Rorug07G0240200

Allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002259
Physical Location & Seq
Reverse (-)
22113962 .. 22114195
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0240200.1

Sequence Viewer

Length: 234 bp
ATGACTCCCTGCTTTCGAAGTCCCTTTCATGATTTCGTCCAAAAGGGTATTTTGGAGTCTGTTGGAGAGAGCAAGAAGAAGCCATTTGTGATTCTATTATCATACTTGAACCAACCTTCATTTATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCCGTGGGCGGTAGCGCAATTCCTTGCAGTGAATTTAACTTGCAGCTCAAGTTTTTGACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

77

Amino Acids

8.71

Weight (kDa)

5.0

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 68 2.1e-10 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AcsI RAATTY 2 cut(s) 152, 200
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 143, 214
AluI AGCT 2 cut(s) 143, 214
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 152, 200
AspLEI GCGC 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 223
BclI TGATCA 1 cut(s) 163
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 223
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 185
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 82, 143, 214
CviKI_1 RGCY 3 cut(s) 82, 143, 214
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 165
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 30, 103, 125, 162
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 212
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 212
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 32
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 4 cut(s) 4, 56, 91, 136
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 195, 211
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 32
HspAI GCGC 1 cut(s) 183
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 223
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 88, 158, 161
MluCI AATT 3 cut(s) 152, 186, 200
MlyI GAGTC 2 cut(s) 65, 145
MmeI TCCRAC 1 cut(s) 43
MseI TTAA 1 cut(s) 204
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 32
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 2 cut(s) 64, 144
PpsI GAGTC 2 cut(s) 64, 144
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 2 cut(s) 65, 145
SetI ASST 3 cut(s) 118, 145, 216
SfuI TTCGAA 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 152, 186, 200
SsiI CCGC 1 cut(s) 177
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 152, 186, 200
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 17, 108
TspRI CASTG 1 cut(s) 202
XapI RAATTY 2 cut(s) 152, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.