MD09G1084600.v1.1

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002259
Physical Location & Seq
Forward (+)
6063050 .. 6064217
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1084600.v1.1.491

Sequence Viewer

Length: 555 bp
ATGGCCTGCTCAAGCTCTTCAAGACCCACAAAAGTTCAAGAACTCAACGTGTACGAGATCAACGAGCGAGATCGTTCAAGCCCTGCGTATCTCAGTTTAAGCCAGAAACCTGTGCATGCCCTCGGAGACCTTGTGCCCTTCACTAACAAAATATACACCGGAGATCTTCAGAAACGGTTGGGGATAACGGCGGGAATCTGCATTTTGATCGAAAACAAGCCGGAGAAGAAAGGAGATCGATACGAGGCAATTTACAGCTTCTATTTCGGGAACTACGGCCACGTGGCGGTTCAGGGGCCGTACTTGACTTACGAGGACACGTATCTGGCTGTGACTGGTGGGTCTGGGATTTTCGAAGGGGCGTACGGGCAGGTGAAGCTGCACCAGATTTTGTTCCCCTTCAAGATTTTGTACACATTTTATCTGAAGGGGATTGAGGATTTGCCTGAGGAGCTTACAAATGTGAAGGTTGTGGAGCCCGGCCCTGGTGTGGAGCCCAGCCCTGCTGCCAATGCCTGTGAGGCCCATGCCACCGTGTCCAACTTCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

185

Amino Acids

20.29

Weight (kDa)

5.57

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 8 - 182 3.7e-93 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 361
AasI GACNNNNNNGTC 1 cut(s) 340
Acc36I ACCTGC 1 cut(s) 361
AciI CCGC 2 cut(s) 191, 287
AcoI YGGCCR 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 152, 446
AcvI CACGTG 1 cut(s) 283
AfaI GTAC 4 cut(s) 53, 302, 365, 413
AfiI CCNNNNNNNGG 3 cut(s) 286, 485, 490
AflIII ACRYGT 2 cut(s) 48, 318
AgsI TTSAA 4 cut(s) 21, 38, 78, 403
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 4 cut(s) 15, 258, 379, 454
AluI AGCT 4 cut(s) 15, 258, 379, 454
Alw26I GTCTC 1 cut(s) 120
AoxI GGCC 5 cut(s) 3, 277, 296, 481, 522
ApeKI GCWGC 2 cut(s) 379, 506
AspS9I GGNCC 3 cut(s) 296, 482, 523
AsuC2I CCSGG 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 385, 538
AsuII TTCGAA 1 cut(s) 354
AxyI CCTNAGG 1 cut(s) 447
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 2 cut(s) 480, 498
BbrPI CACGTG 1 cut(s) 283
BbvI GCAGC 2 cut(s) 366, 493
BceAI ACGGC 3 cut(s) 204, 283, 292
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 486
BcnI CCSGG 1 cut(s) 480
BcoDI GTCTC 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 163
BisI GCNGC 2 cut(s) 380, 507
BlsI GCNGC 2 cut(s) 381, 508
Bme1390I CCNGG 2 cut(s) 480, 486
BmgT120I GGNCC 3 cut(s) 296, 482, 523
BmiI GGNNCC 3 cut(s) 297, 477, 495
BmrFI CCNGG 2 cut(s) 480, 486
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 480
Bsa29I ATCGAT 1 cut(s) 238
BsaAI YACGTR 2 cut(s) 283, 321
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 121, 484
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 485, 490
Bse1I ACTGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 486
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 121, 484
BseLI CCNNNNNNNGG 3 cut(s) 286, 485, 490
BseMII CTCAG 2 cut(s) 106, 438
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 2 cut(s) 366, 493
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 365
BshFI GGCC 5 cut(s) 5, 279, 298, 483, 524
BshVI ATCGAT 1 cut(s) 238
BsiSI CCGG 3 cut(s) 159, 221, 480
BsiWI CGTACG 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 286, 485, 490
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 5 cut(s) 5, 279, 298, 483, 524
Bso31I GGTCTC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 3 cut(s) 138, 480, 498
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 5 cut(s) 57, 70, 163, 207, 235
BspACI CCGC 2 cut(s) 191, 287
BspANI GGCC 5 cut(s) 5, 279, 298, 483, 524
BspCNI CTCAG 2 cut(s) 105, 439
BspDI ATCGAT 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 297, 477, 495
BspMI ACCTGC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 121, 484
BssMI GATC 5 cut(s) 57, 70, 163, 207, 235
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 177, 535
Bst6I CTCTTC 1 cut(s) 22
BstAUI TGTACA 1 cut(s) 411
BstBAI YACGTR 2 cut(s) 283, 321
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 7, 117
BstDEI CTNAG 2 cut(s) 92, 447
BstKTI GATC 5 cut(s) 60, 73, 166, 210, 238
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 5 cut(s) 57, 70, 163, 207, 235
BstMWI GCNNNNNNNGC 4 cut(s) 376, 451, 512, 521
BstNI CCWGG 1 cut(s) 486
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 478, 484
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 366, 493
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 5 cut(s) 5, 279, 298, 483, 524
BsuTUI ATCGAT 1 cut(s) 238
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 7, 117
Cfr13I GGNCC 3 cut(s) 296, 482, 523
ClaI ATCGAT 1 cut(s) 238
Csp6I GTAC 4 cut(s) 52, 301, 364, 412
CviAII CATG 2 cut(s) 116, 527
CviQI GTAC 4 cut(s) 52, 301, 364, 412
DdeI CTNAG 2 cut(s) 92, 447
DpnI GATC 5 cut(s) 59, 72, 165, 209, 237
DpnII GATC 5 cut(s) 57, 70, 163, 207, 235
DrdI GACNNNNNNGTC 1 cut(s) 340
DseDI GACNNNNNNGTC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco24I GRGCYC 2 cut(s) 480, 498
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 152, 446
Eco72I CACGTG 1 cut(s) 283
Eco81I CCTNAGG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 484
EcoT38I GRGCYC 2 cut(s) 480, 498
FaeI CATG 2 cut(s) 119, 530
FaiI YATR 3 cut(s) 117, 154, 528
FatI CATG 2 cut(s) 115, 526
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 380, 507
FriOI GRGCYC 2 cut(s) 480, 498
Fsp4HI GCNGC 2 cut(s) 380, 507
GluI GCNGC 2 cut(s) 380, 507
GsaI CCCAGC 1 cut(s) 501
HaeIII GGCC 5 cut(s) 5, 279, 298, 483, 524
HapII CCGG 3 cut(s) 159, 221, 480
Hin1II CATG 2 cut(s) 119, 530
HinfI GANTC 1 cut(s) 195
HpaII CCGG 3 cut(s) 159, 221, 480
HphI GGTGA 2 cut(s) 385, 538
Hpy166II GTNNAC 2 cut(s) 52, 414
Hpy188I TCNGA 3 cut(s) 125, 171, 426
Hpy188III TCNNGA 4 cut(s) 21, 38, 268, 403
Hpy8I GTNNAC 2 cut(s) 52, 414
HpyAV CCTTC 5 cut(s) 148, 350, 409, 421, 460
HpyCH4III ACNGT 2 cut(s) 177, 535
HpyCH4IV ACGT 3 cut(s) 48, 282, 320
HpyCH4V TGCA 3 cut(s) 115, 201, 382
HpyF10VI GCNNNNNNNGC 4 cut(s) 376, 451, 512, 521
HpyF3I CTNAG 2 cut(s) 92, 447
HpySE526I ACGT 3 cut(s) 48, 282, 320
Hsp92II CATG 2 cut(s) 119, 530
Kzo9I GATC 5 cut(s) 57, 70, 163, 207, 235
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 3 cut(s) 451, 475, 493
Lsp1109I GCAGC 2 cut(s) 366, 493
MaeII ACGT 3 cut(s) 48, 282, 320
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 59, 72, 165, 209, 237
MboI GATC 5 cut(s) 57, 70, 163, 207, 235
MboII GAAGA 3 cut(s) 9, 158, 238
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 138, 480, 498
MluCI AATT 1 cut(s) 249
MnlI CCTC 6 cut(s) 131, 238, 307, 430, 442, 514
MseI TTAA 1 cut(s) 98
MspI CCGG 3 cut(s) 159, 221, 480
MspR9I CCNGG 2 cut(s) 480, 486
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 4 cut(s) 376, 451, 512, 521
NciI CCSGG 1 cut(s) 480
NdeII GATC 5 cut(s) 57, 70, 163, 207, 235
NlaIII CATG 2 cut(s) 119, 530
NlaIV GGNNCC 3 cut(s) 297, 477, 495
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 119
PaqCI CACCTGC 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 195
Pfl23II CGTACG 1 cut(s) 363
PkrI GCNGC 2 cut(s) 381, 508
PmaCI CACGTG 1 cut(s) 283
PmlI CACGTG 1 cut(s) 283
Ppu21I YACGTR 2 cut(s) 283, 321
Psp6I CCWGG 1 cut(s) 484
PspCI CACGTG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 484
PspLI CGTACG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 297, 477, 495
PspPI GGNCC 3 cut(s) 296, 482, 523
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 4 cut(s) 53, 302, 365, 413
RsaNI GTAC 4 cut(s) 52, 301, 364, 412
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 2 cut(s) 380, 507
Sau3AI GATC 5 cut(s) 57, 70, 163, 207, 235
Sau96I GGNCC 3 cut(s) 296, 482, 523
ScrFI CCNGG 2 cut(s) 480, 486
SduI GDGCHC 3 cut(s) 138, 480, 498
SfuI TTCGAA 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
SphI GCATGC 1 cut(s) 119
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 191, 287
StyD4I CCNGG 2 cut(s) 478, 484
TaaI ACNGT 2 cut(s) 177, 535
TaiI ACGT 3 cut(s) 51, 285, 323
TaqI TCGA 3 cut(s) 210, 238, 354
TasI AATT 1 cut(s) 249
TatI WGTACW 1 cut(s) 411
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 379, 506
Tsp45I GTSAC 1 cut(s) 331
XceI RCATGY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.