Rroxscaffold_3G00232430

Allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002259
Physical Location & Seq
Reverse (-)
18071061 .. 18072629
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232430.1

Sequence Viewer

Length: 732 bp
ATGGCTTCCTCTAGCTCTGCTTTTAGAACCATATCTTCCTCCTCCATGAAACTAGCCAACCCAAAATCACTGACTCACTCCCTAACCAACTCACTTCTACCCTTCAAGCTCCGAAACCCACCACCATCATCATCTCTGAAGCTGAACTCAAGCTTTTCACTGCCCCAAAGATCATTCACTTGCAAAAGCCAGGTCACCCCATCATCGGAGTCTGAAAGATCCACCAAAGTTCAGGAACTTAATGTGTATGAGATGAATGAGAGGGATCGTGGAAGCCCTGCTGTTCTGAAATTGAGTCAAAAAACTGTCAACTCCCTCGGCGATCTCTTGTACACTGGGGACCTGCAAAAACGACTTGGAATAACTGCTGGAATATGCATTCTGATTGAAAACAAACCAGAAAAGAAAGGTGATCGTTATGAGGCCATCTACAGCTTCTACTTTGGGGACTATGGTCACATTGCGGTGCAGGGACCCTATTTAACCTACGAGGACACGTGTCTTGCCGTGACTGGGGGGTCTGGAATCTTCGAGGGTGCTTACGGTCAGGTGAAGCTGCAGCAGCTTATTTTCCCCATCAAGCTTTTCTATACATTTTACCTTAAGGGCATTAAGGAGGACCTTCCCAATGAGCTTCTTGGAAAACCAGTGGAGCCCAACCCAGGTGTTGAGCCTAGCGCAGCTGCCAAGGCATGTGAGCCTGATGCCACCATTGCGAATTTCACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

243

Amino Acids

26.58

Weight (kDa)

8.55

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 73 - 241 6.5e-87 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 351
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 213, 273
AcsI RAATTY 1 cut(s) 718
AcuI CTGAAG 1 cut(s) 158
AcvI CACGTG 1 cut(s) 498
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 3 cut(s) 205, 513, 662
AflII CTTAAG 1 cut(s) 602
AflIII ACRYGT 2 cut(s) 495, 497
AgsI TTSAA 2 cut(s) 106, 389
AjnI CCWGG 2 cut(s) 189, 661
AlwI GGATC 2 cut(s) 213, 273
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 5 cut(s) 556, 559, 562, 680, 683
ApoI RAATTY 1 cut(s) 718
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 340, 473, 619
AsuHPI GGTGA 3 cut(s) 187, 422, 562
AvaII GGWCC 3 cut(s) 340, 473, 619
BanII GRGCYC 1 cut(s) 657
BbrPI CACGTG 1 cut(s) 498
BbvI GCAGC 5 cut(s) 543, 571, 574, 670, 692
BccI CCATC 4 cut(s) 133, 208, 434, 584
BceAI ACGGC 1 cut(s) 491
BciT130I CCWGG 2 cut(s) 191, 663
BfaI CTAG 3 cut(s) 12, 53, 675
BfmI CTRYAG 2 cut(s) 430, 557
BfrI CTTAAG 1 cut(s) 602
BfuAI ACCTGC 1 cut(s) 351
BisI GCNGC 5 cut(s) 557, 560, 563, 681, 684
BlsI GCNGC 5 cut(s) 558, 561, 564, 682, 685
Bme1390I CCNGG 2 cut(s) 191, 663
Bme18I GGWCC 3 cut(s) 340, 473, 619
BmgT120I GGNCC 3 cut(s) 340, 473, 619
BmiI GGNNCC 4 cut(s) 341, 474, 475, 654
BmrFI CCNGG 2 cut(s) 191, 663
BmrI ACTGGG 2 cut(s) 345, 522
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 2 cut(s) 345, 522
BoxI GACNNNNGTC 2 cut(s) 453, 498
BpuEI CTTGAG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 316, 661, 687
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 513, 662
Bse1I ACTGG 3 cut(s) 340, 517, 647
Bse3DI GCAATG 2 cut(s) 459, 711
BseBI CCWGG 2 cut(s) 191, 663
BseDI CCNNGG 3 cut(s) 316, 661, 687
BseLI CCNNNNNNNGG 3 cut(s) 205, 513, 662
BseMI GCAATG 2 cut(s) 459, 711
BseNI ACTGG 3 cut(s) 340, 517, 647
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 5 cut(s) 543, 571, 574, 670, 692
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 1 cut(s) 425
BslFI GGGAC 3 cut(s) 353, 461, 486
BslI CCNNNNNNNGG 3 cut(s) 205, 513, 662
BsmFI GGGAC 3 cut(s) 353, 461, 486
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 657
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 5 cut(s) 170, 218, 265, 322, 412
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 425
BspLI GGNNCC 4 cut(s) 341, 474, 475, 654
BspMAI CTGCAG 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 2 cut(s) 213, 273
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 2 cut(s) 459, 711
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 3 cut(s) 340, 517, 647
BssECI CCNNGG 3 cut(s) 316, 661, 687
BssMI GATC 5 cut(s) 170, 218, 265, 322, 412
BssT1I CCWWGG 1 cut(s) 687
Bst2UI CCWGG 2 cut(s) 191, 663
Bst4CI ACNGT 2 cut(s) 307, 545
BstAFI CTTAAG 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 498
BstEII GGTNACC 1 cut(s) 193
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 5 cut(s) 173, 221, 268, 325, 415
BstMBI GATC 5 cut(s) 170, 218, 265, 322, 412
BstMWI GCNNNNNNNGC 3 cut(s) 562, 689, 713
BstNI CCWGG 2 cut(s) 191, 663
BstNSI RCATGY 1 cut(s) 696
BstPAI GACNNNNGTC 2 cut(s) 453, 498
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 189, 661
BstSFI CTRYAG 2 cut(s) 430, 557
BstV1I GCAGC 5 cut(s) 543, 571, 574, 670, 692
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 4 cut(s) 68, 158, 333, 654
BveI ACCTGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 340, 473, 619
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 46, 693
CviQI GTAC 1 cut(s) 331
DpnI GATC 5 cut(s) 172, 220, 267, 324, 414
DpnII GATC 5 cut(s) 170, 218, 265, 322, 412
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
Eco130I CCWWGG 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 657
Eco47I GGWCC 3 cut(s) 340, 473, 619
Eco57I CTGAAG 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 193
EcoO109I RGGNCCY 3 cut(s) 340, 473, 619
EcoO65I GGTNACC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 189, 661
EcoT14I CCWWGG 1 cut(s) 687
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 687
FaeI CATG 2 cut(s) 49, 696
FaiI YATR 8 cut(s) 32, 47, 249, 376, 420, 453, 591, 694
FaqI GGGAC 3 cut(s) 353, 461, 486
FatI CATG 2 cut(s) 45, 692
Fnu4HI GCNGC 5 cut(s) 557, 560, 563, 681, 684
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 5 cut(s) 557, 560, 563, 681, 684
FspBI CTAG 3 cut(s) 12, 53, 675
GlaI GCGC 1 cut(s) 679
GluI GCNGC 5 cut(s) 557, 560, 563, 681, 684
HaeIII GGCC 1 cut(s) 425
HhaI GCGC 1 cut(s) 680
Hin1II CATG 2 cut(s) 49, 696
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 151, 581
HinfI GANTC 4 cut(s) 73, 209, 295, 525
HphI GGTGA 3 cut(s) 187, 422, 562
Hpy166II GTNNAC 2 cut(s) 310, 333
Hpy188I TCNGA 6 cut(s) 113, 138, 208, 214, 288, 384
Hpy188III TCNNGA 2 cut(s) 233, 522
Hpy8I GTNNAC 2 cut(s) 310, 333
HpyAV CCTTC 2 cut(s) 112, 632
HpyCH4III ACNGT 2 cut(s) 307, 545
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 183, 346, 378, 469, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 562, 689, 713
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 2 cut(s) 49, 696
HspAI GCGC 1 cut(s) 678
KflI GGGWCCC 1 cut(s) 473
Kzo9I GATC 5 cut(s) 170, 218, 265, 322, 412
LmnI GCTCC 2 cut(s) 114, 652
Lsp1109I GCAGC 5 cut(s) 543, 571, 574, 670, 692
LweI GCATC 1 cut(s) 694
MaeI CTAG 3 cut(s) 12, 53, 675
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 3 cut(s) 193, 455, 508
MalI GATC 5 cut(s) 172, 220, 267, 324, 414
MboI GATC 5 cut(s) 170, 218, 265, 322, 412
MboII GAAGA 2 cut(s) 27, 520
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 2 cut(s) 290, 718
MlyI GAGTC 3 cut(s) 67, 218, 304
MnlI CCTC 9 cut(s) 19, 49, 52, 255, 326, 415, 484, 526, 610
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 4 cut(s) 240, 482, 603, 612
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 602
MspR9I CCNGG 2 cut(s) 191, 663
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 2 cut(s) 191, 663
MwoI GCNNNNNNNGC 3 cut(s) 562, 689, 713
NdeII GATC 5 cut(s) 170, 218, 265, 322, 412
NlaIII CATG 2 cut(s) 49, 696
NlaIV GGNNCC 4 cut(s) 341, 474, 475, 654
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 3 cut(s) 193, 455, 508
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 696
PctI GAATGC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 525
PkrI GCNGC 5 cut(s) 558, 561, 564, 682, 685
PleI GAGTC 3 cut(s) 67, 217, 303
PmaCI CACGTG 1 cut(s) 498
PmlI CACGTG 1 cut(s) 498
PpsI GAGTC 3 cut(s) 67, 217, 303
Ppu21I YACGTR 1 cut(s) 498
PpuMI RGGWCCY 3 cut(s) 340, 473, 619
PshAI GACNNNNGTC 2 cut(s) 453, 498
Psp5II RGGWCCY 3 cut(s) 340, 473, 619
Psp6I CCWGG 2 cut(s) 189, 661
PspCI CACGTG 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 189, 661
PspN4I GGNNCC 4 cut(s) 341, 474, 475, 654
PspPI GGNCC 3 cut(s) 340, 473, 619
PspPPI RGGWCCY 3 cut(s) 340, 473, 619
PstI CTGCAG 1 cut(s) 561
PsuI RGATCY 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 4 cut(s) 240, 482, 603, 612
SatI GCNGC 5 cut(s) 557, 560, 563, 681, 684
Sau3AI GATC 5 cut(s) 170, 218, 265, 322, 412
Sau96I GGNCC 3 cut(s) 340, 473, 619
SchI GAGTC 3 cut(s) 67, 218, 304
ScrFI CCNGG 2 cut(s) 191, 663
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 2 cut(s) 430, 557
SinI GGWCC 3 cut(s) 340, 473, 619
SmiMI CAYNNNNRTG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 148, 602
SmoI CTYRAG 2 cut(s) 148, 602
Sse9I AATT 2 cut(s) 290, 718
SsiI CCGC 1 cut(s) 464
SspMI CTAG 3 cut(s) 12, 53, 675
StyD4I CCNGG 2 cut(s) 189, 661
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 2 cut(s) 307, 545
TaiI ACGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 531
TasI AATT 2 cut(s) 290, 718
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 4 cut(s) 240, 482, 603, 612
Tru9I TTAA 4 cut(s) 240, 482, 603, 612
TscAI CASTG 4 cut(s) 75, 165, 340, 654
TseFI GTSAC 3 cut(s) 193, 455, 508
TseI GCWGC 5 cut(s) 556, 559, 562, 680, 683
Tsp45I GTSAC 3 cut(s) 193, 455, 508
TspDTI ATGAA 2 cut(s) 62, 269
TspRI CASTG 4 cut(s) 75, 165, 340, 654
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 3 cut(s) 340, 473, 619
XapI RAATTY 1 cut(s) 718
XceI RCATGY 1 cut(s) 696
XspI CTAG 3 cut(s) 12, 53, 675
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.