AT1G13810

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002455
Physical Location & Seq
Forward (+)
4733991 .. 4735453
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13810.1

Sequence Viewer

Length: 912 bp
ATGCTTCGTCGTGTCTTTTACAAGCGTGCACGTGATGATTTATCTTACTGTCATCGTCTGTTGCACATTCCGTATAACGAACCAGAGCCTGACTCAAAGGCAATTTCTGAAATCGTTGGTATAGTTTCAAAGAAAGAAGAAGCTGTAGTAGTTACGGAACCAACTCATCATTGGCGTAAGAATTGGGAAGATTTGAGAAAGAATAGGTTAACAGCTAGTAATTTCGCGCGTGCTATCGGATTTTCGCCTGACGGTAGACGAAATCTTTGGTTAGAGAAAATCGGGGCAGCGAAACCGTTTGCTGGAAACCGAGCTACGTTTTGGGACATTGAGAATGAGGTCGAAGCACTCGAGAGGTACAACGAGTTAACGGGAAATGAAATCCTCATACCTGAGTTTGTTGTTTATAAGAATGGTGAAAGCCCTGAAGAAAACTGGTTAGGAGCTTCTCCTGATGGAGTGATCAATGTAGTTAAGGACGGTGTTACTTCGTGTGGTGTGTTAGAAGTGAAATGCCCGTTTGATAACCGGGATAACTCGAAAGTTTATCCGTGGAAGAAGGTTCCTTATAATTGTGTTCCACAACTTCAGGGTTTAATGGAGATTGTGGATACAGATTGGTTGGATTTGTATTGTTGGACTCGCAATGGAAGCAGTCTCTTTAGAGTTTGGCGTGATACCGCGTTTTGGGAGGATATGAAACCGGCACTGTTTGATTTTTGGCAGAATCATGTTTTACCTGCAAGAGAGATATACAATAACTTTGATATAAAGGATCCTCAAGTGAAGCTGAGAGAGTTTAAACCGAAGCATTGGCATGAAGATTGCAAGAAGATTATGCGTGGAGCTGAGAGAATCAGCGCAAACGCAAACCGTTTGTTCTATGAGATCGATGGGAATCTTGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

303

Amino Acids

35.49

Weight (kDa)

6.05

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 61 - 202 1.9e-16 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 408, 570
Acc36I ACCTGC 1 cut(s) 748
AccI GTMKAC 2 cut(s) 256, 906
AccII CGCG 3 cut(s) 227, 229, 683
AciI CCGC 1 cut(s) 681
AclWI GGATC 2 cut(s) 770, 783
AcuI CTGAAG 2 cut(s) 447, 572
AcvI CACGTG 1 cut(s) 32
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 302, 687
AgsI TTSAA 1 cut(s) 129
AluBI AGCT 6 cut(s) 143, 215, 314, 446, 790, 848
AluI AGCT 6 cut(s) 143, 215, 314, 446, 790, 848
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 662
Alw44I GTGCAC 1 cut(s) 27
AlwI GGATC 2 cut(s) 770, 783
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 287
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspLEI GCGC 2 cut(s) 229, 863
AsuC2I CCSGG 1 cut(s) 530
AsuHPI GGTGA 1 cut(s) 428
AvaI CYCGRG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 775
BbrPI CACGTG 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 449, 887
BciVI GTATCC 1 cut(s) 604
BclI TGATCA 1 cut(s) 462
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 748
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 530
BmeT110I CYCGRG 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 159, 564, 777
BmrFI CCNGG 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpuEI CTTGAG 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 530
Bsa29I ATCGAT 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 1 cut(s) 551
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 687
Bse118I RCCGGY 1 cut(s) 703
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 652
Bse8I GATNNNNATC 1 cut(s) 897
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 1 cut(s) 551
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 2 cut(s) 302, 687
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 3 cut(s) 384, 782, 840
BseNI ACTGG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 31
BseXI GCAGC 1 cut(s) 299
Bsh1236I CGCG 3 cut(s) 227, 229, 683
BshVI ATCGAT 1 cut(s) 891
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 2 cut(s) 529, 704
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 302, 687
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 338
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 462, 775, 888
BspACI CCGC 1 cut(s) 681
BspCNI CTCAG 3 cut(s) 385, 783, 841
BspDI ATCGAT 1 cut(s) 891
BspFNI CGCG 3 cut(s) 227, 229, 683
BspLI GGNNCC 3 cut(s) 159, 564, 777
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 770, 783
BsrDI GCAATG 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 703
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 703
BssECI CCNNGG 1 cut(s) 551
BssMI GATC 3 cut(s) 462, 775, 888
Bst4CI ACNGT 6 cut(s) 50, 254, 297, 482, 711, 875
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 27, 231
BstDEI CTNAG 3 cut(s) 393, 791, 849
BstDSI CCRYGG 1 cut(s) 551
BstFNI CGCG 3 cut(s) 227, 229, 683
BstHHI GCGC 2 cut(s) 229, 863
BstKTI GATC 3 cut(s) 465, 778, 891
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 3 cut(s) 462, 775, 888
BstMWI GCNNNNNNNGC 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 3 cut(s) 227, 229, 683
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu15I ATCGAT 1 cut(s) 891
BsuI GTATCC 1 cut(s) 604
BsuTUI ATCGAT 1 cut(s) 891
BtgI CCRYGG 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 707
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 2 cut(s) 27, 231
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 2 cut(s) 229, 863
Cfr10I RCCGGY 1 cut(s) 703
ClaI ATCGAT 1 cut(s) 891
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 731, 818
CviJI RGCY 8 cut(s) 88, 143, 215, 314, 423, 446, 790, 848
CviKI_1 RGCY 8 cut(s) 88, 143, 215, 314, 423, 446, 790, 848
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 3 cut(s) 393, 791, 849
DpnI GATC 3 cut(s) 464, 777, 890
DpnII GATC 3 cut(s) 462, 775, 888
DraI TTTAAA 1 cut(s) 802
Eco57I CTGAAG 2 cut(s) 447, 572
Eco72I CACGTG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 350
FaeI CATG 2 cut(s) 734, 821
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 730, 817
FbaI TGATCA 1 cut(s) 462
FblI GTMKAC 2 cut(s) 256, 906
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 216
GlaI GCGC 2 cut(s) 228, 862
GluI GCNGC 1 cut(s) 288
HapII CCGG 2 cut(s) 529, 704
HhaI GCGC 2 cut(s) 229, 863
Hin1II CATG 2 cut(s) 734, 821
Hin6I GCGC 2 cut(s) 227, 861
HinP1I GCGC 2 cut(s) 227, 861
HincII GTYRAC 2 cut(s) 210, 369
HindII GTYRAC 2 cut(s) 210, 369
HinfI GANTC 5 cut(s) 92, 640, 727, 855, 898
HpaI GTTAAC 2 cut(s) 210, 369
HpaII CCGG 2 cut(s) 529, 704
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 5 cut(s) 29, 210, 257, 369, 907
Hpy188I TCNGA 2 cut(s) 109, 239
Hpy188III TCNNGA 2 cut(s) 352, 452
Hpy8I GTNNAC 5 cut(s) 29, 210, 257, 369, 907
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 553
HpyCH4III ACNGT 6 cut(s) 50, 254, 297, 482, 711, 875
HpyCH4IV ACGT 2 cut(s) 31, 317
HpyCH4V TGCA 4 cut(s) 29, 64, 743, 828
HpyF10VI GCNNNNNNNGC 1 cut(s) 651
HpyF3I CTNAG 3 cut(s) 393, 791, 849
HpySE526I ACGT 2 cut(s) 31, 317
Hsp92II CATG 2 cut(s) 734, 821
HspAI GCGC 2 cut(s) 227, 861
Ksp22I TGATCA 1 cut(s) 462
KspAI GTTAAC 2 cut(s) 210, 369
Kzo9I GATC 3 cut(s) 462, 775, 888
LmnI GCTCC 2 cut(s) 443, 845
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 31, 317
MaeIII GTNAC 2 cut(s) 151, 484
MalI GATC 3 cut(s) 464, 777, 890
MboI GATC 3 cut(s) 462, 775, 888
MboII GAAGA 6 cut(s) 149, 200, 440, 568, 833, 844
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 4 cut(s) 102, 181, 220, 571
MlyI GAGTC 2 cut(s) 86, 634
MmeI TCCRAC 2 cut(s) 603, 617
MnlI CCTC 5 cut(s) 331, 348, 395, 685, 789
MseI TTAA 5 cut(s) 209, 368, 474, 596, 801
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 2 cut(s) 529, 704
MspR9I CCNGG 1 cut(s) 530
MssI GTTTAAAC 1 cut(s) 802
MvnI CGCG 3 cut(s) 227, 229, 683
MwoI GCNNNNNNNGC 1 cut(s) 651
NciI CCSGG 1 cut(s) 530
NdeII GATC 3 cut(s) 462, 775, 888
NlaIII CATG 2 cut(s) 734, 821
NlaIV GGNNCC 3 cut(s) 159, 564, 777
PaeR7I CTCGAG 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PfeI GAWTC 3 cut(s) 727, 855, 898
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 2 cut(s) 86, 634
PmaCI CACGTG 1 cut(s) 32
PmeI GTTTAAAC 1 cut(s) 802
PmlI CACGTG 1 cut(s) 32
PpsI GAGTC 2 cut(s) 86, 634
Ppu21I YACGTR 1 cut(s) 32
PsiI TTATAA 2 cut(s) 408, 570
PspCI CACGTG 1 cut(s) 32
PspN4I GGNNCC 3 cut(s) 159, 564, 777
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 775
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 5 cut(s) 209, 368, 474, 596, 801
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 462, 775, 888
SchI GAGTC 2 cut(s) 86, 634
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 816
SmlI CTYRAG 2 cut(s) 350, 780
SmoI CTYRAG 2 cut(s) 350, 780
Sse9I AATT 4 cut(s) 102, 181, 220, 571
SsiI CCGC 1 cut(s) 681
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 6 cut(s) 50, 254, 297, 482, 711, 875
TaiI ACGT 2 cut(s) 34, 320
TaqI TCGA 4 cut(s) 342, 351, 539, 891
TasI AATT 4 cut(s) 102, 181, 220, 571
TfiI GAWTC 3 cut(s) 727, 855, 898
Tru1I TTAA 5 cut(s) 209, 368, 474, 596, 801
Tru9I TTAA 5 cut(s) 209, 368, 474, 596, 801
TscAI CASTG 1 cut(s) 714
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 393, 713, 834
TspGWI ACGGA 3 cut(s) 60, 170, 540
TspRI CASTG 1 cut(s) 714
VneI GTGCAC 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XhoI CTCGAG 1 cut(s) 350
XmiI GTMKAC 2 cut(s) 256, 906
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.