Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452415.1

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

266 .. 1586

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452415.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgaatgagagggatcgtggaagccctgctgttctgaaattgagtcaaaaaactgtcaactccctcggcgatctcgtccccttcagtaacaagttgtacactggggacctgcaaaaacgacttggaataactgctggaatatgcattctgattgaaaacaaaccagaaaagaaaggtgatcgctatgaggccatctacagcttctacttcggagactatggtcacattgcggtacagggaccctatttaacctacgaggacacgtatcttgccgtgactggggggtctggaatcttcgagggtgcttacggtcaggtgaagctgcagcagcttattttccccatcaagcttttctatacattttaccttaagggcattaagggggaccttcccaatgagcttcttggaaaaccagtggagcccaacccaggtgttgagcctagcgcagctgccaaggcctgtgagcctgatgccaccattgccaatttcactaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

165

Amino Acids

18.08

Weight (kDa)

5.86

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	117
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	98, 234
AfiI	CCNNNNNNNGG	2 cut(s)	279, 428
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	6 cut(s)	201, 322, 331, 349, 400, 449
AluI	AGCT	6 cut(s)	201, 322, 331, 349, 400, 449
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	189, 456
ApeKI	GCWGC	5 cut(s)	322, 325, 328, 446, 449
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	106, 239, 385
AsuHPI	GGTGA	2 cut(s)	188, 328
AvaII	GGWCC	3 cut(s)	106, 239, 385
BanII	GRGCYC	1 cut(s)	423
BbvI	GCAGC	5 cut(s)	309, 337, 340, 436, 458
BccI	CCATC	2 cut(s)	200, 350
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	2 cut(s)	196, 323
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	117
BisI	GCNGC	5 cut(s)	323, 326, 329, 447, 450
BlsI	GCNGC	5 cut(s)	324, 327, 330, 448, 451
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	3 cut(s)	106, 239, 385
BmgT120I	GGNCC	3 cut(s)	106, 239, 385
BmiI	GGNNCC	5 cut(s)	107, 240, 241, 386, 420
BmrFI	CCNGG	1 cut(s)	429
BmrI	ACTGGG	2 cut(s)	111, 288
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	2 cut(s)	111, 288
BoxI	GACNNNNGTC	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	64, 427, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 428
Bse1I	ACTGG	3 cut(s)	106, 283, 413
Bse3DI	GCAATG	2 cut(s)	225, 477
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	3 cut(s)	64, 427, 453
BseLI	CCNNNNNNNGG	2 cut(s)	279, 428
BseMI	GCAATG	2 cut(s)	225, 477
BseNI	ACTGG	3 cut(s)	106, 283, 413
BseXI	GCAGC	5 cut(s)	309, 337, 340, 436, 458
BshFI	GGCC	2 cut(s)	191, 458
BslFI	GGGAC	4 cut(s)	62, 119, 252, 398
BslI	CCNNNNNNNGG	2 cut(s)	279, 428
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	4 cut(s)	62, 119, 252, 398
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	191, 458
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	13, 70, 178
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	191, 458
BspLI	GGNNCC	5 cut(s)	107, 240, 241, 386, 420
BspMAI	CTGCAG	1 cut(s)	327
BspMI	ACCTGC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	2 cut(s)	225, 477
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	3 cut(s)	106, 283, 413
BssECI	CCNNGG	3 cut(s)	64, 427, 453
BssMI	GATC	3 cut(s)	13, 70, 178
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	55, 311
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	3 cut(s)	16, 73, 181
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	13, 70, 178
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 455, 479
BstNI	CCWGG	1 cut(s)	429
BstPAI	GACNNNNGTC	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	2 cut(s)	196, 323
BstV1I	GCAGC	5 cut(s)	309, 337, 340, 436, 458
BsuRI	GGCC	2 cut(s)	191, 458
BtsIMutI	CAGTG	2 cut(s)	99, 420
BveI	ACCTGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	3 cut(s)	106, 239, 385
Csp6I	GTAC	2 cut(s)	97, 233
CviQI	GTAC	2 cut(s)	97, 233
DpnI	GATC	3 cut(s)	15, 72, 180
DpnII	GATC	3 cut(s)	13, 70, 178
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	106, 239, 385
Eco57I	CTGAAG	1 cut(s)	67
EcoO109I	RGGNCCY	3 cut(s)	106, 239, 385
EcoRII	CCWGG	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	453
FaiI	YATR	4 cut(s)	142, 186, 219, 357
FaqI	GGGAC	4 cut(s)	62, 119, 252, 398
Fnu4HI	GCNGC	5 cut(s)	323, 326, 329, 447, 450
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	5 cut(s)	323, 326, 329, 447, 450
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	5 cut(s)	323, 326, 329, 447, 450
HaeIII	GGCC	2 cut(s)	191, 458
HhaI	GCGC	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	2 cut(s)	43, 291
HphI	GGTGA	2 cut(s)	188, 328
Hpy166II	GTNNAC	2 cut(s)	58, 99
Hpy188I	TCNGA	3 cut(s)	36, 150, 212
Hpy188III	TCNNGA	1 cut(s)	288
Hpy8I	GTNNAC	2 cut(s)	58, 99
HpyAV	CCTTC	2 cut(s)	91, 398
HpyCH4III	ACNGT	2 cut(s)	55, 311
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	112, 144, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 455, 479
HpySE526I	ACGT	1 cut(s)	263
HspAI	GCGC	1 cut(s)	444
KflI	GGGWCCC	1 cut(s)	239
Kzo9I	GATC	3 cut(s)	13, 70, 178
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	5 cut(s)	309, 337, 340, 436, 458
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	86, 221, 274
MalI	GATC	3 cut(s)	15, 72, 180
MboI	GATC	3 cut(s)	13, 70, 178
MboII	GAAGA	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	38, 484
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	3, 74, 181, 250, 292
Mph1103I	ATGCAT	1 cut(s)	146
MseI	TTAA	3 cut(s)	248, 369, 378
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	328, 455, 479
NdeII	GATC	3 cut(s)	13, 70, 178
NlaIV	GGNNCC	5 cut(s)	107, 240, 241, 386, 420
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	2 cut(s)	221, 274
NsiI	ATGCAT	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	5 cut(s)	324, 327, 330, 448, 451
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	264
PpuMI	RGGWCCY	3 cut(s)	106, 239, 385
PshAI	GACNNNNGTC	1 cut(s)	219
Psp5II	RGGWCCY	3 cut(s)	106, 239, 385
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	5 cut(s)	107, 240, 241, 386, 420
PspPI	GGNCC	3 cut(s)	106, 239, 385
PspPPI	RGGWCCY	3 cut(s)	106, 239, 385
PstI	CTGCAG	1 cut(s)	327
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	98, 234
RsaNI	GTAC	2 cut(s)	97, 233
SaqAI	TTAA	3 cut(s)	248, 369, 378
SatI	GCNGC	5 cut(s)	323, 326, 329, 447, 450
Sau3AI	GATC	3 cut(s)	13, 70, 178
Sau96I	GGNCC	3 cut(s)	106, 239, 385
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	429
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	2 cut(s)	196, 323
SinI	GGWCC	3 cut(s)	106, 239, 385
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	38, 484
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	55, 311
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	38, 484
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	3 cut(s)	248, 369, 378
Tru9I	TTAA	3 cut(s)	248, 369, 378
TscAI	CASTG	2 cut(s)	106, 420
TseFI	GTSAC	2 cut(s)	221, 274
TseI	GCWGC	5 cut(s)	322, 325, 328, 446, 449
Tsp45I	GTSAC	2 cut(s)	221, 274
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	106, 420
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	3 cut(s)	106, 239, 385
XspI	CTAG	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.