RLG00000001683

Allene oxide cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002259
Physical Location & Seq
Reverse (-)
19072040 .. 19073583
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001683

Sequence Viewer

Length: 750 bp
ATGGCTTCCTCTAGCTCTGCTTTTCGAACCATATCTTCCTCCTCCATGAAACTAGCCAACCCAAAATCACTGACTCACTCCCTAACCAACTCACTTCTACCCTTCAAGCTCCGAAACCCATCACCATCATCATCTCTGAAGCTGAACTCAAGCTTTTCACTGCCCCAAAGGTCATTCACTTGCAAAAGCCAGGTCACCCCATCATCGGAGTCTGAAAGATCCACCAAAGTTCAGGAACTTAATGTGTATGAGATGAATGAGAGGGATCGTGGAAGCCCTGCTGTTCTGAAATTGAGTCAAAAAACTGTCAACTCCCTCGGCGATCTCGTCCCCTTCAGTAACAAATTGTACACTGGGGACCTGCAAAAACGACTTGGAATAACTGCTGGAATATGCATTCTGATTGAAAACAAACCAGAAAAGAAAGGTGATCGCTATGAGGCCATCTACAGCTTCTACTTCGGAGACTATGGTCACATTGCGGTACAGGGACCCTATTTAACCTACGAGGACACGTATCTTGCCGTGACTGGGGGGTCTGGAATCTTTGAGGGTGCATACGGTCAGGTGAAGCTGCAGCAGCTTATTTTCCCCATCAAGCTTTTCTATACATTTTACCTTAAGGGCATTAAGGAGGACCTTCCCAATGAGCTTCTTGGAAAACCAGTGGAGCCCAACCCAGGTGTTGAGCCTAGCGCAGCTGCCAAGGCCTGTGAGCCTGACGCCACCATTGCTAATTTCACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009636 GO:0009637 GO:0009639 GO:0009642 GO:0009646 GO:0009648 GO:0009651 GO:0009682 GO:0009694 GO:0009695 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009864 GO:0009867 GO:0009908 GO:0009975 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010114 GO:0010218 GO:0010228 GO:0010243 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016853 GO:0016860 GO:0019752 GO:0022414 GO:0023052 GO:0031347 GO:0031349 GO:0031667 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033273 GO:0033274 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046394 GO:0046423 GO:0046677 GO:0048367 GO:0048511 GO:0048518 GO:0048573 GO:0048583 GO:0048584 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071365 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0072330 GO:0080134 GO:0080186 GO:0090567 GO:0097305 GO:0098542 GO:1900367 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko00592 ko01100 ko01110 map00592 map01100 map01110
Pfam Domains
Protein Families
Allene_ox_cyc

Protein Analysis

250

Amino Acids

27.3

Weight (kDa)

8.8

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Allene_ox_cyc PF06351 73 - 247 8.3e-97 Allene oxide cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 369
AciI CCGC 1 cut(s) 482
AclWI GGATC 2 cut(s) 213, 273
AcuI CTGAAG 2 cut(s) 158, 319
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 2 cut(s) 350, 486
AfiI CCNNNNNNNGG 3 cut(s) 205, 531, 680
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 2 cut(s) 106, 407
AjnI CCWGG 2 cut(s) 189, 679
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 2 cut(s) 213, 273
AoxI GGCC 2 cut(s) 441, 708
ApeKI GCWGC 5 cut(s) 574, 577, 580, 698, 701
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 3 cut(s) 358, 491, 637
AsuHPI GGTGA 4 cut(s) 114, 187, 440, 580
AsuII TTCGAA 1 cut(s) 25
AvaII GGWCC 3 cut(s) 358, 491, 637
BanII GRGCYC 1 cut(s) 675
BbvI GCAGC 5 cut(s) 561, 589, 592, 688, 710
BccI CCATC 5 cut(s) 127, 133, 208, 452, 602
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 2 cut(s) 191, 681
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 3 cut(s) 12, 53, 693
BfmI CTRYAG 2 cut(s) 448, 575
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 1 cut(s) 369
BisI GCNGC 5 cut(s) 575, 578, 581, 699, 702
BlsI GCNGC 5 cut(s) 576, 579, 582, 700, 703
Bme1390I CCNGG 2 cut(s) 191, 681
Bme18I GGWCC 3 cut(s) 358, 491, 637
BmgT120I GGNCC 3 cut(s) 358, 491, 637
BmiI GGNNCC 4 cut(s) 359, 492, 493, 672
BmrFI CCNGG 2 cut(s) 191, 681
BmrI ACTGGG 2 cut(s) 363, 540
BmuI ACTGGG 2 cut(s) 363, 540
BoxI GACNNNNGTC 1 cut(s) 471
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 723
BsaJI CCNNGG 3 cut(s) 316, 679, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 531, 680
Bse1I ACTGG 3 cut(s) 358, 535, 665
Bse3DI GCAATG 2 cut(s) 477, 729
BseBI CCWGG 2 cut(s) 191, 681
BseDI CCNNGG 3 cut(s) 316, 679, 705
BseLI CCNNNNNNNGG 3 cut(s) 205, 531, 680
BseMI GCAATG 2 cut(s) 477, 729
BseNI ACTGG 3 cut(s) 358, 535, 665
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 5 cut(s) 561, 589, 592, 688, 710
BshFI GGCC 2 cut(s) 443, 710
BslFI GGGAC 3 cut(s) 314, 371, 504
BslI CCNNNNNNNGG 3 cut(s) 205, 531, 680
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 3 cut(s) 314, 371, 504
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 443, 710
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 4 cut(s) 218, 265, 322, 430
BspACI CCGC 1 cut(s) 482
BspANI GGCC 2 cut(s) 443, 710
BspLI GGNNCC 4 cut(s) 359, 492, 493, 672
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 2 cut(s) 213, 273
BspT104I TTCGAA 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 477, 729
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 358, 535, 665
BssECI CCNNGG 3 cut(s) 316, 679, 705
BssMI GATC 4 cut(s) 218, 265, 322, 430
BssNI GRCGYC 1 cut(s) 723
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 191, 681
Bst4CI ACNGT 2 cut(s) 307, 563
BstACI GRCGYC 1 cut(s) 723
BstAFI CTTAAG 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 348
BstBAI YACGTR 1 cut(s) 516
BstBI TTCGAA 1 cut(s) 25
BstEII GGTNACC 1 cut(s) 193
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 4 cut(s) 221, 268, 325, 433
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 4 cut(s) 218, 265, 322, 430
BstMWI GCNNNNNNNGC 3 cut(s) 580, 707, 731
BstNI CCWGG 2 cut(s) 191, 681
BstPAI GACNNNNGTC 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 189, 679
BstSFI CTRYAG 2 cut(s) 448, 575
BstV1I GCAGC 5 cut(s) 561, 589, 592, 688, 710
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 443, 710
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 4 cut(s) 68, 158, 351, 672
BveI ACCTGC 1 cut(s) 369
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 3 cut(s) 358, 491, 637
CseI GACGC 1 cut(s) 731
Csp6I GTAC 2 cut(s) 349, 485
CviAII CATG 1 cut(s) 46
CviQI GTAC 2 cut(s) 349, 485
DpnI GATC 4 cut(s) 220, 267, 324, 432
DpnII GATC 4 cut(s) 218, 265, 322, 430
DrdI GACNNNNNNGTC 1 cut(s) 535
DseDI GACNNNNNNGTC 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 705
Eco147I AGGCCT 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 3 cut(s) 358, 491, 637
Eco57I CTGAAG 2 cut(s) 158, 319
Eco91I GGTNACC 1 cut(s) 193
EcoO109I RGGNCCY 3 cut(s) 358, 491, 637
EcoO65I GGTNACC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 189, 679
EcoT14I CCWWGG 1 cut(s) 705
EcoT22I ATGCAT 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 1 cut(s) 49
FaiI YATR 8 cut(s) 32, 47, 249, 394, 438, 471, 559, 609
FaqI GGGAC 3 cut(s) 314, 371, 504
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 5 cut(s) 575, 578, 581, 699, 702
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 5 cut(s) 575, 578, 581, 699, 702
FspBI CTAG 3 cut(s) 12, 53, 693
GlaI GCGC 1 cut(s) 697
GluI GCNGC 5 cut(s) 575, 578, 581, 699, 702
HaeIII GGCC 2 cut(s) 443, 710
HgaI GACGC 1 cut(s) 731
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 1 cut(s) 49
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 151, 599
HinfI GANTC 4 cut(s) 73, 209, 295, 543
HphI GGTGA 4 cut(s) 114, 187, 440, 580
Hpy166II GTNNAC 2 cut(s) 310, 351
Hpy188I TCNGA 7 cut(s) 113, 138, 208, 214, 288, 402, 464
Hpy188III TCNNGA 2 cut(s) 233, 540
Hpy8I GTNNAC 2 cut(s) 310, 351
HpyAV CCTTC 3 cut(s) 112, 343, 650
HpyCH4III ACNGT 2 cut(s) 307, 563
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 5 cut(s) 183, 364, 396, 557, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 707, 731
HpySE526I ACGT 1 cut(s) 515
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 1 cut(s) 49
HspAI GCGC 1 cut(s) 696
KflI GGGWCCC 1 cut(s) 491
Kzo9I GATC 4 cut(s) 218, 265, 322, 430
LmnI GCTCC 2 cut(s) 114, 670
Lsp1109I GCAGC 5 cut(s) 561, 589, 592, 688, 710
MaeI CTAG 3 cut(s) 12, 53, 693
MaeII ACGT 1 cut(s) 515
MaeIII GTNAC 4 cut(s) 193, 338, 473, 526
MalI GATC 4 cut(s) 220, 267, 324, 432
MboI GATC 4 cut(s) 218, 265, 322, 430
MboII GAAGA 1 cut(s) 27
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 3 cut(s) 290, 344, 736
MlyI GAGTC 3 cut(s) 67, 218, 304
MnlI CCTC 9 cut(s) 19, 49, 52, 255, 326, 433, 502, 544, 628
Mph1103I ATGCAT 1 cut(s) 398
MseI TTAA 4 cut(s) 240, 500, 621, 630
MspA1I CMGCKG 1 cut(s) 701
MspCI CTTAAG 1 cut(s) 620
MspR9I CCNGG 2 cut(s) 191, 681
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 2 cut(s) 191, 681
MwoI GCNNNNNNNGC 3 cut(s) 580, 707, 731
NdeII GATC 4 cut(s) 218, 265, 322, 430
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 4 cut(s) 359, 492, 493, 672
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 3 cut(s) 193, 473, 526
NsiI ATGCAT 1 cut(s) 398
NspV TTCGAA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 710
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 543
PkrI GCNGC 5 cut(s) 576, 579, 582, 700, 703
PleI GAGTC 3 cut(s) 67, 217, 303
PpsI GAGTC 3 cut(s) 67, 217, 303
Ppu21I YACGTR 1 cut(s) 516
PpuMI RGGWCCY 3 cut(s) 358, 491, 637
PshAI GACNNNNGTC 1 cut(s) 471
Psp5II RGGWCCY 3 cut(s) 358, 491, 637
Psp6I CCWGG 2 cut(s) 189, 679
PspEI GGTNACC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 189, 679
PspN4I GGNNCC 4 cut(s) 359, 492, 493, 672
PspPI GGNCC 3 cut(s) 358, 491, 637
PspPPI RGGWCCY 3 cut(s) 358, 491, 637
PstI CTGCAG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 2 cut(s) 350, 486
RsaNI GTAC 2 cut(s) 349, 485
SaqAI TTAA 4 cut(s) 240, 500, 621, 630
SatI GCNGC 5 cut(s) 575, 578, 581, 699, 702
Sau3AI GATC 4 cut(s) 218, 265, 322, 430
Sau96I GGNCC 3 cut(s) 358, 491, 637
SchI GAGTC 3 cut(s) 67, 218, 304
ScrFI CCNGG 2 cut(s) 191, 681
SduI GDGCHC 1 cut(s) 675
SfcI CTRYAG 2 cut(s) 448, 575
SfuI TTCGAA 1 cut(s) 25
SinI GGWCC 3 cut(s) 358, 491, 637
SmlI CTYRAG 2 cut(s) 148, 620
SmoI CTYRAG 2 cut(s) 148, 620
Sse9I AATT 3 cut(s) 290, 344, 736
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 1 cut(s) 482
SspMI CTAG 3 cut(s) 12, 53, 693
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 189, 679
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 2 cut(s) 307, 563
TaiI ACGT 1 cut(s) 518
TaqI TCGA 1 cut(s) 25
TasI AATT 3 cut(s) 290, 344, 736
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 4 cut(s) 240, 500, 621, 630
Tru9I TTAA 4 cut(s) 240, 500, 621, 630
TscAI CASTG 4 cut(s) 75, 165, 358, 672
TseFI GTSAC 3 cut(s) 193, 473, 526
TseI GCWGC 5 cut(s) 574, 577, 580, 698, 701
Tsp45I GTSAC 3 cut(s) 193, 473, 526
TspDTI ATGAA 2 cut(s) 62, 269
TspRI CASTG 4 cut(s) 75, 165, 358, 672
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 358, 491, 637
XspI CTAG 3 cut(s) 12, 53, 693
Zsp2I ATGCAT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.