Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

28791103 .. 28791947

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28021.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGTCTGCAAGCTCTCTCAAAGCCATTTCTTCTCTGTATCTCACCAATCCAATCAAGTCTGCTTCACCTTCTCAAACCCAAAGATTGTTGGGTTTCAATCTAACACACTCCTTCCCTGCCATCAAGTCCACACCAATCCACCAAGCCTCTTCAAACTCGAAGAGCTTCAACACCGCAGCTTTCTTCGGCCAGAAGCAGAAGACAGCAGAGCCCTCTACAAGACCCACTAAAGTTCAAGAGCTAAATGTGTACGAGATCAATGAGCGAGACAGAGGCAGCCCTGCTTACTTGAGATTGAGCAAGAAGGAGGTCAACTCACTCGGAGACCTAGTCCCATTCAGCAACAAGATCTACTCCGGTGACTTGGAAAAGAGGCTCGGGATCACTTCAGGGCTATGTGTGCTGATCCAAAACGTGCCGGAGAAGAAAGGTGACCGGTATGAGGCAATCTACAGCTTCTACTTCGGGGACTATGGTCACATTTCAGTTCAAGGAGCCTATTTGACATATGAAGACACCTACTTGGCTGTTACTGGTGGATCTGGGATCTTTGAGGGTGTGTACGGGCAGGTGAAGCTGAAGCAGATTGTGTTCCCCTTCAAGCTGTTTTACACGTTTTATTTGAAGGGTATTGCTGATTTGCCTGCTGAGCTTACCGGGAAGCCGGTAGCTCCGTCACCTAGCGTTGAGCCGTCTCCGGCAGCCAAGGCCACTGAACCCCAAGCAACTCTCAAGAACTTCACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

251

Amino Acids

27.35

Weight (kDa)

9.27

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	75 - 248	4.3e-100	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
Acc36I	ACCTGC	1 cut(s)	562
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	4 cut(s)	392, 403, 550, 557
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	2 cut(s)	375, 602
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	254, 566
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	7 cut(s)	100, 156, 172, 239, 494, 604, 628
AluBI	AGCT	9 cut(s)	15, 168, 182, 244, 459, 580, 607, 655, 674
AluI	AGCT	9 cut(s)	15, 168, 182, 244, 459, 580, 607, 655, 674
Alw26I	GTCTC	3 cut(s)	264, 321, 702
AlwI	GGATC	4 cut(s)	392, 403, 550, 557
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	190, 711
ApeKI	GCWGC	3 cut(s)	179, 279, 704
AsiGI	ACCGGT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	7 cut(s)	37, 60, 374, 446, 586, 672, 736
AvaI	CYCGRG	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	2 cut(s)	209, 522
BbvI	GCAGC	3 cut(s)	191, 291, 716
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	3 cut(s)	264, 321, 702
BfaI	CTAG	2 cut(s)	332, 684
BfmI	CTRYAG	1 cut(s)	454
BfuAI	ACCTGC	1 cut(s)	562
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	3 cut(s)	180, 280, 705
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	3 cut(s)	181, 281, 706
Bme1390I	CCNGG	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	477
BpiI	GAAGAC	2 cut(s)	209, 522
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	313, 719
BpuMI	CCSGG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	2 cut(s)	359, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	2 cut(s)	438, 667
Bse1I	ACTGG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	191, 291, 716
BshFI	GGCC	2 cut(s)	192, 713
BshTI	ACCGGT	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	6 cut(s)	360, 422, 439, 660, 668, 701
BslFI	GGGAC	2 cut(s)	320, 485
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	3 cut(s)	264, 321, 702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	2 cut(s)	320, 485
BsnI	GGCC	2 cut(s)	192, 713
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	192, 713
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	1 cut(s)	499
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	4 cut(s)	392, 403, 550, 557
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	438, 667
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	2 cut(s)	438, 667
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	708
Bst6I	CTCTTC	2 cut(s)	157, 158
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	13, 648
BstDEI	CTNAG	1 cut(s)	651
BstEII	GGTNACC	1 cut(s)	434
BstKTI	GATC	6 cut(s)	261, 354, 387, 411, 545, 552
BstMAI	GTCTC	3 cut(s)	264, 321, 702
BstMBI	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
BstMWI	GCNNNNNNNGC	4 cut(s)	403, 577, 652, 710
BstPAI	GACNNNNGTC	1 cut(s)	477
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	659
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	3 cut(s)	191, 291, 716
BstV2I	GAAGAC	2 cut(s)	209, 522
BstX2I	RGATCY	3 cut(s)	351, 542, 549
BstYI	RGATCY	3 cut(s)	351, 542, 549
BsuRI	GGCC	2 cut(s)	192, 713
BtsIMutI	CAGTG	1 cut(s)	714
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	2 cut(s)	13, 648
Cfr10I	RCCGGY	2 cut(s)	438, 667
Csp6I	GTAC	2 cut(s)	253, 565
CspAI	ACCGGT	1 cut(s)	438
CviQI	GTAC	2 cut(s)	253, 565
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	6 cut(s)	260, 353, 386, 410, 544, 551
DpnII	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	2 cut(s)	157, 158
EarI	CTCTTC	2 cut(s)	157, 158
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	321
Eco57I	CTGAAG	2 cut(s)	375, 602
Eco88I	CYCGRG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	702
FaiI	YATR	5 cut(s)	400, 444, 477, 511, 513
FaqI	GGGAC	2 cut(s)	320, 485
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	180, 280, 705
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	180, 280, 705
FspBI	CTAG	2 cut(s)	332, 684
GluI	GCNGC	3 cut(s)	180, 280, 705
HaeIII	GGCC	2 cut(s)	192, 713
HapII	CCGG	6 cut(s)	360, 422, 439, 660, 668, 701
Hin1I	GRCGYC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HpaII	CCGG	6 cut(s)	360, 422, 439, 660, 668, 701
HphI	GGTGA	7 cut(s)	37, 60, 374, 446, 586, 672, 736
Hpy166II	GTNNAC	4 cut(s)	132, 253, 316, 565
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	3 cut(s)	239, 382, 736
Hpy8I	GTNNAC	4 cut(s)	132, 253, 316, 565
HpyAV	CCTTC	5 cut(s)	81, 124, 301, 610, 622
HpyCH4IV	ACGT	2 cut(s)	417, 617
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	4 cut(s)	403, 577, 652, 710
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	2 cut(s)	417, 617
Hsp92I	GRCGYC	1 cut(s)	5
Kzo9I	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	497, 679
Lsp1109I	GCAGC	3 cut(s)	191, 291, 716
MaeI	CTAG	2 cut(s)	332, 684
MaeII	ACGT	2 cut(s)	417, 617
MaeIII	GTNAC	5 cut(s)	362, 434, 479, 532, 678
MalI	GATC	6 cut(s)	260, 353, 386, 410, 544, 551
MboI	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
MboII	GAAGA	7 cut(s)	24, 144, 175, 178, 214, 439, 527
MflI	RGATCY	3 cut(s)	351, 542, 549
MhlI	GDGCHC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	160, 226, 269, 304, 369, 439, 550
MroXI	GAANNNNTTC	1 cut(s)	167
MspI	CCGG	6 cut(s)	360, 422, 439, 660, 668, 701
MspR9I	CCNGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	4 cut(s)	403, 577, 652, 710
NciI	CCSGG	1 cut(s)	661
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	4 cut(s)	362, 434, 479, 678
PaqCI	CACCTGC	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	181, 281, 706
PshAI	GACNNNNGTC	1 cut(s)	477
PspEI	GGTNACC	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	499
PsuI	RGATCY	3 cut(s)	351, 542, 549
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	2 cut(s)	254, 566
RsaNI	GTAC	2 cut(s)	253, 565
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	3 cut(s)	180, 280, 705
Sau3AI	GATC	6 cut(s)	258, 351, 384, 408, 542, 549
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	1 cut(s)	216
SfcI	CTRYAG	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	292, 734
SmoI	CTYRAG	2 cut(s)	292, 734
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	2 cut(s)	332, 684
StyD4I	CCNGG	1 cut(s)	659
StyI	CCWWGG	1 cut(s)	708
TaiI	ACGT	2 cut(s)	420, 620
TaqI	TCGA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	4 cut(s)	362, 434, 479, 678
TseI	GCWGC	3 cut(s)	179, 279, 704
Tsp45I	GTSAC	4 cut(s)	362, 434, 479, 678
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	332, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.