Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8225702.1

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

48 .. 720

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8225702.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ctgtttgtttctgcagcaaaagttcaagagttccatgtgtatgagatcaacgaacgagaccgttcaagcccggcttaccttagtttgagccagaaacctgcccattcgcttggagatctcgtgcccttcactaacaaaatatacaccggcgaccttcagaaacgattggggataacggcgggactttgcattttgatcgaaagcaagcctgaaaagaagggtgaccgatatgaggcaatgtacagcttctattttggggactatggtcacatttccgtccaaggaccgtacttgacttacgaggacacgagcttggccgtgaccggtggttcggggatattcgaaggagtgtatggacatgtcaagctgcaccagattgtgttccccttcaaaatcttgtacactttttacttgaaggggattgaggacttgcctgaggagcttacggctgtgaagcttgtggaaccaagccccagtgttcagcccagccctgctgccaaggcttgtgaaccccaagctactgtctctaatttcactaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

180

Amino Acids

19.95

Weight (kDa)

5.73

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	242, 290, 401
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	26, 66, 391, 415
AluBI	AGCT	6 cut(s)	246, 312, 367, 442, 457, 518
AluI	AGCT	6 cut(s)	246, 312, 367, 442, 457, 518
Alw26I	GTCTC	2 cut(s)	51, 529
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	3 cut(s)	14, 367, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AsiGI	ACCGGT	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	284
AxyI	CCTNAGG	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	126
BauI	CACGAG	2 cut(s)	119, 307
BbvI	GCAGC	3 cut(s)	26, 354, 481
BceAI	ACGGC	3 cut(s)	192, 302, 462
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	51, 529
BfaI	CTAG	1 cut(s)	541
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	3 cut(s)	15, 368, 495
BlsI	GCNGC	3 cut(s)	16, 369, 496
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	468
BmuI	ACTGGG	1 cut(s)	468
BoxI	GACNNNNGTC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	280, 498
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	146, 323
Bse1I	ACTGG	1 cut(s)	474
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	280, 498
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	1 cut(s)	452
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	3 cut(s)	26, 354, 481
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	317
BshTI	ACCGGT	1 cut(s)	323
BsiSI	CCGG	3 cut(s)	71, 147, 324
BslFI	GGGAC	2 cut(s)	195, 272
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	2 cut(s)	51, 529
BsmFI	GGGAC	2 cut(s)	195, 272
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp1407I	TGTACA	2 cut(s)	240, 399
Bsp143I	GATC	3 cut(s)	45, 115, 195
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	106
BspT104I	TTCGAA	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	146, 323
BsrGI	TGTACA	2 cut(s)	240, 399
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	2 cut(s)	146, 323
BssECI	CCNNGG	2 cut(s)	280, 498
BssMI	GATC	3 cut(s)	45, 115, 195
BssSI	CACGAG	2 cut(s)	119, 307
BssT1I	CCWWGG	2 cut(s)	280, 498
Bst2BI	CACGAG	2 cut(s)	119, 307
Bst4CI	ACNGT	3 cut(s)	62, 288, 523
BstAUI	TGTACA	2 cut(s)	240, 399
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	206
BstDEI	CTNAG	2 cut(s)	80, 435
BstEII	GGTNACC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	48, 118, 198
BstMAI	GTCTC	2 cut(s)	51, 529
BstMBI	GATC	3 cut(s)	45, 115, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 500
BstNSI	RCATGY	1 cut(s)	362
BstPAI	GACNNNNGTC	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	26, 354, 481
BstX2I	RGATCY	1 cut(s)	115
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	206
Cfr10I	RCCGGY	2 cut(s)	146, 323
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	241, 289, 400
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	2 cut(s)	35, 359
CviQI	GTAC	3 cut(s)	241, 289, 400
DdeI	CTNAG	2 cut(s)	80, 435
DpnI	GATC	3 cut(s)	47, 117, 197
DpnII	GATC	3 cut(s)	45, 115, 195
EaeI	YGGCCR	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	280, 498
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	435
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	280, 498
ErhI	CCWWGG	2 cut(s)	280, 498
FaeI	CATG	2 cut(s)	38, 362
FaiI	YATR	7 cut(s)	36, 42, 142, 231, 264, 354, 360
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FaqI	GGGAC	2 cut(s)	195, 272
FatI	CATG	2 cut(s)	34, 358
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	15, 368, 495
Fsp4HI	GCNGC	3 cut(s)	15, 368, 495
FspBI	CTAG	1 cut(s)	541
GluI	GCNGC	3 cut(s)	15, 368, 495
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	3 cut(s)	71, 147, 324
Hin1II	CATG	2 cut(s)	38, 362
HindIII	AAGCTT	1 cut(s)	455
HpaII	CCGG	3 cut(s)	71, 147, 324
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	402, 509
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	2 cut(s)	402, 509
HpyAV	CCTTC	6 cut(s)	136, 164, 211, 338, 397, 409
HpyCH4III	ACNGT	3 cut(s)	62, 288, 523
HpyCH4V	TGCA	3 cut(s)	14, 189, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 500
HpyF3I	CTNAG	2 cut(s)	80, 435
Hsp92II	CATG	2 cut(s)	38, 362
Kzo9I	GATC	3 cut(s)	45, 115, 195
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	3 cut(s)	26, 354, 481
MaeI	CTAG	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	221, 266, 319
MalI	GATC	3 cut(s)	47, 117, 197
MboI	GATC	3 cut(s)	45, 115, 195
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	529
MnlI	CCTC	4 cut(s)	226, 295, 418, 430
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	3 cut(s)	71, 147, 324
MspR9I	CCNGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	439, 500
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	3 cut(s)	45, 115, 195
NlaIII	CATG	2 cut(s)	38, 362
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	3 cut(s)	221, 266, 319
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	342
PciI	ACATGT	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	3 cut(s)	16, 369, 496
PscI	ACATGT	1 cut(s)	358
PshAI	GACNNNNGTC	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	3 cut(s)	242, 290, 401
RsaNI	GTAC	3 cut(s)	241, 289, 400
RseI	CAYNNNNRTG	1 cut(s)	39
SatI	GCNGC	3 cut(s)	15, 368, 495
Sau3AI	GATC	3 cut(s)	45, 115, 195
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	9 cut(s)	81, 100, 156, 248, 314, 369, 444, 459, 520
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	342
SgrAI	CRCCGGYG	1 cut(s)	146
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	1 cut(s)	529
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	280, 498
TaaI	ACNGT	3 cut(s)	62, 288, 523
TaqI	TCGA	2 cut(s)	198, 342
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	529
TatI	WGTACW	2 cut(s)	240, 399
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	3 cut(s)	221, 266, 319
TseI	GCWGC	3 cut(s)	14, 367, 494
Tsp45I	GTSAC	3 cut(s)	221, 266, 319
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.