RLG00000021133

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002259
Physical Location & Seq
Forward (+)
72190310 .. 72191125
816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021133

Sequence Viewer

Length: 492 bp
ATGAGGGGGCTAGAAGGATTGTTCTCTCTAGATGGGCACGTTTGCGGAGAGGAGCGCCTAGCAACGACTCTCTTCGATCTTTTAACCGCTACAAAAGTTCAAGAGTTCCATGTGTATGAGATCAACGAACGAGACCGTTCGAGCCCGGCTTACCTTAGTTTGAGCCAGAAACCTGCCCATTCGCTTGGAGATCTCGTGCCCTTCACTAACAAAATATACACCGGAGACCTTCAGAAACTATTAGGGATAATGGCGGGACTTTGCATTTTGATCGAAAGCAAGCCTGAAAAGAAGGGAGTGTATGGACATGTCAAGCTGCACCAGATTGTGTTCCCCTTCAAAATCTTGTACACTTTTTACTTGAAGGGGATTGAGGACTTGCCTGAGGAGCTTACGGCTGTGAAGCTTGTGGAACCAAGCCCCAGTGTTCAGTACAGCCCTACTGCCAAGGCTTGTGAACCCCAAGCTACTGTCTCCAATTTCACTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

164

Amino Acids

18.15

Weight (kDa)

5.94

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 30 - 99 2.2e-28 Allene oxide cyclase
Allene_ox_cyc PF06351 98 - 161 8.5e-23 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 3 cut(s) 45, 87, 254
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 350, 434
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 3 cut(s) 101, 340, 364
AluBI AGCT 4 cut(s) 316, 391, 406, 467
AluI AGCT 4 cut(s) 316, 391, 406, 467
Alw26I GTCTC 3 cut(s) 126, 219, 478
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 384
BaeGI GKGCMC 2 cut(s) 39, 201
BanII GRGCYC 1 cut(s) 146
BauI CACGAG 1 cut(s) 194
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 411
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 3 cut(s) 126, 219, 478
BfaI CTAG 4 cut(s) 11, 29, 59, 490
BfoI RGCGCY 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 181
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 417
BpuMI CCSGG 1 cut(s) 146
BsaI GGTCTC 2 cut(s) 126, 219
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 1 cut(s) 423
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 2 cut(s) 65, 401
BseSI GKGCMC 2 cut(s) 39, 201
BseXI GCAGC 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 302
BsiSI CCGG 2 cut(s) 146, 222
BslFI GGGAC 1 cut(s) 270
BsmAI GTCTC 3 cut(s) 126, 219, 478
BsmFI GGGAC 1 cut(s) 270
Bso31I GGTCTC 2 cut(s) 126, 219
Bsp1286I GDGCHC 3 cut(s) 39, 146, 201
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 4 cut(s) 76, 120, 190, 270
BspACI CCGC 3 cut(s) 45, 87, 254
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 414
BspMI ACCTGC 1 cut(s) 181
BspTNI GGTCTC 2 cut(s) 126, 219
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 4 cut(s) 76, 120, 190, 270
BssSI CACGAG 1 cut(s) 194
BssT1I CCWWGG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 137, 472
Bst6I CTCTTC 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 155, 384
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 79, 123, 193, 273
BstMAI GTCTC 3 cut(s) 126, 219, 478
BstMBI GATC 4 cut(s) 76, 120, 190, 270
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 144
BstSLI GKGCMC 2 cut(s) 39, 201
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 430
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 281
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 349, 433
CviAII CATG 2 cut(s) 110, 308
CviQI GTAC 2 cut(s) 349, 433
DdeI CTNAG 2 cut(s) 155, 384
DpnI GATC 4 cut(s) 78, 122, 192, 272
DpnII GATC 4 cut(s) 76, 120, 190, 270
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 146
Eco31I GGTCTC 2 cut(s) 126, 219
Eco57I CTGAAG 1 cut(s) 215
Eco81I CCTNAGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 2 cut(s) 113, 311
FaiI YATR 5 cut(s) 111, 117, 217, 303, 309
FaqI GGGAC 1 cut(s) 270
FatI CATG 2 cut(s) 109, 307
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 317
FspBI CTAG 4 cut(s) 11, 29, 59, 490
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 58
HapII CCGG 2 cut(s) 146, 222
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 113, 311
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 1 cut(s) 67
HpaII CCGG 2 cut(s) 146, 222
Hpy166II GTNNAC 2 cut(s) 351, 458
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 29, 101
Hpy8I GTNNAC 2 cut(s) 351, 458
HpyAV CCTTC 6 cut(s) 8, 211, 239, 286, 346, 358
HpyCH4III ACNGT 2 cut(s) 137, 472
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 264, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 2 cut(s) 155, 384
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 113, 311
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 76, 120, 190, 270
LmnI GCTCC 2 cut(s) 52, 388
LpnPI CCDG 8 cut(s) 159, 179, 186, 235, 297, 335, 396, 436
Lsp1109I GCAGC 1 cut(s) 303
MaeI CTAG 4 cut(s) 11, 29, 59, 490
MaeII ACGT 1 cut(s) 39
MalI GATC 4 cut(s) 78, 122, 192, 272
MboI GATC 4 cut(s) 76, 120, 190, 270
MboII GAAGA 1 cut(s) 64
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 39, 146, 201
MluCI AATT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 3 cut(s) 43, 367, 379
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 114
MspI CCGG 2 cut(s) 146, 222
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 388
NciI CCSGG 1 cut(s) 146
NdeII GATC 4 cut(s) 76, 120, 190, 270
NlaIII CATG 2 cut(s) 113, 311
NlaIV GGNNCC 1 cut(s) 414
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PscI ACATGT 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 414
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 350, 434
RsaNI GTAC 2 cut(s) 349, 433
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 4 cut(s) 76, 120, 190, 270
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 3 cut(s) 39, 146, 201
SetI ASST 8 cut(s) 42, 156, 175, 231, 318, 393, 408, 469
SmiMI CAYNNNNRTG 1 cut(s) 114
Sse9I AATT 1 cut(s) 478
SsiI CCGC 3 cut(s) 45, 87, 254
SspMI CTAG 4 cut(s) 11, 29, 59, 490
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 137, 472
TaiI ACGT 1 cut(s) 42
TaqI TCGA 3 cut(s) 75, 140, 273
TasI AATT 1 cut(s) 478
TatI WGTACW 2 cut(s) 348, 432
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 316
TspRI CASTG 1 cut(s) 430
XbaI TCTAGA 1 cut(s) 28
XceI RCATGY 1 cut(s) 311
XspI CTAG 4 cut(s) 11, 29, 59, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.