Rorug06G0109000

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002455
Physical Location & Seq
Forward (+)
14749742 .. 14751246
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0109000.1

Sequence Viewer

Length: 789 bp
ATGTCAGTGATCTGCTTCACAGCGTCAGCTTATGCCGGATTCTCGGAGGTGAGAGGAAAGCACCTGGAGTGTTCCAAGTTCTGGAAGAATAATAGCAATCAGTCCGATTCTCAAAAATCAAAGCAAATTAACATATCTAGTAGAAGAGGCATGCAGATTACTTATACTCCCGCATTTCTTGCTAGTCTCACATCCTTGGTGTTCTTTCCCCGTTACGGTGATATCAGATATCTATTGTTCTCTTCATGTCTAACTATTCATTTCCTCAAAAGACTTTTGGAGGTTCAATTTGTTCACAAGTACAGTGGAGGGATGGCACTTGATACTGCGATTTTTATCTGTCTCAGTTACTTCACGTCTACTGCCACCATGATCTACGCTCAGCACCTTAATATAACCCAAGGGCCGGAGCCACAAATTGATTTGAAGTACCCTGGAATTCTGTTGTTTCTACTTGGGATATCTGGCAATTTCTACCATCACTACCTACTTTCGCGAATGAGATCATCATCCTCTTCGTCTCCGTCGAACTCAAAAAGCAATGATGTTATGGATTATAAGATTCCAAGGGGTGGATTGTTTGAGCTAGTGGTATGCCCTCACTATCTTTTTGAAATCATAGGATTTGTAGGGTTCTCTTTTATTTCTCAGACCTTGTATGCATTCGCCTTCGCGGTCGGAACAGCATTCTATTTGACTGGTAGGAGCTATGCTACTAGGAGATGGTATCTTTCTAAGTTTAAACATTTTCCCCAAAATGTCAAGGCTCTCATTCCATATCTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

9.56

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Steroid_dh PF02544 142 - 262 7.8e-25 3-oxo-5-alpha-steroid 4-dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AccB7I CCANNNNNTGG 2 cut(s) 81, 572
AccI GTMKAC 1 cut(s) 359
AccII CGCG 2 cut(s) 496, 674
AciI CCGC 2 cut(s) 171, 674
AcsI RAATTY 1 cut(s) 438
AfaI GTAC 2 cut(s) 302, 431
AfiI CCNNNNNNNGG 4 cut(s) 81, 215, 406, 572
AgsI TTSAA 3 cut(s) 287, 427, 614
AjiI CACGTC 1 cut(s) 357
AjnI CCWGG 2 cut(s) 63, 433
AluBI AGCT 3 cut(s) 29, 586, 708
AluI AGCT 3 cut(s) 29, 586, 708
Alw26I GTCTC 3 cut(s) 191, 347, 525
AoxI GGCC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 404
AsuHPI GGTGA 2 cut(s) 61, 230
BccI CCATC 3 cut(s) 307, 486, 717
BciT130I CCWGG 2 cut(s) 65, 435
BcoDI GTCTC 3 cut(s) 191, 347, 525
BfaI CTAG 4 cut(s) 138, 183, 587, 717
BlpI GCTNAGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 65, 435
BmgBI CACGTC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 404
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 2 cut(s) 65, 435
BpmI CTGGAG 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 381
BsaBI GATNNNNATC 2 cut(s) 335, 508
BsaJI CCNNGG 4 cut(s) 195, 400, 433, 566
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 215, 406, 572
Bse1I ACTGG 1 cut(s) 703
Bse3DI GCAATG 1 cut(s) 547
Bse8I GATNNNNATC 2 cut(s) 335, 508
BseBI CCWGG 2 cut(s) 65, 435
BseDI CCNNGG 4 cut(s) 195, 400, 433, 566
BseGI GGATG 3 cut(s) 191, 318, 509
BseJI GATNNNNATC 2 cut(s) 335, 508
BseLI CCNNNNNNNGG 4 cut(s) 81, 215, 406, 572
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 358, 395, 662
BseNI ACTGG 1 cut(s) 703
Bsh1236I CGCG 2 cut(s) 496, 674
Bsh1285I CGRYCG 1 cut(s) 678
BshFI GGCC 1 cut(s) 406
BsiEI CGRYCG 1 cut(s) 678
BsiSI CCGG 2 cut(s) 36, 407
BslI CCNNNNNNNGG 4 cut(s) 81, 215, 406, 572
BsmAI GTCTC 3 cut(s) 191, 347, 525
BsmBI CGTCTC 1 cut(s) 525
BsmI GAATGC 2 cut(s) 662, 686
BsnI GGCC 1 cut(s) 406
Bsp143I GATC 3 cut(s) 9, 372, 503
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp68I TCGCGA 1 cut(s) 496
BspACI CCGC 2 cut(s) 171, 674
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 3 cut(s) 357, 394, 661
BspFNI CGCG 2 cut(s) 496, 674
BspLI GGNNCC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 1 cut(s) 703
BssECI CCNNGG 4 cut(s) 195, 400, 433, 566
BssMI GATC 3 cut(s) 9, 372, 503
BssT1I CCWWGG 3 cut(s) 195, 400, 566
Bst2UI CCWGG 2 cut(s) 65, 435
Bst4CI ACNGT 2 cut(s) 218, 305
Bst6I CTCTTC 3 cut(s) 139, 247, 520
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 4 cut(s) 344, 381, 648, 735
BstF5I GGATG 3 cut(s) 191, 318, 509
BstFNI CGCG 2 cut(s) 496, 674
BstKTI GATC 3 cut(s) 12, 375, 506
BstMAI GTCTC 3 cut(s) 191, 347, 525
BstMBI GATC 3 cut(s) 9, 372, 503
BstMCI CGRYCG 1 cut(s) 678
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 2 cut(s) 65, 435
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 63, 433
BstUI CGCG 2 cut(s) 496, 674
BsuRI GGCC 1 cut(s) 406
BtrI CACGTC 1 cut(s) 357
BtsCI GGATG 3 cut(s) 191, 318, 509
BtsIMutI CAGTG 2 cut(s) 12, 310
BtuMI TCGCGA 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 1 cut(s) 12
Csp6I GTAC 2 cut(s) 301, 430
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 151, 246, 370
CviJI RGCY 6 cut(s) 29, 406, 412, 586, 708, 767
CviKI_1 RGCY 6 cut(s) 29, 406, 412, 586, 708, 767
CviQI GTAC 2 cut(s) 301, 430
DdeI CTNAG 4 cut(s) 344, 381, 648, 735
DpnI GATC 3 cut(s) 11, 374, 505
DpnII GATC 3 cut(s) 9, 372, 503
DraI TTTAAA 1 cut(s) 742
Eam1104I CTCTTC 3 cut(s) 139, 247, 520
EarI CTCTTC 3 cut(s) 139, 247, 520
Eco130I CCWWGG 3 cut(s) 195, 400, 566
Eco32I GATATC 3 cut(s) 223, 230, 462
EcoRI GAATTC 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 63, 433
EcoRV GATATC 3 cut(s) 223, 230, 462
EcoT14I CCWWGG 3 cut(s) 195, 400, 566
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 3 cut(s) 195, 400, 566
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 3 cut(s) 154, 249, 373
FatI CATG 3 cut(s) 150, 245, 369
FauI CCCGC 1 cut(s) 178
FblI GTMKAC 1 cut(s) 359
FokI GGATG 3 cut(s) 178, 325, 496
FspBI CTAG 4 cut(s) 138, 183, 587, 717
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 1 cut(s) 406
HapII CCGG 2 cut(s) 36, 407
HgaI GACGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 154, 249, 373
HinfI GANTC 3 cut(s) 39, 107, 562
HpaII CCGG 2 cut(s) 36, 407
HphI GGTGA 2 cut(s) 61, 230
Hpy166II GTNNAC 2 cut(s) 295, 360
Hpy188I TCNGA 5 cut(s) 46, 106, 227, 651, 680
Hpy188III TCNNGA 2 cut(s) 82, 495
Hpy8I GTNNAC 2 cut(s) 295, 360
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 1 cut(s) 679
HpyCH4III ACNGT 2 cut(s) 218, 305
HpyCH4IV ACGT 1 cut(s) 356
HpyCH4V TGCA 2 cut(s) 154, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 4 cut(s) 344, 381, 648, 735
HpySE526I ACGT 1 cut(s) 356
Hsp92II CATG 3 cut(s) 154, 249, 373
Kzo9I GATC 3 cut(s) 9, 372, 503
LmnI GCTCC 2 cut(s) 409, 705
LpnPI CCDG 9 cut(s) 49, 50, 67, 77, 420, 420, 447, 450, 684
MaeI CTAG 4 cut(s) 138, 183, 587, 717
MaeII ACGT 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 212, 347
MalI GATC 3 cut(s) 11, 374, 505
MboI GATC 3 cut(s) 9, 372, 503
MboII GAAGA 4 cut(s) 97, 156, 234, 507
MluCI AATT 5 cut(s) 126, 287, 417, 438, 469
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 8 cut(s) 40, 47, 140, 274, 275, 302, 523, 609
Mph1103I ATGCAT 1 cut(s) 664
MseI TTAA 3 cut(s) 129, 390, 741
MspI CCGG 2 cut(s) 36, 407
MspR9I CCNGG 2 cut(s) 65, 435
MssI GTTTAAAC 1 cut(s) 742
Mva1269I GAATGC 2 cut(s) 662, 686
MvaI CCWGG 2 cut(s) 65, 435
MvnI CGCG 2 cut(s) 496, 674
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 9, 372, 503
NlaIII CATG 3 cut(s) 154, 249, 373
NlaIV GGNNCC 1 cut(s) 411
NruI TCGCGA 1 cut(s) 496
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PctI GAATGC 2 cut(s) 662, 686
PfeI GAWTC 3 cut(s) 39, 107, 562
PflMI CCANNNNNTGG 2 cut(s) 81, 572
PmeI GTTTAAAC 1 cut(s) 742
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 63, 433
PspGI CCWGG 2 cut(s) 63, 433
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 1 cut(s) 404
RruI TCGCGA 1 cut(s) 496
RsaI GTAC 2 cut(s) 302, 431
RsaNI GTAC 2 cut(s) 301, 430
SaqAI TTAA 3 cut(s) 129, 390, 741
Sau3AI GATC 3 cut(s) 9, 372, 503
Sau96I GGNCC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 65, 435
SphI GCATGC 1 cut(s) 154
Sse9I AATT 5 cut(s) 126, 287, 417, 438, 469
SsiI CCGC 2 cut(s) 171, 674
SspMI CTAG 4 cut(s) 138, 183, 587, 717
StyD4I CCNGG 2 cut(s) 63, 433
StyI CCWWGG 3 cut(s) 195, 400, 566
TaaI ACNGT 2 cut(s) 218, 305
TaiI ACGT 1 cut(s) 359
TaqI TCGA 1 cut(s) 527
TasI AATT 5 cut(s) 126, 287, 417, 438, 469
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 3 cut(s) 39, 107, 562
Tru1I TTAA 3 cut(s) 129, 390, 741
Tru9I TTAA 3 cut(s) 129, 390, 741
TscAI CASTG 2 cut(s) 12, 310
TspDTI ATGAA 2 cut(s) 234, 248
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 2 cut(s) 12, 310
Van91I CCANNNNNTGG 2 cut(s) 81, 572
XapI RAATTY 1 cut(s) 438
XceI RCATGY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 359
XspI CTAG 4 cut(s) 138, 183, 587, 717
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.