cut(s)	218, 786, 1936
Bme1390I	CCNGG	9 cut(s)	713, 1382, 1657, 1709, 1996, 2091, 2412, 2470, 2498
Bme18I	GGWCC	8 cut(s)	122, 305, 2102, 2451, 2466, 2478, 2658, 2958
BmgT120I	GGNCC	9 cut(s)	122, 305, 2055, 2102, 2451, 2466, 2478, 2658, 2958
BmiI	GGNNCC	6 cut(s)	307, 669, 1637, 2452, 2625, 2659
BmrFI	CCNGG	9 cut(s)	713, 1382, 1657, 1709, 1996, 2091, 2412, 2470, 2498
BmrI	ACTGGG	1 cut(s)	2456
BmsI	GCATC	6 cut(s)	546, 1946, 2608, 2681, 2709, 2980
BmuI	ACTGGG	1 cut(s)	2456
BoxI	GACNNNNGTC	1 cut(s)	2937
BpiI	GAAGAC	3 cut(s)	278, 1209, 1612
BpmI	CTGGAG	5 cut(s)	1978, 2433, 2700, 2795, 2966
Bpu14I	TTCGAA	2 cut(s)	1263, 2702
BpuEI	CTTGAG	2 cut(s)	983, 1221
BpuMI	CCSGG	1 cut(s)	1382
Bsa29I	ATCGAT	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	110
BsaWI	WCCGGW	2 cut(s)	848, 1720
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	8 cut(s)	510, 677, 1496, 1995, 2411, 2460, 2475, 2678
Bse1I	ACTGG	6 cut(s)	466, 736, 1301, 2451, 2546, 2713
Bse21I	CCTNAGG	1 cut(s)	2954
Bse3DI	GCAATG	2 cut(s)	24, 1818
BseBI	CCWGG	8 cut(s)	713, 1657, 1709, 1996, 2091, 2412, 2470, 2498
BseCI	ATCGAT	1 cut(s)	203
BseLI	CCNNNNNNNGG	8 cut(s)	510, 677, 1496, 1995, 2411, 2460, 2475, 2678
BseMI	GCAATG	2 cut(s)	24, 1818
BseMII	CTCAG	8 cut(s)	78, 427, 647, 1274, 1301, 2786, 2945, 2962
BseNI	ACTGG	6 cut(s)	466, 736, 1301, 2451, 2546, 2713
BseXI	GCAGC	2 cut(s)	771, 1921
BseYI	CCCAGC	2 cut(s)	313, 399
BsgI	GTGCAG	1 cut(s)	2169
Bsh1285I	CGRYCG	1 cut(s)	1094
BshNI	GGYRCC	2 cut(s)	667, 2623
BshVI	ATCGAT	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	1094
BsiHKAI	GWGCWC	2 cut(s)	756, 873
BsiSI	CCGG	3 cut(s)	849, 1381, 1721
BslFI	GGGAC	5 cut(s)	740, 1255, 1397, 2464, 2671
BslI	CCNNNNNNNGG	8 cut(s)	510, 677, 1496, 1995, 2411, 2460, 2475, 2678
BsmAI	GTCTC	2 cut(s)	110, 2676
BsmFI	GGGAC	5 cut(s)	740, 1255, 1397, 2464, 2671
BsmI	GAATGC	2 cut(s)	916, 2973
Bso31I	GGTCTC	1 cut(s)	110
Bsp119I	TTCGAA	2 cut(s)	1263, 2702
Bsp1286I	GDGCHC	3 cut(s)	355, 756, 873
Bsp19I	CCATGG	2 cut(s)	449, 1491
BspACI	CCGC	3 cut(s)	216, 1423, 1951
BspCNI	CTCAG	8 cut(s)	77, 426, 648, 1275, 1302, 2785, 2946, 2961
BspDI	ATCGAT	1 cut(s)	203
BspLI	GGNNCC	6 cut(s)	307, 669, 1637, 2452, 2625, 2659
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	3 cut(s)	542, 2462, 2835
BspPI	GGATC	8 cut(s)	68, 208, 645, 723, 1712, 2387, 2558, 2739
BspT104I	TTCGAA	2 cut(s)	1263, 2702
BspT107I	GGYRCC	2 cut(s)	667, 2623
BspTI	CTTAAG	1 cut(s)	827
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	24, 1818
BsrI	ACTGG	6 cut(s)	466, 736, 1301, 2451, 2546, 2713
BssNAI	GTATAC	1 cut(s)	1563
BssSI	CACGAG	2 cut(s)	1824, 2361
BssT1I	CCWWGG	6 cut(s)	449, 548, 1491, 2143, 2405, 2672
Bst1107I	GTATAC	1 cut(s)	1563
Bst2BI	CACGAG	2 cut(s)	1824, 2361
Bst2UI	CCWGG	8 cut(s)	713, 1657, 1709, 1996, 2091, 2412, 2470, 2498
Bst4CI	ACNGT	7 cut(s)	470, 954, 1092, 1796, 1903, 2166, 2380
Bst6I	CTCTTC	4 cut(s)	376, 378, 1067, 2091
BstAFI	CTTAAG	1 cut(s)	827
BstAPI	GCANNNNNTGC	2 cut(s)	2821, 2977
BstBI	TTCGAA	2 cut(s)	1263, 2702
BstC8I	GCNNGC	6 cut(s)	243, 890, 1425, 1811, 1949, 2877
BstDSI	CCRYGG	2 cut(s)	449, 1491
BstENI	CCTNNNNNAGG	1 cut(s)	1993
BstHHI	GCGC	1 cut(s)	946
BstMAI	GTCTC	2 cut(s)	110, 2676
BstMCI	CGRYCG	1 cut(s)	1094
BstNI	CCWGG	8 cut(s)	713, 1657, 1709, 1996, 2091, 2412, 2470, 2498
BstNSI	RCATGY	2 cut(s)	1234, 2005
BstPAI	GACNNNNGTC	1 cut(s)	2937
BstSCI	CCNGG	9 cut(s)	711, 1380, 1655, 1707, 1994, 2089, 2410, 2468, 2496
BstSFI	CTRYAG	2 cut(s)	51, 157
BstV1I	GCAGC	2 cut(s)	771, 1921
BstV2I	GAAGAC	3 cut(s)	278, 1209, 1612
BstX2I	RGATCY	3 cut(s)	60, 637, 715
BstXI	CCANNNNNNTGG	2 cut(s)	587, 1009
BstYI	RGATCY	3 cut(s)	60, 637, 715
BstZ17I	GTATAC	1 cut(s)	1563
Bsu15I	ATCGAT	1 cut(s)	203
Bsu36I	CCTNAGG	1 cut(s)	2954
BsuTUI	ATCGAT	1 cut(s)	203
BtgI	CCRYGG	2 cut(s)	449, 1491
BtsI	GCAGTG	3 cut(s)	236, 873, 1074
BtsIMutI	CAGTG	9 cut(s)	236, 421, 466, 729, 873, 1074, 2177, 2444, 2553
BveI	ACCTGC	3 cut(s)	542, 2462, 2835
Cac8I	GCNNGC	6 cut(s)	243, 890, 1425, 1811, 1949, 2877
CaiI	CAGNNNCTG	1 cut(s)	2446
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	9 cut(s)	122, 305, 2055, 2102, 2451, 2466, 2478, 2658, 2958
ClaI	ATCGAT	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	591, 668, 2158
CspCI	CAANNNNNGTGG	4 cut(s)	640, 675, 2601, 2636
CviQI	GTAC	3 cut(s)	591, 668, 2158
DraI	TTTAAA	1 cut(s)	1039
DraIII	CACNNNGTG	1 cut(s)	751
EaeI	YGGCCR	4 cut(s)	217, 733, 1705, 2877
Eam1104I	CTCTTC	4 cut(s)	376, 378, 1067, 2091
EarI	CTCTTC	4 cut(s)	376, 378, 1067, 2091
Ecl136II	GAGCTC	1 cut(s)	871
Eco130I	CCWWGG	6 cut(s)	449, 548, 1491, 2143, 2405, 2672
Eco147I	AGGCCT	2 cut(s)	1813, 2410
Eco24I	GRGCYC	2 cut(s)	355, 873
Eco31I	GGTCTC	1 cut(s)	110
Eco32I	GATATC	3 cut(s)	427, 1327, 1542
Eco47I	GGWCC	8 cut(s)	122, 305, 2102, 2451, 2466, 2478, 2658, 2958
Eco53kI	GAGCTC	1 cut(s)	871
Eco57I	CTGAAG	6 cut(s)	464, 1017, 1536, 1539, 1899, 2423
Eco81I	CCTNAGG	1 cut(s)	2954
EcoICRI	GAGCTC	1 cut(s)	871
EcoNI	CCTNNNNNAGG	1 cut(s)	1993
EcoO109I	RGGNCCY	2 cut(s)	2102, 2451
EcoRII	CCWGG	8 cut(s)	711, 1655, 1707, 1994, 2089, 2410, 2468, 2496
EcoRV	GATATC	3 cut(s)	427, 1327, 1542
EcoT14I	CCWWGG	6 cut(s)	449, 548, 1491, 2143, 2405, 2672
EcoT22I	ATGCAT	1 cut(s)	2973
EcoT38I	GRGCYC	2 cut(s)	355, 873
ErhI	CCWWGG	6 cut(s)	449, 548, 1491, 2143, 2405, 2672
FalI	AAGNNNNNCTT	6 cut(s)	990, 1022, 1230, 1262, 2127, 2159
FaqI	GGGAC	5 cut(s)	740, 1255, 1397, 2464, 2671
FauI	CCCGC	2 cut(s)	1416, 1944
FauNDI	CATATG	2 cut(s)	70, 2727
FbaI	TGATCA	1 cut(s)	2575
FblI	GTMKAC	2 cut(s)	54, 1562
Fnu4HI	GCNGC	3 cut(s)	217, 785, 1935
FriOI	GRGCYC	2 cut(s)	355, 873
Fsp4HI	GCNGC	3 cut(s)	217, 785, 1935
FspBI	CTAG	8 cut(s)	278, 885, 897, 1107, 1640, 1944, 2406, 2673
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	3 cut(s)	217, 785, 1935
GsaI	CCCAGC	2 cut(s)	317, 403
GsuI	CTGGAG	5 cut(s)	1978, 2433, 2700, 2795, 2966
HapII	CCGG	3 cut(s)	849, 1381, 1721
HhaI	GCGC	1 cut(s)	946
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HincII	GTYRAC	2 cut(s)	1690, 2854
HindII	GTYRAC	2 cut(s)	1690, 2854
HindIII	AAGCTT	2 cut(s)	256, 2897
HpaI	GTTAAC	1 cut(s)	1690
HpaII	CCGG	3 cut(s)	849, 1381, 1721
HphI	GGTGA	5 cut(s)	55, 523, 863, 2185, 2573
Hpy166II	GTNNAC	9 cut(s)	55, 305, 1378, 1563, 1690, 2278, 2528, 2612, 2854
Hpy188I	TCNGA	8 cut(s)	151, 297, 1135, 1284, 1546, 1555, 2041, 2117
Hpy188III	TCNNGA	8 cut(s)	83, 380, 802, 1095, 1292, 2363, 2639, 2679
Hpy8I	GTNNAC	9 cut(s)	55, 305, 1378, 1563, 1690, 2278, 2528, 2612, 2854
HpyAV	CCTTC	9 cut(s)	7, 319, 1245, 1460, 1660, 1824, 1999, 2796, 2800
HpyCH4III	ACNGT	7 cut(s)	470, 954, 1092, 1796, 1903, 2166, 2380
HpyCH4IV	ACGT	1 cut(s)	2348
HpySE526I	ACGT	1 cut(s)	2348
HspAI	GCGC	1 cut(s)	944
KpnI	GGTACC	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	2575
KspAI	GTTAAC	1 cut(s)	1690
LmnI	GCTCC	6 cut(s)	85, 475, 515, 759, 1412, 2985
Lsp1109I	GCAGC	2 cut(s)	771, 1921
LweI	GCATC	6 cut(s)	546, 1946, 2608, 2681, 2709, 2980
MaeI	CTAG	8 cut(s)	278, 885, 897, 1107, 1640, 1944, 2406, 2673
MaeII	ACGT	1 cut(s)	2348
MaeIII	GTNAC	5 cut(s)	21, 416, 464, 2173, 2356
MflI	RGATCY	3 cut(s)	60, 637, 715
MhlI	GDGCHC	3 cut(s)	355, 756, 873
MlsI	TGGCCA	3 cut(s)	735, 1707, 2879
MluNI	TGGCCA	3 cut(s)	735, 1707, 2879
MlyI	GAGTC	4 cut(s)	1237, 1294, 1480, 2353
MmeI	TCCRAC	5 cut(s)	615, 1113, 1183, 1912, 2609
Mox20I	TGGCCA	3 cut(s)	735, 1707, 2879
Mph1103I	ATGCAT	1 cut(s)	2973
MroXI	GAANNNNTTC	2 cut(s)	345, 2217
MscI	TGGCCA	3 cut(s)	735, 1707, 2879
MslI	CAYNNNNRTG	1 cut(s)	911
Msp20I	TGGCCA	3 cut(s)	735, 1707, 2879
MspA1I	CMGCKG	2 cut(s)	583, 2937
MspCI	CTTAAG	1 cut(s)	827
MspI	CCGG	3 cut(s)	849, 1381, 1721
MspR9I	CCNGG	9 cut(s)	713, 1382, 1657, 1709, 1996, 2091, 2412, 2470, 2498
Mva1269I	GAATGC	2 cut(s)	916, 2973
MvaI	CCWGG	8 cut(s)	713, 1657, 1709, 1996, 2091, 2412, 2470, 2498
NciI	CCSGG	1 cut(s)	1382
NcoI	CCATGG	2 cut(s)	449, 1491
NdeI	CATATG	2 cut(s)	70, 2727
NlaIV	GGNNCC	6 cut(s)	307, 669, 1637, 2452, 2625, 2659
NmuCI	GTSAC	5 cut(s)	21, 416, 464, 2173, 2356
NsiI	ATGCAT	1 cut(s)	2973
NspI	RCATGY	2 cut(s)	1234, 2005
NspV	TTCGAA	2 cut(s)	1263, 2702
PaqCI	CACCTGC	1 cut(s)	542
PasI	CCCWGGG	1 cut(s)	2497
PceI	AGGCCT	2 cut(s)	1813, 2410
PctI	GAATGC	2 cut(s)	916, 2973
PdmI	GAANNNNTTC	2 cut(s)	345, 2217
PfeI	GAWTC	7 cut(s)	688, 1613, 1928, 1975, 2417, 2425, 2704
PflMI	CCANNNNNTGG	1 cut(s)	2475
PkrI	GCNGC	3 cut(s)	218, 786, 1936
PleI	GAGTC	4 cut(s)	1237, 1293, 1480, 2353
PpsI	GAGTC	4 cut(s)	1237, 1293, 1480, 2353
PpuMI	RGGWCCY	2 cut(s)	2102, 2451
PshAI	GACNNNNGTC	1 cut(s)	2937
PshBI	ATTAAT	2 cut(s)	207, 2256
PsiI	TTATAA	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	873
Psp5II	RGGWCCY	2 cut(s)	2102, 2451
Psp6I	CCWGG	8 cut(s)	711, 1655, 1707, 1994, 2089, 2410, 2468, 2496
PspFI	CCCAGC	2 cut(s)	313, 399
PspGI	CCWGG	8 cut(s)	711, 1655, 1707, 1994, 2089, 2410, 2468, 2496
PspN4I	GGNNCC	6 cut(s)	307, 669, 1637, 2452, 2625, 2659
PspPI	GGNCC	9 cut(s)	122, 305, 2055, 2102, 2451, 2466, 2478, 2658, 2958
PspPPI	RGGWCCY	2 cut(s)	2102, 2451
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	2446
PsuI	RGATCY	3 cut(s)	60, 637, 715
PvuII	CAGCTG	2 cut(s)	583, 2937
RsaI	GTAC	3 cut(s)	592, 669, 2159
RsaNI	GTAC	3 cut(s)	591, 668, 2158
RseI	CAYNNNNRTG	1 cut(s)	911
SacI	GAGCTC	1 cut(s)	873
SatI	GCNGC	3 cut(s)	217, 785, 1935
Sau96I	GGNCC	9 cut(s)	122, 305, 2055, 2102, 2451, 2466, 2478, 2658, 2958
SchI	GAGTC	4 cut(s)	1237, 1294, 1480, 2353
ScrFI	CCNGG	9 cut(s)	713, 1382, 1657, 1709, 1996, 2091, 2412, 2470, 2498
SduI	GDGCHC	3 cut(s)	355, 756, 873
SfaNI	GCATC	6 cut(s)	546, 1946, 2608, 2681, 2709, 2980
SfcI	CTRYAG	2 cut(s)	51, 157
SfuI	TTCGAA	2 cut(s)	1263, 2702
SinI	GGWCC	8 cut(s)	122, 305, 2102, 2451, 2466, 2478, 2658, 2958
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	3 cut(s)	827, 962, 1236
SmoI	CTYRAG	3 cut(s)	827, 962, 1236
SseBI	AGGCCT	2 cut(s)	1813, 2410
SsiI	CCGC	3 cut(s)	216, 1423, 1951
SspI	AATATT	6 cut(s)	266, 457, 508, 819, 1402, 2216
SspMI	CTAG	8 cut(s)	278, 885, 897, 1107, 1640, 1944, 2406, 2673
SstI	GAGCTC	1 cut(s)	873
StuI	AGGCCT	2 cut(s)	1813, 2410
StyD4I	CCNGG	9 cut(s)	711, 1380, 1655, 1707, 1994, 2089, 2410, 2468, 2496
StyI	CCWWGG	6 cut(s)	449, 548, 1491, 2143, 2405, 2672
TaaI	ACNGT	7 cut(s)	470, 954, 1092, 1796, 1903, 2166, 2380
TaiI	ACGT	1 cut(s)	2351
TaqI	TCGA	8 cut(s)	203, 349, 1263, 1323, 1680, 1736, 2702, 2717
TaqII	GACCGA	1 cut(s)	110
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	7 cut(s)	688, 1613, 1928, 1975, 2417, 2425, 2704
TscAI	CASTG	9 cut(s)	243, 421, 473, 736, 880, 1074, 2184, 2451, 2553
TseFI	GTSAC	5 cut(s)	21, 416, 464, 2173, 2356
TseI	GCWGC	2 cut(s)	784, 1934
Tsp45I	GTSAC	5 cut(s)	21, 416, 464, 2173, 2356
TspGWI	ACGGA	1 cut(s)	2210
TspRI	CASTG	9 cut(s)	243, 421, 473, 736, 880, 1074, 2184, 2451, 2553
Van91I	CCANNNNNTGG	1 cut(s)	2475
Vha464I	CTTAAG	1 cut(s)	827
VpaK11BI	GGWCC	8 cut(s)	122, 305, 2102, 2451, 2466, 2478, 2658, 2958
VspI	ATTAAT	2 cut(s)	207, 2256
XagI	CCTNNNNNAGG	1 cut(s)	1993
XapI	RAATTY	3 cut(s)	342, 674, 2580
XceI	RCATGY	2 cut(s)	1234, 2005
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2592
XmaJI	CCTAGG	2 cut(s)	2405, 2672
XmiI	GTMKAC	2 cut(s)	54, 1562
XmnI	GAANNNNTTC	2 cut(s)	345, 2217
XspI	CTAG	8 cut(s)	278, 885, 897, 1107, 1640, 1944, 2406, 2673
Zsp2I	ATGCAT	1 cut(s)	2973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.