Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002259

Physical Location & Seq

Genomic Coordinates Reverse (-)

51290298 .. 51291137

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG352300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGTCTGCAAGTTCTCTGAAAGCCATTTCTTCTCTGTATCTCTCCAATCCAATCAAGTCTGCTTCACCTTCTCAAACCCAAAGATTGTTGGGTTTCAATCTCTCACACTCCTTCCCTACCCTCAAGTCCACACCAACCCACCAAACCTTCTCAAACTCGAAGAACTTCACCACCGAAGCCTTCTTCGGCCAGAAGCAGAAGACTGCAGAGCCCTCTTCAAGACCCACAAAAGTTCAAGAGCTAAATGTGTATGAGATGAATGAGCGAGACAGAGGCAGCCCTGCATACTTGAGATTGAGCAAGAAAGAAGTCAACTCACTCGGAGACCTAGTCCCATTCAGCAACAAGATCTACTCCGGCGACTTGGAAAAGAGGCTGGGGATCACAGCAGGGTTATGTGTGCTGATCCAAAACGTGCCGGAGAAGAAAGGGGACCGGTACGAGGCAATCTACAGCTTCTACTTCGGGGACTATGGCCATATTTCAGTTCAAGGAGCCTATTTGACCTACGAGGACACCTACTTGGCTGTGACTGGTGGATCTGGTATCTTTGAGGGTGTGTATGGACAGGTGAAGCTGAAGCAGATTGTGTTCCCCTTCAAGCTGTTTTACACGTTTTATTTGAAGGGTATTGCTGATTTGCCGGCTGAGCTTACCGGGAAGCCGGTAGCGCCGTCGCCTACCGTTGAGCCGTCTCCGGCGGCCAAGGCCACAGAGCCTCAAGCAACTGTTAAGAACTTCACCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009694 GO:0009695 GO:0009975 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046423 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 map00592 map01100 map01110

Pfam Domains

Protein Families

Allene_ox_cyc

Protein Analysis

250

Amino Acids

27.49

Weight (kDa)

9.17

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Allene_ox_cyc	PF06351	75 - 248	1.3e-100	Allene oxide cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13280
fragaria_vesca	FvH4_4g28021 FvH4_5g31510 FvH4_6g45370
malus_domestica	MD09G1084600.v1.1 MD13G1045900.v1.1 MD16G1047500.v1.1
prunus_persica	Prupe.1G306100_v2.0.a1 Prupe.3G239900_v2.0.a1
pyrus_communis	pycom13g04030 pycom16g04150
rosa_chinensis	RchiOBHm_Chr2g0163151 RchiOBHm_Chr4g0435751 RchiOBHm_Chr7g0226911
rosa_laevigata	RLG00000001683 RLG00000006562 RLG00000021133 RLG00000021378
rosa_multiflora	Rmu_co8225702.1_g000001 Rmu_co8452415.1_g000001 Rmu_sc0000051.1_g000021 Rmu_ssc0000104.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087500 Rroxscaffold_3G00232430 Rroxscaffold_5G00376940
rosa_rugosa	Rorug02G0501100 Rorug04G0289300 Rorug07G0240200
rosa_samantha	Rh2AG567300 Rh2BG579600 Rh2CG549500 Rh2DG589900 Rh4AG343600 Rh4BG352300 Rh4CG366800 Rh4DG346200 Rh7AG388300 Rh7BG374300 Rh7CG407600 Rh7DG386400
rosa_wichuraiana	Rw2G046980 Rw4G030000 Rw7G032570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	392, 403, 550
AcoI	YGGCCR	3 cut(s)	190, 478, 705
AcuI	CTGAAG	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	6 cut(s)	100, 222, 239, 494, 604, 628
AluBI	AGCT	5 cut(s)	244, 459, 580, 607, 655
AluI	AGCT	5 cut(s)	244, 459, 580, 607, 655
Alw26I	GTCTC	3 cut(s)	264, 321, 702
AlwI	GGATC	3 cut(s)	392, 403, 550
AoxI	GGCC	4 cut(s)	190, 478, 705, 711
ApeKI	GCWGC	1 cut(s)	279
AsiGI	ACCGGT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	676
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	4 cut(s)	60, 163, 586, 736
AvaII	GGWCC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	291
BceAI	ACGGC	2 cut(s)	661, 679
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	3 cut(s)	264, 321, 702
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	207, 454
BfoI	RGCGCY	1 cut(s)	677
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	2 cut(s)	280, 705
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	2 cut(s)	281, 706
Bme1390I	CCNGG	1 cut(s)	661
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	437, 499
BmrFI	CCNGG	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	3 cut(s)	110, 313, 708
BpuMI	CCSGG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	708
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	3 cut(s)	438, 646, 667
Bse1I	ACTGG	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	379
BshFI	GGCC	4 cut(s)	192, 480, 707, 713
BshTI	ACCGGT	1 cut(s)	438
BsiSI	CCGG	7 cut(s)	360, 422, 439, 647, 660, 668, 701
BslFI	GGGAC	3 cut(s)	320, 449, 485
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	3 cut(s)	264, 321, 702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	3 cut(s)	320, 449, 485
BsnI	GGCC	4 cut(s)	192, 480, 707, 713
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	351, 384, 408, 542
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	4 cut(s)	192, 480, 707, 713
BspCNI	CTCAG	1 cut(s)	643
BspLI	GGNNCC	2 cut(s)	437, 499
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	3 cut(s)	392, 403, 550
BspTNI	GGTCTC	1 cut(s)	321
BsrFI	RCCGGY	3 cut(s)	438, 646, 667
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	3 cut(s)	438, 646, 667
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	4 cut(s)	351, 384, 408, 542
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	708
Bst4CI	ACNGT	2 cut(s)	688, 733
Bst6I	CTCTTC	1 cut(s)	223
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	354, 387, 411, 545
BstMAI	GTCTC	3 cut(s)	264, 321, 702
BstMBI	GATC	4 cut(s)	351, 384, 408, 542
BstMWI	GCNNNNNNNGC	3 cut(s)	652, 673, 710
BstSCI	CCNGG	1 cut(s)	659
BstSFI	CTRYAG	2 cut(s)	207, 454
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	351, 542
BstYI	RGATCY	2 cut(s)	351, 542
BsuRI	GGCC	4 cut(s)	192, 480, 707, 713
Cac8I	GCNNGC	1 cut(s)	648
CfoI	GCGC	1 cut(s)	676
Cfr10I	RCCGGY	3 cut(s)	438, 646, 667
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	442
CspAI	ACCGGT	1 cut(s)	438
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	4 cut(s)	353, 386, 410, 544
DpnII	GATC	4 cut(s)	351, 384, 408, 542
EaeI	YGGCCR	3 cut(s)	190, 478, 705
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	702
FaiI	YATR	6 cut(s)	255, 289, 400, 477, 483, 567
FaqI	GGGAC	3 cut(s)	320, 449, 485
Fnu4HI	GCNGC	2 cut(s)	280, 705
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	280, 705
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	2 cut(s)	280, 705
GsaI	CCCAGC	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	4 cut(s)	192, 480, 707, 713
HapII	CCGG	7 cut(s)	360, 422, 439, 647, 660, 668, 701
HhaI	GCGC	1 cut(s)	676
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HpaII	CCGG	7 cut(s)	360, 422, 439, 647, 660, 668, 701
HphI	GGTGA	4 cut(s)	60, 163, 586, 736
Hpy166II	GTNNAC	2 cut(s)	132, 316
Hpy188I	TCNGA	2 cut(s)	21, 326
Hpy188III	TCNNGA	2 cut(s)	222, 239
Hpy8I	GTNNAC	2 cut(s)	132, 316
Hpy99I	CGWCG	1 cut(s)	682
HpyAV	CCTTC	6 cut(s)	81, 124, 160, 193, 610, 622
HpyCH4III	ACNGT	2 cut(s)	688, 733
HpyCH4IV	ACGT	2 cut(s)	417, 617
HpyCH4V	TGCA	3 cut(s)	11, 209, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	652, 673, 710
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	2 cut(s)	417, 617
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	646
KroNI	GCCGGC	1 cut(s)	648
Kzo9I	GATC	4 cut(s)	351, 384, 408, 542
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	2 cut(s)	417, 617
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	4 cut(s)	353, 386, 410, 544
MboI	GATC	4 cut(s)	351, 384, 408, 542
MboII	GAAGA	6 cut(s)	24, 175, 178, 210, 214, 439
MflI	RGATCY	2 cut(s)	351, 542
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	480
MluNI	TGGCCA	1 cut(s)	480
MnlI	CCTC	8 cut(s)	134, 226, 269, 369, 439, 508, 550, 732
Mox20I	TGGCCA	1 cut(s)	480
MroNI	GCCGGC	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	480
MseI	TTAA	1 cut(s)	735
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	7 cut(s)	360, 422, 439, 647, 660, 668, 701
MspR9I	CCNGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	3 cut(s)	652, 673, 710
NaeI	GCCGGC	1 cut(s)	648
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	351, 384, 408, 542
NgoMIV	GCCGGC	1 cut(s)	646
NlaIV	GGNNCC	2 cut(s)	437, 499
NmuCI	GTSAC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	332
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	281, 706
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	437, 499
PspPI	GGNCC	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	351, 542
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	2 cut(s)	280, 705
Sau3AI	GATC	4 cut(s)	351, 384, 408, 542
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	1 cut(s)	216
SfcI	CTRYAG	2 cut(s)	207, 454
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	125, 292, 723
SmoI	CTYRAG	3 cut(s)	125, 292, 723
SsiI	CCGC	1 cut(s)	704
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	659
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	688, 733
TaiI	ACGT	2 cut(s)	420, 620
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	1 cut(s)	707
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.