Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

3312845 .. 3314437

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1047500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGTCTGCAAGTTCTCTCAGAGCGATCTCGTCTCTCCATTTCTCCAACTCCATCAGGTCTCCTCCTTCATCTTCTCGAGCTCAGAGACTGTTGGGCTTCAATCTCTCACACTCCTTCCCGACCCTTAAATCCTCATCAACCAATCAAGTCCTCTCAGCCTCCAGCAACTTCACCACCTCAGCTTTCTTCTGCAAGAACAAGAAGGAACCAGCTGATTCTGATTCTCCACGACCCACAAAAGTTCAAGAACTGCATGTGTACGAGATCAACGAGAGAGACAGAGGCAGCCCGGCGTACCTAAGACTGAGCCAGAAACAAGTCAACACTCTCGGCGATCTCGTCCCTTTCAGCAACAAGATCTACTCCGGCGACTTGGAAAAACGTCTTGGGATCACAGCAGGCCTGTGCGTTTTGATCCAAAACTTCCCCGAGAAAAAAGGAGACAGGTACGAGGCAATATACAGCTTCTACTTCGGAGACTACGGCCACATTTCAGTCCAGGGAGCTTATCTGACCTACGAAGACACGTATCTGGCCGTGACCGGTGGATCCGGAATCTTCGAGGGAGTGTACGGACAGGTCAAGTTGAAGCAGATAGTGTTTCCCTTCAAGCTGTTTTACACGTTTTACCTGAAGGGGATCAAGGACTTGCCGGTTGAGCTTACCGGTAAGCCTGTCGCTCCGACGCCGAGCGTTGAGCCGTCGGCGGCTGCCAAGGCCACCGAGCCTAGTGCCACCGTCAAAAATTTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

254

Amino Acids

27.78

Weight (kDa)

9.25

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	78 - 251	3.4e-99	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	554
AciI	CCGC	1 cut(s)	710
AclWI	GGATC	5 cut(s)	401, 412, 546, 559, 650
AcoI	YGGCCR	2 cut(s)	487, 537
AcsI	RAATTY	1 cut(s)	748
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	2 cut(s)	5, 689
AfaI	GTAC	4 cut(s)	263, 299, 452, 575
AflIII	ACRYGT	2 cut(s)	528, 624
AgeI	ACCGGT	2 cut(s)	545, 668
AgsI	TTSAA	4 cut(s)	103, 248, 592, 613
AjnI	CCWGG	1 cut(s)	501
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	7 cut(s)	83, 185, 215, 468, 509, 616, 664
AluI	AGCT	7 cut(s)	83, 185, 215, 468, 509, 616, 664
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	6 cut(s)	39, 66, 82, 273, 438, 474
AlwI	GGATC	5 cut(s)	401, 412, 546, 559, 650
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	2 cut(s)	78, 431
Aor13HI	TCCGGA	1 cut(s)	554
AoxI	GGCC	4 cut(s)	403, 487, 537, 720
ApeKI	GCWGC	2 cut(s)	288, 713
ApoI	RAATTY	1 cut(s)	748
AsiGI	ACCGGT	2 cut(s)	545, 668
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	166
AvaI	CYCGRG	2 cut(s)	78, 431
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	300, 700
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	3 cut(s)	502, 524, 688
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	6 cut(s)	39, 66, 82, 273, 438, 474
BfaI	CTAG	1 cut(s)	732
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	3 cut(s)	289, 711, 714
BlsI	GCNGC	3 cut(s)	290, 712, 715
Bme1390I	CCNGG	2 cut(s)	293, 503
BmeT110I	CYCGRG	2 cut(s)	78, 431
BmiI	GGNNCC	2 cut(s)	210, 553
BmrFI	CCNGG	2 cut(s)	293, 503
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	148
Bpu10I	CCTNAGC	1 cut(s)	181
BpuMI	CCSGG	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	531
BsaHI	GRCGYC	2 cut(s)	5, 689
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	502, 717
BsaWI	WCCGGW	3 cut(s)	545, 554, 668
Bse118I	RCCGGY	3 cut(s)	545, 655, 668
BseAI	TCCGGA	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	502, 717
BseMII	CTCAG	5 cut(s)	34, 98, 171, 195, 299
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	300, 700
BshFI	GGCC	4 cut(s)	405, 489, 539, 722
BshTI	ACCGGT	2 cut(s)	545, 668
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	2 cut(s)	78, 431
BsiSI	CCGG	6 cut(s)	293, 369, 546, 555, 656, 669
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	6 cut(s)	39, 66, 82, 273, 438, 474
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	4 cut(s)	405, 489, 539, 722
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	2 cut(s)	78, 431
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	554
Bsp143I	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
BspACI	CCGC	1 cut(s)	710
BspANI	GGCC	4 cut(s)	405, 489, 539, 722
BspCNI	CTCAG	5 cut(s)	33, 97, 170, 194, 300
BspEI	TCCGGA	1 cut(s)	554
BspLI	GGNNCC	2 cut(s)	210, 553
BspPI	GGATC	5 cut(s)	401, 412, 546, 559, 650
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	3 cut(s)	545, 655, 668
BssAI	RCCGGY	3 cut(s)	545, 655, 668
BssECI	CCNNGG	2 cut(s)	502, 717
BssMI	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
BssNI	GRCGYC	2 cut(s)	5, 689
BssT1I	CCWWGG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	2 cut(s)	93, 742
BstACI	GRCGYC	2 cut(s)	5, 689
BstBAI	YACGTR	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	6 cut(s)	20, 84, 157, 181, 302, 308
BstKTI	GATC	8 cut(s)	30, 270, 340, 363, 396, 420, 554, 645
BstMAI	GTCTC	6 cut(s)	39, 66, 82, 273, 438, 474
BstMBI	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	661, 719
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	2 cut(s)	291, 501
BstV1I	GCAGC	2 cut(s)	300, 700
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	2 cut(s)	360, 551
BstYI	RGATCY	2 cut(s)	360, 551
BsuRI	GGCC	4 cut(s)	405, 489, 539, 722
Cac8I	GCNNGC	1 cut(s)	403
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr10I	RCCGGY	3 cut(s)	545, 655, 668
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	4 cut(s)	262, 298, 451, 574
CspAI	ACCGGT	2 cut(s)	545, 668
CviAII	CATG	1 cut(s)	257
CviQI	GTAC	4 cut(s)	262, 298, 451, 574
DdeI	CTNAG	6 cut(s)	20, 84, 157, 181, 302, 308
DpnI	GATC	8 cut(s)	29, 269, 339, 362, 395, 419, 553, 644
DpnII	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
EaeI	YGGCCR	2 cut(s)	487, 537
Ecl136II	GAGCTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	717
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	2 cut(s)	78, 431
EcoICRI	GAGCTC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	717
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	717
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	260
FaiI	YATR	2 cut(s)	258, 463
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	289, 711, 714
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	289, 711, 714
FspBI	CTAG	1 cut(s)	732
GluI	GCNGC	3 cut(s)	289, 711, 714
GsuI	CTGGAG	1 cut(s)	148
HaeIII	GGCC	4 cut(s)	405, 489, 539, 722
HapII	CCGG	6 cut(s)	293, 369, 546, 555, 656, 669
HgaI	GACGC	1 cut(s)	697
Hin1I	GRCGYC	2 cut(s)	5, 689
Hin1II	CATG	1 cut(s)	260
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	3 cut(s)	218, 224, 558
HpaII	CCGG	6 cut(s)	293, 369, 546, 555, 656, 669
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	262, 325, 574
Hpy188I	TCNGA	6 cut(s)	23, 87, 223, 479, 516, 687
Hpy188III	TCNNGA	4 cut(s)	78, 121, 248, 555
Hpy8I	GTNNAC	3 cut(s)	262, 325, 574
Hpy99I	CGWCG	2 cut(s)	691, 709
HpyAV	CCTTC	5 cut(s)	78, 127, 199, 619, 631
HpyCH4III	ACNGT	2 cut(s)	93, 742
HpyCH4IV	ACGT	3 cut(s)	385, 530, 626
HpyCH4V	TGCA	3 cut(s)	11, 195, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	661, 719
HpyF3I	CTNAG	6 cut(s)	20, 84, 157, 181, 302, 308
HpySE526I	ACGT	3 cut(s)	385, 530, 626
Hsp92I	GRCGYC	2 cut(s)	5, 689
Hsp92II	CATG	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	554
Kzo9I	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
LmnI	GCTCC	2 cut(s)	506, 688
Lsp1109I	GCAGC	2 cut(s)	300, 700
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	3 cut(s)	385, 530, 626
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	8 cut(s)	29, 269, 339, 362, 395, 419, 553, 644
MboI	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
MboII	GAAGA	4 cut(s)	66, 181, 536, 553
MflI	RGATCY	2 cut(s)	360, 551
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	748
MmeI	TCCRAC	2 cut(s)	72, 710
MnlI	CCTC	8 cut(s)	75, 145, 164, 172, 190, 278, 448, 559
MroI	TCCGGA	1 cut(s)	554
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	6 cut(s)	293, 369, 546, 555, 656, 669
MspR9I	CCNGG	2 cut(s)	293, 503
MvaI	CCWGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	661, 719
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	2 cut(s)	210, 553
NmeAIII	GCCGAG	2 cut(s)	312, 717
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 339
PfeI	GAWTC	3 cut(s)	218, 224, 558
PinAI	ACCGGT	2 cut(s)	545, 668
PkrI	GCNGC	3 cut(s)	290, 712, 715
Ppu21I	YACGTR	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	210, 553
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	360, 551
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	4 cut(s)	263, 299, 452, 575
RsaNI	GTAC	4 cut(s)	262, 298, 451, 574
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	289, 711, 714
Sau3AI	GATC	8 cut(s)	27, 267, 337, 360, 393, 417, 551, 642
ScrFI	CCNGG	2 cut(s)	293, 503
SduI	GDGCHC	1 cut(s)	85
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	748
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	1 cut(s)	732
SstI	GAGCTC	1 cut(s)	85
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	291, 501
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	2 cut(s)	93, 742
TaiI	ACGT	3 cut(s)	388, 533, 629
TaqI	TCGA	2 cut(s)	79, 564
TasI	AATT	1 cut(s)	748
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	218, 224, 558
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	288, 713
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	591
XapI	RAATTY	1 cut(s)	748
XceI	RCATGY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.