Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

3176493 .. 3178156

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1045900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGTCTGCAAGCTCTCTCGAAGCGATCTCCTCCCTCCATTTCTCCAACTCGATCAGGTCTCCTCCTCCATCTTCTCAAGCTCAAAGACTGTTGGGCTTCAGTCTCTCTCGCTCCTTCCCAACCCTTAAATCCGCATCGACCAAGCAATCCCTTTCAACCCCCAGAAACTTCACCACCTCAGCTTTCTTCGGCAAGAAGAAGGAACCAGCTGACTCTGATTCTTCACGACCCACAAAAGTTCAAGAACTGAATGTGTACGAGATCAATGAGAGAGACAGAGGCAGCCCAGCATACCTAAGACTGAGCAAGAAAGAAGTCAACTCCCTCGGCGACCTCGTCCCCTTCAGCAACAAGATCTACTCCGGCGACCTGGAAAAACGTCTTGGAATCACAGCAGGCCTGTGCGTTTTGATCCAAAACTTTCCCGAGAAAAAAGGAGACAGGTACGAGGCAATCTACAGCTTCTACTTCGGAGACTACGGCCACATTTCAGTTCAGGGAGCTTATCTGACCTACGAGGACACGTACATGGCCGTGACCGGTGGATCTGGGATCTTCGAGGGAGTGTACGGACAAGTCAAGGTGAAGCAGATTGTGTTTCCCATCAAGCTGTTTTACACGTTTTATTTGAAGGGCATTAAGGATTTGCCGGTTGAGCTTACCGGGAAGCCGGTCGCTCCGTCTCCCAGCGTCGAGCCGTCGGCAGCCGCCAAGGCCACTGAGCCCAGTGCCACCATCAAAAACTTTACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

253

Amino Acids

27.59

Weight (kDa)

9.28

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	77 - 250	5.4e-99	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 711
AclWI	GGATC	3 cut(s)	409, 556, 563
AcoI	YGGCCR	2 cut(s)	484, 534
AcuI	CTGAAG	2 cut(s)	85, 331
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	260, 449, 530, 572
AflIII	ACRYGT	2 cut(s)	525, 621
AgeI	ACCGGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	159, 245, 634
AjnI	CCWGG	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AluBI	AGCT	8 cut(s)	15, 83, 185, 212, 465, 506, 613, 661
AluI	AGCT	8 cut(s)	15, 83, 185, 212, 465, 506, 613, 661
Alw26I	GTCTC	6 cut(s)	66, 110, 270, 435, 471, 690
AlwI	GGATC	3 cut(s)	409, 556, 563
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	4 cut(s)	400, 484, 534, 717
ApeKI	GCWGC	2 cut(s)	285, 707
AsiGI	ACCGGT	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	667
AsuHPI	GGTGA	2 cut(s)	166, 598
AvaI	CYCGRG	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	729
BbvCI	CCTCAGC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	297, 719
BccI	CCATC	3 cut(s)	79, 614, 746
BceAI	ACGGC	3 cut(s)	499, 521, 685
BciT130I	CCWGG	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	667
BcoDI	GTCTC	6 cut(s)	66, 110, 270, 435, 471, 690
BfmI	CTRYAG	1 cut(s)	460
BglI	GCCNNNNNGGC	1 cut(s)	716
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	3 cut(s)	286, 708, 711
BlsI	GCNGC	3 cut(s)	287, 709, 712
Bme1390I	CCNGG	2 cut(s)	374, 667
BmeT110I	CYCGRG	1 cut(s)	428
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	374, 667
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	328, 714
BsaWI	WCCGGW	1 cut(s)	542
Bse118I	RCCGGY	3 cut(s)	542, 652, 673
Bse1I	ACTGG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	328, 714
BseMII	CTCAG	3 cut(s)	195, 296, 714
BseNI	ACTGG	1 cut(s)	729
BseRI	GAGGAG	3 cut(s)	22, 54, 57
BseXI	GCAGC	2 cut(s)	297, 719
BseYI	CCCAGC	2 cut(s)	289, 689
Bsh1285I	CGRYCG	1 cut(s)	678
BshFI	GGCC	4 cut(s)	402, 486, 536, 719
BshTI	ACCGGT	1 cut(s)	542
BsiEI	CGRYCG	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	5 cut(s)	366, 543, 653, 666, 674
BslFI	GGGAC	1 cut(s)	326
BsmAI	GTCTC	6 cut(s)	66, 110, 270, 435, 471, 690
BsmBI	CGTCTC	1 cut(s)	690
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	402, 486, 536, 719
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp143I	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
BspACI	CCGC	2 cut(s)	135, 711
BspANI	GGCC	4 cut(s)	402, 486, 536, 719
BspCNI	CTCAG	3 cut(s)	194, 297, 715
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	409, 556, 563
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	3 cut(s)	542, 652, 673
BsrI	ACTGG	1 cut(s)	729
BssAI	RCCGGY	3 cut(s)	542, 652, 673
BssECI	CCNNGG	2 cut(s)	328, 714
BssMI	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	13, 400
BstDEI	CTNAG	4 cut(s)	181, 299, 305, 723
BstKTI	GATC	7 cut(s)	30, 57, 267, 360, 417, 551, 558
BstMAI	GTCTC	6 cut(s)	66, 110, 270, 435, 471, 690
BstMBI	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
BstMCI	CGRYCG	1 cut(s)	678
BstMWI	GCNNNNNNNGC	2 cut(s)	658, 716
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	372, 665
BstSFI	CTRYAG	1 cut(s)	460
BstV1I	GCAGC	2 cut(s)	297, 719
BstX2I	RGATCY	3 cut(s)	357, 548, 555
BstYI	RGATCY	3 cut(s)	357, 548, 555
BsuRI	GGCC	4 cut(s)	402, 486, 536, 719
BtsIMutI	CAGTG	2 cut(s)	720, 736
Cac8I	GCNNGC	2 cut(s)	13, 400
Cfr10I	RCCGGY	3 cut(s)	542, 652, 673
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	4 cut(s)	259, 448, 529, 571
CspAI	ACCGGT	1 cut(s)	542
CviAII	CATG	1 cut(s)	532
CviQI	GTAC	4 cut(s)	259, 448, 529, 571
DdeI	CTNAG	4 cut(s)	181, 299, 305, 723
DpnI	GATC	7 cut(s)	29, 56, 266, 359, 416, 550, 557
DpnII	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
EaeI	YGGCCR	2 cut(s)	484, 534
Eco130I	CCWWGG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	85, 331
Eco88I	CYCGRG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	690
FaeI	CATG	1 cut(s)	535
FaiI	YATR	2 cut(s)	295, 533
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	531
Fnu4HI	GCNGC	3 cut(s)	286, 708, 711
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	3 cut(s)	286, 708, 711
GluI	GCNGC	3 cut(s)	286, 708, 711
GsaI	CCCAGC	2 cut(s)	293, 693
HaeIII	GGCC	4 cut(s)	402, 486, 536, 719
HapII	CCGG	5 cut(s)	366, 543, 653, 666, 674
HgaI	GACGC	1 cut(s)	682
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	3 cut(s)	215, 221, 390
HpaII	CCGG	5 cut(s)	366, 543, 653, 666, 674
HphI	GGTGA	2 cut(s)	166, 598
Hpy166II	GTNNAC	3 cut(s)	259, 322, 571
Hpy188I	TCNGA	3 cut(s)	220, 476, 513
Hpy188III	TCNNGA	4 cut(s)	20, 228, 245, 428
Hpy8I	GTNNAC	3 cut(s)	259, 322, 571
Hpy99I	CGWCG	2 cut(s)	698, 706
HpyAV	CCTTC	4 cut(s)	127, 196, 355, 628
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	3 cut(s)	382, 527, 623
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	658, 716
HpyF3I	CTNAG	4 cut(s)	181, 299, 305, 723
HpySE526I	ACGT	3 cut(s)	382, 527, 623
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
LmnI	GCTCC	3 cut(s)	119, 503, 685
Lsp1109I	GCAGC	2 cut(s)	297, 719
LweI	GCATC	1 cut(s)	146
MaeII	ACGT	3 cut(s)	382, 527, 623
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	7 cut(s)	29, 56, 266, 359, 416, 550, 557
MboI	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
MboII	GAAGA	5 cut(s)	66, 181, 211, 216, 550
MflI	RGATCY	3 cut(s)	357, 548, 555
MhlI	GDGCHC	1 cut(s)	729
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	72
MseI	TTAA	2 cut(s)	129, 642
MslI	CAYNNNNRTG	2 cut(s)	530, 536
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	5 cut(s)	366, 543, 653, 666, 674
MspR9I	CCNGG	2 cut(s)	374, 667
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	658, 716
NciI	CCSGG	1 cut(s)	667
NdeII	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
NlaIII	CATG	1 cut(s)	535
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	538
PceI	AGGCCT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	221, 390
PflFI	GACNNNGTC	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	287, 709, 712
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	372
PspFI	CCCAGC	2 cut(s)	289, 689
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	207
PsuI	RGATCY	3 cut(s)	357, 548, 555
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	260, 449, 530, 572
RsaNI	GTAC	4 cut(s)	259, 448, 529, 571
RseI	CAYNNNNRTG	2 cut(s)	530, 536
SaqAI	TTAA	2 cut(s)	129, 642
SatI	GCNGC	3 cut(s)	286, 708, 711
Sau3AI	GATC	7 cut(s)	27, 54, 264, 357, 414, 548, 555
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	374, 667
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	1 cut(s)	460
SmiMI	CAYNNNNRTG	2 cut(s)	530, 536
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	2 cut(s)	135, 711
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	372, 665
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	3 cut(s)	385, 530, 626
TaqI	TCGA	5 cut(s)	21, 53, 140, 561, 696
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	221, 390
Tru1I	TTAA	2 cut(s)	129, 642
Tru9I	TTAA	2 cut(s)	129, 642
TscAI	CASTG	2 cut(s)	727, 736
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	2 cut(s)	285, 707
Tsp45I	GTSAC	1 cut(s)	538
TspGWI	ACGGA	2 cut(s)	588, 672
TspRI	CASTG	2 cut(s)	727, 736
Tth111I	GACNNNGTC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.