FvH4_6g45370

allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002259
Physical Location & Seq
Reverse (-)
34833898 .. 34835032
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45370.t1

Sequence Viewer

Length: 555 bp
ATGGCTTGCTCAAGCTCCCCAAGACCCACAAAAGTTCAAGAGTTCCATGTGTATGAGATCAACGAACGAGACCGTTCGAGCCCGGCTTACCTCAGTCTAAGCCAGAAACCTGCACATTCGCTCGGAGATCTCGTTCCCTTCACTAATAAAATATACACCGGAGACCTTGAGAAACGCTTGGGAATTACAGCAGGACTTTGCATTTTGATAGAAAGCAAGCCGGAAAAGAAAGGCGACCGATATGAGGCCATGTACAGCTTCTATTTCGGGGACTATGGTCACATTTCGGTTCAAGGACCGTACTTGACTTACGAGGACACCAGCCTGGCCGTGACTGGTGGTTCGGGGATATTTGAAGGAGTGTATGGACATGTGAAGCTTCACCAGATTGTGTTTCCGTTCAAGATCTTGTACACTTTTTACTTGAAGGGGATCGAGGACTTGCCTGAGGAGCTTACAGCTGGGAAGCTTGTGGAACCAAGCCCTAGTGTTCAGCCCAGCCCTGCTGCCAAGGCTTGTGAGCCCCAAGCTACTGTCTCTAATTTCACAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

185

Amino Acids

20.34

Weight (kDa)

5.73

Isoelectric Point (pI)

57.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 8 - 182 4.2e-95 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 327
AfaI GTAC 3 cut(s) 254, 302, 413
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 5 cut(s) 38, 293, 356, 403, 427
AjnI CCWGG 1 cut(s) 324
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 7 cut(s) 15, 258, 379, 454, 461, 469, 530
AluI AGCT 7 cut(s) 15, 258, 379, 454, 461, 469, 530
Alw26I GTCTC 3 cut(s) 63, 156, 541
AlwI GGATC 1 cut(s) 440
AoxI GGCC 2 cut(s) 246, 327
ApeKI GCWGC 1 cut(s) 506
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 447
BanII GRGCYC 2 cut(s) 83, 525
BbvI GCAGC 1 cut(s) 493
BceAI ACGGC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 326
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 63, 156, 541
BfaI CTAG 2 cut(s) 486, 553
BfuAI ACCTGC 1 cut(s) 118
BglII AGATCT 2 cut(s) 127, 405
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme1390I CCNGG 2 cut(s) 83, 326
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 83, 326
BoxI GACNNNNGTC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 83
BsaI GGTCTC 2 cut(s) 63, 156
BsaJI CCNNGG 1 cut(s) 510
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 106, 438
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 493
BseYI CCCAGC 2 cut(s) 461, 497
BsgI GTGCAG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 248, 329
BsiEI CGRYCG 1 cut(s) 238
BsiSI CCGG 3 cut(s) 83, 159, 221
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 63, 156, 541
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 248, 329
Bso31I GGTCTC 2 cut(s) 63, 156
Bsp1286I GDGCHC 2 cut(s) 83, 525
Bsp1407I TGTACA 2 cut(s) 252, 411
Bsp143I GATC 4 cut(s) 57, 127, 405, 432
BspANI GGCC 2 cut(s) 248, 329
BspCNI CTCAG 2 cut(s) 105, 439
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 440
BspTNI GGTCTC 2 cut(s) 63, 156
BsrGI TGTACA 2 cut(s) 252, 411
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 4 cut(s) 57, 127, 405, 432
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 74, 300, 535
BstAUI TGTACA 2 cut(s) 252, 411
BstC8I GCNNGC 2 cut(s) 7, 218
BstDEI CTNAG 3 cut(s) 92, 98, 447
BstKTI GATC 4 cut(s) 60, 130, 408, 435
BstMAI GTCTC 3 cut(s) 63, 156, 541
BstMBI GATC 4 cut(s) 57, 127, 405, 432
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 451, 512
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 374
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 81, 324
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 2 cut(s) 127, 405
BstYI RGATCY 2 cut(s) 127, 405
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 248, 329
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 7, 218
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 253, 301, 412
CviAII CATG 3 cut(s) 47, 250, 371
CviQI GTAC 3 cut(s) 253, 301, 412
DdeI CTNAG 3 cut(s) 92, 98, 447
DpnI GATC 4 cut(s) 59, 129, 407, 434
DpnII GATC 4 cut(s) 57, 127, 405, 432
EaeI YGGCCR 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 2 cut(s) 83, 525
Eco31I GGTCTC 2 cut(s) 63, 156
Eco47I GGWCC 1 cut(s) 296
Eco81I CCTNAGG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 2 cut(s) 83, 525
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 3 cut(s) 50, 253, 374
FaiI YATR 8 cut(s) 48, 54, 154, 243, 251, 276, 366, 372
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 46, 249, 370
Fnu4HI GCNGC 1 cut(s) 507
FriOI GRGCYC 2 cut(s) 83, 525
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 2 cut(s) 486, 553
GluI GCNGC 1 cut(s) 507
GsaI CCCAGC 2 cut(s) 465, 501
HaeIII GGCC 2 cut(s) 248, 329
HapII CCGG 3 cut(s) 83, 159, 221
Hin1II CATG 3 cut(s) 50, 253, 374
HindIII AAGCTT 2 cut(s) 377, 467
HpaII CCGG 3 cut(s) 83, 159, 221
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 38, 403
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 148, 350, 421
HpyCH4III ACNGT 3 cut(s) 74, 300, 535
HpyCH4V TGCA 2 cut(s) 113, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 451, 512
HpyF3I CTNAG 3 cut(s) 92, 98, 447
Hsp92II CATG 3 cut(s) 50, 253, 374
Kzo9I GATC 4 cut(s) 57, 127, 405, 432
LmnI GCTCC 2 cut(s) 20, 451
Lsp1109I GCAGC 1 cut(s) 493
MaeI CTAG 2 cut(s) 486, 553
MaeIII GTNAC 2 cut(s) 278, 331
MalI GATC 4 cut(s) 59, 129, 407, 434
MboI GATC 4 cut(s) 57, 127, 405, 432
MflI RGATCY 2 cut(s) 127, 405
MhlI GDGCHC 2 cut(s) 83, 525
MluCI AATT 2 cut(s) 183, 541
MnlI CCTC 5 cut(s) 101, 238, 307, 430, 442
MslI CAYNNNNRTG 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 3 cut(s) 83, 159, 221
MspR9I CCNGG 2 cut(s) 83, 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 451, 512
NciI CCSGG 1 cut(s) 83
NdeII GATC 4 cut(s) 57, 127, 405, 432
NlaIII CATG 3 cut(s) 50, 253, 374
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 2 cut(s) 278, 331
NspI RCATGY 1 cut(s) 374
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 1 cut(s) 508
PscI ACATGT 1 cut(s) 370
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 2 cut(s) 461, 497
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 2 cut(s) 127, 405
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 254, 302, 413
RsaNI GTAC 3 cut(s) 253, 301, 412
RseI CAYNNNNRTG 1 cut(s) 51
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 4 cut(s) 57, 127, 405, 432
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 83, 326
SduI GDGCHC 2 cut(s) 83, 525
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 10, 167
SmoI CTYRAG 2 cut(s) 10, 167
Sse9I AATT 2 cut(s) 183, 541
SspMI CTAG 2 cut(s) 486, 553
StyD4I CCNGG 2 cut(s) 81, 324
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 3 cut(s) 74, 300, 535
TaqI TCGA 2 cut(s) 77, 435
TaqII GACCGA 1 cut(s) 252
TasI AATT 2 cut(s) 183, 541
TatI WGTACW 2 cut(s) 252, 411
TseFI GTSAC 2 cut(s) 278, 331
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 2 cut(s) 278, 331
TspGWI ACGGA 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 296
XceI RCATGY 1 cut(s) 374
XspI CTAG 2 cut(s) 486, 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.