Prupe.3G239900_v2.0.a1

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002259
Physical Location & Seq
Reverse (-)
23392284 .. 23393619
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G239900.1

Sequence Viewer

Length: 555 bp
ATGGCCTGCTCAAGCGCTTCAAGACCCACCAAAGTTCAAGAACTCCATGTCTATGAGATCAATGAGAGAGACCGCGCAAGCCCTGCATATCTCAGTTTAAGCCAGAAACCTGTTAATTCTCTTGGAGACCTCGTCCCCTTCACTAACAAAATATATACTGGGGATCTTCAGAAACGCTTGGGAGTGACAGCAGGCATCTGCATTTTGATCGAGAACAAGCCGGAGAAGAAAGGTGATCGATATGAGGCTATTTACAGCTTCTATTTTGGAGACTATGGTCACATTTCAGTTCAAGGACCTTATTTGACCTACGAGGACACGTATCTGGCTGTGACTGGTGGCTCTGGGATCTTTGAAGGAGTGTACGGGCAGGTGAAGCTGCACCAGATTGTGTTCCCTTTCAAGATCCTCTACACTTTTTACCTCAAGGGGATTGAGGATTTGCCTGAGGAGCTTACTGCTGTGAAGCTTGTGGAACCAAGCCCTGCTGTTGAGCCCAGCCCTGCTGCCAAGGCTTGTGAGCCTCAAGCCACAATCTCCAACTTCACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

5.42

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
Acc36I ACCTGC 1 cut(s) 361
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 73
AclWI GGATC 3 cut(s) 171, 356, 400
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 1 cut(s) 365
AfeI AGCGCT 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 5 cut(s) 21, 38, 293, 356, 403
AluBI AGCT 4 cut(s) 258, 379, 454, 469
AluI AGCT 4 cut(s) 258, 379, 454, 469
Alw26I GTCTC 3 cut(s) 63, 120, 264
AlwI GGATC 3 cut(s) 171, 356, 400
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 379, 506
AspLEI GCGC 2 cut(s) 17, 77
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 3 cut(s) 245, 385, 538
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 447
BanII GRGCYC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 366, 493
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcoDI GTCTC 3 cut(s) 63, 120, 264
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 361
BisI GCNGC 2 cut(s) 380, 507
BlsI GCNGC 2 cut(s) 381, 508
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 204
BmuI ACTGGG 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 410, 510
Bsa29I ATCGAT 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 321
BsaI GGTCTC 2 cut(s) 63, 120
BsaJI CCNNGG 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse1I ACTGG 2 cut(s) 163, 340
Bse21I CCTNAGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 106, 438
BseNI ACTGG 2 cut(s) 163, 340
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 2 cut(s) 366, 493
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 238
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 3 cut(s) 63, 120, 264
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 63, 120
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 6 cut(s) 57, 163, 207, 235, 348, 405
BspACI CCGC 1 cut(s) 73
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 105, 439
BspDI ATCGAT 1 cut(s) 238
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 3 cut(s) 171, 356, 400
BspTNI GGTCTC 2 cut(s) 63, 120
BsrI ACTGG 2 cut(s) 163, 340
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 6 cut(s) 57, 163, 207, 235, 348, 405
BssT1I CCWWGG 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 3 cut(s) 7, 79, 193
BstDEI CTNAG 2 cut(s) 92, 447
BstFNI CGCG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 2 cut(s) 17, 77
BstKTI GATC 6 cut(s) 60, 166, 210, 238, 351, 408
BstMAI GTCTC 3 cut(s) 63, 120, 264
BstMBI GATC 6 cut(s) 57, 163, 207, 235, 348, 405
BstMWI GCNNNNNNNGC 4 cut(s) 83, 376, 451, 512
BstPAI GACNNNNGTC 1 cut(s) 276
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 366, 493
BstX2I RGATCY 3 cut(s) 163, 348, 405
BstYI RGATCY 3 cut(s) 163, 348, 405
Bsu15I ATCGAT 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 238
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 7, 79, 193
CfoI GCGC 2 cut(s) 17, 77
Cfr13I GGNCC 1 cut(s) 296
ClaI ATCGAT 1 cut(s) 238
Csp6I GTAC 1 cut(s) 364
CviAII CATG 1 cut(s) 47
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 92, 447
DpnI GATC 6 cut(s) 59, 165, 209, 237, 350, 407
DpnII GATC 6 cut(s) 57, 163, 207, 235, 348, 405
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 2 cut(s) 63, 120
Eco47I GGWCC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 1 cut(s) 50
FaiI YATR 7 cut(s) 48, 54, 88, 154, 156, 243, 276
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 380, 507
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 380, 507
GlaI GCGC 2 cut(s) 16, 76
GluI GCNGC 2 cut(s) 380, 507
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 221
HhaI GCGC 2 cut(s) 17, 77
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 2 cut(s) 15, 75
HinP1I GCGC 2 cut(s) 15, 75
HindIII AAGCTT 1 cut(s) 467
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 245, 385, 538
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 4 cut(s) 21, 38, 211, 403
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 148, 350
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 86, 201, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 376, 451, 512
HpyF3I CTNAG 2 cut(s) 92, 447
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 2 cut(s) 15, 75
Kzo9I GATC 6 cut(s) 57, 163, 207, 235, 348, 405
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 2 cut(s) 366, 493
LweI GCATC 1 cut(s) 204
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 3 cut(s) 184, 278, 331
MalI GATC 6 cut(s) 59, 165, 209, 237, 350, 407
MboI GATC 6 cut(s) 57, 163, 207, 235, 348, 405
MboII GAAGA 2 cut(s) 158, 238
MflI RGATCY 3 cut(s) 163, 348, 405
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 1 cut(s) 115
MnlI CCTC 8 cut(s) 140, 238, 307, 419, 430, 434, 442, 534
MseI TTAA 2 cut(s) 98, 114
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 4 cut(s) 83, 376, 451, 512
NdeII GATC 6 cut(s) 57, 163, 207, 235, 348, 405
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 3 cut(s) 184, 278, 331
PaqCI CACCTGC 1 cut(s) 361
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 381, 508
Ppu21I YACGTR 1 cut(s) 321
PpuMI RGGWCCY 1 cut(s) 296
PshAI GACNNNNGTC 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 296
PspPPI RGGWCCY 1 cut(s) 296
PsuI RGATCY 3 cut(s) 163, 348, 405
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 2 cut(s) 98, 114
SatI GCNGC 2 cut(s) 380, 507
Sau3AI GATC 6 cut(s) 57, 163, 207, 235, 348, 405
Sau96I GGNCC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 498
SfaNI GCATC 1 cut(s) 204
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 10, 425, 525
SmoI CTYRAG 3 cut(s) 10, 425, 525
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 73
StyI CCWWGG 1 cut(s) 510
TaiI ACGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 210, 238
TasI AATT 1 cut(s) 115
Tru1I TTAA 2 cut(s) 98, 114
Tru9I TTAA 2 cut(s) 98, 114
TseFI GTSAC 3 cut(s) 184, 278, 331
TseI GCWGC 2 cut(s) 379, 506
Tsp45I GTSAC 3 cut(s) 184, 278, 331
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.