Rh2AG567300

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002259
Physical Location & Seq
Reverse (-)
79841680 .. 79842811
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG567300.1

Sequence Viewer

Length: 555 bp
ATGGCTTGCTCAAGCTCTCCAAGACCCACAAAAGTTCAAGAGTTCCATGTGTATGAGATCAACGAACGAGACCGTTCGAGCCCGGCTTACCTTAGTTTGAGCCAGAAACCTGACCATTCGCTTGGAGATCTCGTGCCCTTCACTAACAAAATATACACTGGCGACCTTCAGAAACGATTGGGGATAACGGCGGGACTTTGCATTTTGATCGAAAGCAAGCCTGAAAAGAAGGGTGACCGATATGAGGCCATGTACAGCTTCTATTTTGGGGACTATGGTCACATTTCCGTCCAAGGACCGTACTTGACTTACGAGGACACGAGCTTGGCCGTGACCGGTGGTTCGGGGATATTCGAAGGAGTGTATGGACATGTCAAGCTGCACCAGATTGTGTTCCCCTTCAAAATCTTGTACACTTTTTACTTGAAGGGGATTGAGGACTTGCCTGAGGAGCTTACGGCTGTGAAGCTTGTGGAACCAAGCCCCAGTGTTCAGCCCAGCCCTGCTGCCAAGGCTTGTGAACCCCAAGCTACTGTCTCTAATTTCACTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

184

Amino Acids

20.42

Weight (kDa)

5.72

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 8 - 182 3.8e-95 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 152
AfaI GTAC 3 cut(s) 254, 302, 413
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 370
AgeI ACCGGT 1 cut(s) 335
AgsI TTSAA 3 cut(s) 38, 403, 427
AluBI AGCT 7 cut(s) 15, 258, 324, 379, 454, 469, 530
AluI AGCT 7 cut(s) 15, 258, 324, 379, 454, 469, 530
Alw26I GTCTC 2 cut(s) 63, 541
AoxI GGCC 2 cut(s) 246, 327
ApeKI GCWGC 2 cut(s) 379, 506
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AsiGI ACCGGT 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 83
BauI CACGAG 2 cut(s) 131, 319
BbvI GCAGC 2 cut(s) 366, 493
BceAI ACGGC 3 cut(s) 204, 314, 474
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 63, 541
BfaI CTAG 1 cut(s) 553
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 380, 507
BlsI GCNGC 2 cut(s) 381, 508
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 480
BoxI GACNNNNGTC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 292, 510
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 163, 486
Bse21I CCTNAGG 1 cut(s) 447
BseDI CCNNGG 2 cut(s) 292, 510
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 163, 486
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 366, 493
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 2 cut(s) 248, 329
BshTI ACCGGT 1 cut(s) 335
BsiSI CCGG 2 cut(s) 83, 336
BslFI GGGAC 2 cut(s) 207, 284
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 63, 541
BsmFI GGGAC 2 cut(s) 207, 284
BsnI GGCC 2 cut(s) 248, 329
Bso31I GGTCTC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 83, 138
Bsp1407I TGTACA 2 cut(s) 252, 411
Bsp143I GATC 3 cut(s) 57, 127, 207
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 248, 329
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 477
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 335
BsrGI TGTACA 2 cut(s) 252, 411
BsrI ACTGG 2 cut(s) 163, 486
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 292, 510
BssMI GATC 3 cut(s) 57, 127, 207
BssSI CACGAG 2 cut(s) 131, 319
BssT1I CCWWGG 2 cut(s) 292, 510
Bst2BI CACGAG 2 cut(s) 131, 319
Bst4CI ACNGT 3 cut(s) 74, 300, 535
BstAUI TGTACA 2 cut(s) 252, 411
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 7, 218
BstDEI CTNAG 2 cut(s) 92, 447
BstEII GGTNACC 1 cut(s) 233
BstKTI GATC 3 cut(s) 60, 130, 210
BstMAI GTCTC 2 cut(s) 63, 541
BstMBI GATC 3 cut(s) 57, 127, 207
BstMWI GCNNNNNNNGC 2 cut(s) 451, 512
BstNSI RCATGY 1 cut(s) 374
BstPAI GACNNNNGTC 1 cut(s) 276
BstPI GGTNACC 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 366, 493
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 248, 329
BtsIMutI CAGTG 2 cut(s) 156, 493
Cac8I GCNNGC 2 cut(s) 7, 218
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 253, 301, 412
CspAI ACCGGT 1 cut(s) 335
CviAII CATG 3 cut(s) 47, 250, 371
CviQI GTAC 3 cut(s) 253, 301, 412
DdeI CTNAG 2 cut(s) 92, 447
DpnI GATC 3 cut(s) 59, 129, 209
DpnII GATC 3 cut(s) 57, 127, 207
EaeI YGGCCR 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 292, 510
Eco24I GRGCYC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 447
Eco91I GGTNACC 1 cut(s) 233
EcoO65I GGTNACC 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 292, 510
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 2 cut(s) 292, 510
FaeI CATG 3 cut(s) 50, 253, 374
FaiI YATR 8 cut(s) 48, 54, 154, 243, 251, 276, 366, 372
FaqI GGGAC 2 cut(s) 207, 284
FatI CATG 3 cut(s) 46, 249, 370
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 380, 507
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 380, 507
FspBI CTAG 1 cut(s) 553
GluI GCNGC 2 cut(s) 380, 507
GsaI CCCAGC 1 cut(s) 501
HaeIII GGCC 2 cut(s) 248, 329
HapII CCGG 2 cut(s) 83, 336
Hin1II CATG 3 cut(s) 50, 253, 374
HindIII AAGCTT 1 cut(s) 467
HpaII CCGG 2 cut(s) 83, 336
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 414, 521
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 414, 521
HpyAV CCTTC 6 cut(s) 148, 176, 223, 350, 409, 421
HpyCH4III ACNGT 3 cut(s) 74, 300, 535
HpyCH4V TGCA 2 cut(s) 201, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 512
HpyF3I CTNAG 2 cut(s) 92, 447
Hsp92II CATG 3 cut(s) 50, 253, 374
Kzo9I GATC 3 cut(s) 57, 127, 207
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 2 cut(s) 366, 493
MaeI CTAG 1 cut(s) 553
MaeIII GTNAC 3 cut(s) 233, 278, 331
MalI GATC 3 cut(s) 59, 129, 209
MboI GATC 3 cut(s) 57, 127, 207
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 83, 138
MluCI AATT 1 cut(s) 541
MnlI CCTC 4 cut(s) 238, 307, 430, 442
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 2 cut(s) 83, 336
MspR9I CCNGG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 451, 512
NciI CCSGG 1 cut(s) 83
NdeII GATC 3 cut(s) 57, 127, 207
NlaIII CATG 3 cut(s) 50, 253, 374
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 3 cut(s) 233, 278, 331
NspI RCATGY 1 cut(s) 374
NspV TTCGAA 1 cut(s) 354
PciI ACATGT 1 cut(s) 370
PinAI ACCGGT 1 cut(s) 335
PkrI GCNGC 2 cut(s) 381, 508
PscI ACATGT 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 254, 302, 413
RsaNI GTAC 3 cut(s) 253, 301, 412
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 2 cut(s) 380, 507
Sau3AI GATC 3 cut(s) 57, 127, 207
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 83, 138
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 1 cut(s) 541
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 292, 510
TaaI ACNGT 3 cut(s) 74, 300, 535
TaqI TCGA 3 cut(s) 77, 210, 354
TaqII GACCGA 1 cut(s) 252
TasI AATT 1 cut(s) 541
TatI WGTACW 2 cut(s) 252, 411
TscAI CASTG 2 cut(s) 163, 493
TseFI GTSAC 3 cut(s) 233, 278, 331
TseI GCWGC 2 cut(s) 379, 506
Tsp45I GTSAC 3 cut(s) 233, 278, 331
TspGWI ACGGA 1 cut(s) 277
TspRI CASTG 2 cut(s) 163, 493
VpaK11BI GGWCC 1 cut(s) 296
XceI RCATGY 1 cut(s) 374
XspI CTAG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.