Rmu_sc0035337.1_g000001

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035337.1
OG0002455
Physical Location & Seq
Reverse (-)
573 .. 1103
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035337.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atgataacccaaaacaatgttttgcctcctcggttccaagtccatagcaaagctgattggctcgccgcttcaccggatgggatggtcgaattgccttccaattcgacaggagtactggaaatcaagtgcccatttttcgatggagagaagagccgggccttgccgtggttgctcattccggcgcactgtatcccccaggctcagggattgatggagattcttgacaaagagtggatgcatttctatgtttggacactgagtgggagtagcttgtttaagttgtacagggacagggagtattggggtgttttggaacaagctctctcggatttttggtggaaacatgttcaaccggcgagggagatttttagtaacagatggaaaacggtgaggagcacgcatctgctattgaaaccgttgaggccagcagaaacgcatgagatgattgatcatatagtttgtgaaagcagacgcattgtttgtaggtctgagttgttggtgcgtgaagtccatgccaaaatgcaatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

176

Amino Acids

20.68

Weight (kDa)

7.75

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 2 cut(s) 114, 284
AfiI CCNNNNNNNGG 2 cut(s) 165, 202
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 2 cut(s) 350, 412
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 3 cut(s) 53, 270, 320
AluI AGCT 3 cut(s) 53, 270, 320
Alw21I GWGCWC 1 cut(s) 398
AoxI GGCC 2 cut(s) 156, 422
ArsI GACNNNNNNTTYG 2 cut(s) 462, 494
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 63, 400
BaeGI GKGCMC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 398
BccI CCATC 5 cut(s) 71, 76, 134, 205, 372
BceAI ACGGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 197
BciVI GTATCC 1 cut(s) 200
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 200
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 155, 197
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 155, 197
BmsI GCATC 2 cut(s) 225, 409
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 29, 164, 195
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 202
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 3 cut(s) 29, 164, 195
BseGI GGATG 3 cut(s) 82, 87, 240
BseLI CCNNNNNNNGG 2 cut(s) 165, 202
BseMII CTCAG 3 cut(s) 215, 248, 480
BseNI ACTGG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 18, 406
BseSI GKGCMC 1 cut(s) 131
BshFI GGCC 2 cut(s) 158, 424
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 4 cut(s) 74, 154, 179, 353
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 165, 202
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 158, 424
Bsp1286I GDGCHC 2 cut(s) 131, 398
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 1 cut(s) 448
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 158, 424
BspCNI CTCAG 3 cut(s) 214, 249, 481
BspLI GGNNCC 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 29, 164, 195
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 188, 388, 417
Bst6I CTCTTC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 63, 398, 426
BstDEI CTNAG 3 cut(s) 201, 257, 489
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 82, 87, 240
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 451
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 153, 195
BstSLI GKGCMC 1 cut(s) 131
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 158, 424
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 3 cut(s) 82, 87, 240
BtsIMutI CAGTG 2 cut(s) 184, 254
Cac8I GCNNGC 3 cut(s) 63, 398, 426
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 156
CseI GACGC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 113, 283
CviAII CATG 3 cut(s) 344, 437, 512
CviJI RGCY 8 cut(s) 53, 61, 153, 158, 200, 270, 320, 424
CviKI_1 RGCY 8 cut(s) 53, 61, 153, 158, 200, 270, 320, 424
CviQI GTAC 2 cut(s) 113, 283
DdeI CTNAG 3 cut(s) 201, 257, 489
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DraIII CACNNNGTG 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 195
EcoT22I ATGCAT 1 cut(s) 240
FaeI CATG 3 cut(s) 347, 440, 515
FaiI YATR 7 cut(s) 45, 246, 345, 438, 453, 455, 513
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 343, 436, 511
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 89, 94, 247
Fsp4HI GCNGC 1 cut(s) 66
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 158, 424
HapII CCGG 4 cut(s) 74, 154, 179, 353
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 184
Hin1II CATG 3 cut(s) 347, 440, 515
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 217
HpaII CCGG 4 cut(s) 74, 154, 179, 353
HphI GGTGA 2 cut(s) 63, 400
Hpy188I TCNGA 2 cut(s) 328, 490
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 3 cut(s) 188, 388, 417
HpyCH4V TGCA 2 cut(s) 238, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 3 cut(s) 201, 257, 489
Hsp92II CATG 3 cut(s) 347, 440, 515
HspAI GCGC 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 448
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 1 cut(s) 393
LweI GCATC 2 cut(s) 225, 409
MaeIII GTNAC 1 cut(s) 371
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MboII GAAGA 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 131, 398
MluCI AATT 2 cut(s) 89, 100
MnlI CCTC 5 cut(s) 36, 39, 351, 384, 414
Mph1103I ATGCAT 1 cut(s) 240
MseI TTAA 1 cut(s) 276
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 4 cut(s) 74, 154, 179, 353
MspR9I CCNGG 2 cut(s) 155, 197
MvaI CCWGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 448
NlaIII CATG 3 cut(s) 347, 440, 515
NlaIV GGNNCC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 347
PciI ACATGT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 67
PscI ACATGT 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 2 cut(s) 114, 284
RsaNI GTAC 2 cut(s) 113, 283
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 1 cut(s) 156
ScaI AGTACT 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 155, 197
SduI GDGCHC 2 cut(s) 131, 398
SetI ASST 4 cut(s) 55, 272, 322, 488
SfaNI GCATC 2 cut(s) 225, 409
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 2 cut(s) 89, 100
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 153, 195
TaaI ACNGT 3 cut(s) 188, 388, 417
TaqI TCGA 3 cut(s) 87, 104, 138
TasI AATT 2 cut(s) 89, 100
TatI WGTACW 2 cut(s) 112, 282
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 191, 261
TspRI CASTG 2 cut(s) 191, 261
XceI RCATGY 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.