FvH4_5g31510

Allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002259
Physical Location & Seq
Reverse (-)
22482901 .. 22485397
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31510.t1

Sequence Viewer

Length: 750 bp
ATGGCTTCCTCTAGCTCTGCTCTCAGAACTATCCCTTCCTCTTCCATGAAACTAGCCAACCCAAAATCACTCACTCACTCCCCAACAAACTCACTCCTACCCTTCAAGCTCCGAAACCCACCACCATCATCATCTCTGAAACTGAACTCAATCTTTTCACTGCCCCAAAGATCATTCACTTGCAAAAGCCAGAGCAGCCCCTCATCGGAGACTGAACGATCCACCAAAGTTCAGGAACTTAATGTGTATGAGATCAATGAGAGGGATCGTGGGAGCCCTGCTTTTCTGAAATTGAGTCAAAAACCTGTCAACTCCCTCGGCGATCTCGTCCCCTTCAGTAACAAATTGTACACTGGGGACCTGCAAAAGCGAATTGGAATAACTGCTGGAATATGTGTTCTGATTGAAAACAAACCAGAAAAGAAAGGTGATCGCTATGAGGCGATCTACAGCTTCTACTTTGGGGACTATGGGCACATTGCGGTTCAGGGGTCCTATCTAACCTACGAGGACACTTATCTTGCTGTTACTGGGGGGTCTGGAGTCTTCGAGGGTGCTTACGGCCAGGTGAAGCTGCAGCAGCTTATTTTCCCCTTCAAGCTCTTCTACACATTTTACCTTAAGGGCATTAAGGAGGACCTTCCCAATGAGCTTCTTGGAAAGCCAGTGGAGCCCCACCCCGGTGTTGAGCCTAGCCCAGCTGCCAAGGCCTGTGAACCTCATGCCACCATTGCCAATTTCACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

250

Amino Acids

27.38

Weight (kDa)

8.96

Isoelectric Point (pI)

55.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 73 - 247 5.9e-98 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 213, 273
AcoI YGGCCR 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 319
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 205, 680
AflII CTTAAG 1 cut(s) 620
AgsI TTSAA 3 cut(s) 106, 407, 598
AjnI CCWGG 1 cut(s) 564
AleI CACNNNNGTG 1 cut(s) 681
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 8 cut(s) 15, 109, 453, 574, 583, 601, 652, 701
AluI AGCT 8 cut(s) 15, 109, 453, 574, 583, 601, 652, 701
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 213, 273
AoxI GGCC 2 cut(s) 562, 708
ApeKI GCWGC 5 cut(s) 195, 574, 577, 580, 701
AspS9I GGNCC 3 cut(s) 358, 492, 637
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 3 cut(s) 440, 580, 733
AvaII GGWCC 3 cut(s) 358, 492, 637
BaeGI GKGCMC 1 cut(s) 477
BanII GRGCYC 2 cut(s) 278, 675
BbsI GAAGAC 1 cut(s) 538
BbvI GCAGC 5 cut(s) 207, 561, 589, 592, 688
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 577
BciT130I CCWGG 1 cut(s) 566
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 3 cut(s) 12, 53, 693
BfmI CTRYAG 2 cut(s) 448, 575
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 5 cut(s) 196, 575, 578, 581, 702
BlsI GCNGC 5 cut(s) 197, 576, 579, 582, 703
Bme1390I CCNGG 2 cut(s) 566, 681
Bme18I GGWCC 3 cut(s) 358, 492, 637
BmgT120I GGNCC 3 cut(s) 358, 492, 637
BmiI GGNNCC 4 cut(s) 275, 359, 493, 672
BmrFI CCNGG 2 cut(s) 566, 681
BmrI ACTGGG 2 cut(s) 363, 540
BmuI ACTGGG 2 cut(s) 363, 540
BpiI GAAGAC 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 316, 679, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 680
Bse1I ACTGG 3 cut(s) 358, 535, 665
Bse3DI GCAATG 2 cut(s) 477, 729
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 3 cut(s) 316, 679, 705
BseLI CCNNNNNNNGG 2 cut(s) 205, 680
BseMI GCAATG 2 cut(s) 477, 729
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 3 cut(s) 358, 535, 665
BseSI GKGCMC 1 cut(s) 477
BseXI GCAGC 5 cut(s) 207, 561, 589, 592, 688
BseYI CCCAGC 1 cut(s) 697
BshFI GGCC 2 cut(s) 564, 710
BsiSI CCGG 1 cut(s) 681
BslFI GGGAC 3 cut(s) 314, 371, 479
BslI CCNNNNNNNGG 2 cut(s) 205, 680
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 3 cut(s) 314, 371, 479
BsnI GGCC 2 cut(s) 564, 710
Bsp1286I GDGCHC 3 cut(s) 278, 477, 675
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
BspACI CCGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 564, 710
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 4 cut(s) 275, 359, 493, 672
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 2 cut(s) 213, 273
BspQI GCTCTTC 1 cut(s) 608
BspTI CTTAAG 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 477, 729
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 358, 535, 665
BssECI CCNNGG 3 cut(s) 316, 679, 705
BssMI GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 1 cut(s) 566
Bst6I CTCTTC 2 cut(s) 46, 608
BstAFI CTTAAG 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 7 cut(s) 173, 221, 255, 268, 325, 433, 447
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
BstMWI GCNNNNNNNGC 5 cut(s) 195, 580, 670, 707, 731
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 564, 679
BstSFI CTRYAG 2 cut(s) 448, 575
BstSLI GKGCMC 1 cut(s) 477
BstV1I GCAGC 5 cut(s) 207, 561, 589, 592, 688
BstV2I GAAGAC 1 cut(s) 538
BsuRI GGCC 2 cut(s) 564, 710
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 3 cut(s) 158, 351, 672
BveI ACCTGC 1 cut(s) 369
Cfr13I GGNCC 3 cut(s) 358, 492, 637
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 46, 722
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 23
DpnI GATC 7 cut(s) 172, 220, 254, 267, 324, 432, 446
DpnII GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 46, 608
EarI CTCTTC 2 cut(s) 46, 608
Eco130I CCWWGG 1 cut(s) 705
Eco147I AGGCCT 1 cut(s) 710
Eco24I GRGCYC 2 cut(s) 278, 675
Eco47I GGWCC 3 cut(s) 358, 492, 637
Eco57I CTGAAG 1 cut(s) 319
EcoO109I RGGNCCY 3 cut(s) 358, 492, 637
EcoRII CCWGG 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 2 cut(s) 278, 675
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 2 cut(s) 49, 725
FaiI YATR 6 cut(s) 47, 249, 394, 438, 471, 723
FaqI GGGAC 3 cut(s) 314, 371, 479
FatI CATG 2 cut(s) 45, 721
Fnu4HI GCNGC 5 cut(s) 196, 575, 578, 581, 702
FriOI GRGCYC 2 cut(s) 278, 675
Fsp4HI GCNGC 5 cut(s) 196, 575, 578, 581, 702
FspBI CTAG 3 cut(s) 12, 53, 693
GluI GCNGC 5 cut(s) 196, 575, 578, 581, 702
GsaI CCCAGC 1 cut(s) 701
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 2 cut(s) 564, 710
HapII CCGG 1 cut(s) 681
Hin1II CATG 2 cut(s) 49, 725
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 295, 543
HpaII CCGG 1 cut(s) 681
HphI GGTGA 3 cut(s) 440, 580, 733
Hpy166II GTNNAC 3 cut(s) 310, 351, 716
Hpy188I TCNGA 6 cut(s) 26, 113, 138, 208, 288, 402
Hpy188III TCNNGA 2 cut(s) 233, 540
Hpy8I GTNNAC 3 cut(s) 310, 351, 716
HpyAV CCTTC 5 cut(s) 45, 112, 343, 604, 650
HpyCH4V TGCA 3 cut(s) 183, 364, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 580, 670, 707, 731
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 2 cut(s) 49, 725
Kzo9I GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
LguI GCTCTTC 1 cut(s) 608
LmnI GCTCC 3 cut(s) 114, 273, 670
Lsp1109I GCAGC 5 cut(s) 207, 561, 589, 592, 688
MaeI CTAG 3 cut(s) 12, 53, 693
MaeIII GTNAC 2 cut(s) 338, 526
MalI GATC 7 cut(s) 172, 220, 254, 267, 324, 432, 446
MboI GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
MboII GAAGA 3 cut(s) 33, 538, 595
MhlI GDGCHC 3 cut(s) 278, 477, 675
MluCI AATT 4 cut(s) 290, 344, 372, 736
MlyI GAGTC 2 cut(s) 304, 552
MseI TTAA 3 cut(s) 240, 621, 630
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 1 cut(s) 701
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 566, 681
MvaI CCWGG 1 cut(s) 566
MwoI GCNNNNNNNGC 5 cut(s) 195, 580, 670, 707, 731
NciI CCSGG 1 cut(s) 681
NdeII GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
NlaIII CATG 2 cut(s) 49, 725
NlaIV GGNNCC 4 cut(s) 275, 359, 493, 672
NmeAIII GCCGAG 1 cut(s) 297
OliI CACNNNNGTG 1 cut(s) 681
PceI AGGCCT 1 cut(s) 710
PciSI GCTCTTC 1 cut(s) 608
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PkrI GCNGC 5 cut(s) 197, 576, 579, 582, 703
PleI GAGTC 2 cut(s) 303, 551
PpsI GAGTC 2 cut(s) 303, 551
PpuMI RGGWCCY 3 cut(s) 358, 492, 637
Psp5II RGGWCCY 3 cut(s) 358, 492, 637
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 697
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 4 cut(s) 275, 359, 493, 672
PspPI GGNCC 3 cut(s) 358, 492, 637
PspPPI RGGWCCY 3 cut(s) 358, 492, 637
PstI CTGCAG 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 608
SaqAI TTAA 3 cut(s) 240, 621, 630
SatI GCNGC 5 cut(s) 196, 575, 578, 581, 702
Sau3AI GATC 7 cut(s) 170, 218, 252, 265, 322, 430, 444
Sau96I GGNCC 3 cut(s) 358, 492, 637
SchI GAGTC 2 cut(s) 304, 552
ScrFI CCNGG 2 cut(s) 566, 681
SduI GDGCHC 3 cut(s) 278, 477, 675
SfcI CTRYAG 2 cut(s) 448, 575
SinI GGWCC 3 cut(s) 358, 492, 637
SmiMI CAYNNNNRTG 1 cut(s) 681
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 4 cut(s) 290, 344, 372, 736
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 1 cut(s) 482
SspMI CTAG 3 cut(s) 12, 53, 693
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 564, 679
StyI CCWWGG 1 cut(s) 705
TaqI TCGA 1 cut(s) 549
TasI AATT 4 cut(s) 290, 344, 372, 736
TatI WGTACW 1 cut(s) 348
Tru1I TTAA 3 cut(s) 240, 621, 630
Tru9I TTAA 3 cut(s) 240, 621, 630
TscAI CASTG 3 cut(s) 165, 358, 672
TseI GCWGC 5 cut(s) 195, 574, 577, 580, 701
TspDTI ATGAA 1 cut(s) 62
TspRI CASTG 3 cut(s) 165, 358, 672
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 358, 492, 637
XspI CTAG 3 cut(s) 12, 53, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.