FvH4_2g20261

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002455
Physical Location & Seq
Reverse (-)
17036645 .. 17037526
882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20261.t1

Sequence Viewer

Length: 801 bp
ATGCTTGCTGCTATCCACCAAAACATCACCCGAACCCAGTTTCAGTTCTCTCGAAGTTACTCTGCTGCTTATGCAATCAGTCTCCAAAACACCTCCAAAAACTGGCAACAACTCAGAGAGGAAAAACTGACCGCAAGCACATTCGCCGCAGCTGTCGGGTTCTGGCCTCGCCAGAGAGTCCGGCTCTGGCGGGAGAAGATCGGAGCAGTTAAGCCCTTCTCCGGGAACCTATCTACCTCCTGGAGCAACATCAAGGAAGAAGAAGCTCTACATAGGTACAAGATGATAACCCAACACAATGTTTCTTCTGTTGGGTTCCGAGTCCACAGCAAAGCTGATTGGCTCGCAGCTTCAGCTGATGGGATGATAGACTCGAGTGGAGTATTGGAAATCAAGTGCCCATTTTTCGATGGGGAGAAGAGCAGGGCGTGGCCATGGCTGCGCATACCGGCGCAGTGTGTGCCCCAGGCGCAGGGGCTGATGGAGATTCTAGACAAGGAGTGGATGCATTTCTATGTGTGGACTTTGAATGGGAGCAGCTTGTTCAAGTTGTATAGGGACAGGGAGTATTGGGGTGTTTTGGAAGAGGCTCTTTCGGATTTTTGGTGGAAGCATGTGGTGCCGGGGAGGGAGGTTTATGGGAATAGGGAGAAGACGGTGAGGAGGACGCATTTGCTGTTGAAACCGTTCCGGCCGGCGGAGAGGCATGAGATGATTGAGCGTATAGTTTGTGAGAGTAGAAGGATTGTTTGTAGGTCTGAGTTGTTGGTGCGTGAAGTTCATGGCAGAATGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

267

Amino Acids

31.22

Weight (kDa)

9.66

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 34 - 162 4.5e-16 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 443
AccB1I GGYRCC 1 cut(s) 619
AccB7I CCANNNNNTGG 1 cut(s) 102
AciI CCGC 4 cut(s) 132, 147, 190, 698
AcoI YGGCCR 2 cut(s) 431, 692
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 5 cut(s) 102, 221, 222, 472, 697
AgsI TTSAA 3 cut(s) 529, 547, 682
AjnI CCWGG 2 cut(s) 239, 465
AluBI AGCT 6 cut(s) 152, 266, 335, 350, 356, 540
AluI AGCT 6 cut(s) 152, 266, 335, 350, 356, 540
Alw26I GTCTC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 478
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 3 cut(s) 164, 431, 692
ApeKI GCWGC 6 cut(s) 8, 65, 149, 347, 439, 537
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 3 cut(s) 444, 454, 472
AsuC2I CCSGG 2 cut(s) 223, 624
AsuHPI GGTGA 2 cut(s) 19, 670
AvaI CYCGRG 1 cut(s) 373
BaeGI GKGCMC 2 cut(s) 401, 465
BalI TGGCCA 1 cut(s) 433
BanI GGYRCC 1 cut(s) 619
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbsI GAAGAC 1 cut(s) 659
BbvI GCAGC 5 cut(s) 52, 161, 359, 426, 549
BccI CCATC 3 cut(s) 353, 404, 475
BciT130I CCWGG 2 cut(s) 241, 467
BcnI CCSGG 2 cut(s) 223, 624
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 491
BisI GCNGC 7 cut(s) 9, 66, 147, 150, 348, 440, 538
BlsI GCNGC 7 cut(s) 10, 67, 148, 151, 349, 441, 539
Bme1390I CCNGG 4 cut(s) 223, 241, 467, 624
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 227, 317, 621
BmrFI CCNGG 4 cut(s) 223, 241, 467, 624
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 1 cut(s) 495
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpmI CTGGAG 1 cut(s) 262
BpuMI CCSGG 2 cut(s) 223, 624
BsaJI CCNNGG 3 cut(s) 434, 465, 623
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 221, 222, 472, 697
Bse118I RCCGGY 2 cut(s) 448, 694
Bse1I ACTGG 2 cut(s) 37, 107
BseBI CCWGG 2 cut(s) 241, 467
BseDI CCNNGG 3 cut(s) 434, 465, 623
BseGI GGATG 2 cut(s) 369, 510
BseLI CCNNNNNNNGG 5 cut(s) 102, 221, 222, 472, 697
BseMII CTCAG 2 cut(s) 127, 750
BseNI ACTGG 2 cut(s) 37, 107
BseRI GAGGAG 1 cut(s) 676
BseSI GKGCMC 2 cut(s) 401, 465
BseX3I CGGCCG 1 cut(s) 692
BseXI GCAGC 5 cut(s) 52, 161, 359, 426, 549
Bsh1285I CGRYCG 1 cut(s) 695
BshFI GGCC 3 cut(s) 166, 433, 694
BshNI GGYRCC 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 695
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 6 cut(s) 181, 222, 449, 623, 691, 695
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 5 cut(s) 102, 221, 222, 472, 697
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 3 cut(s) 166, 433, 694
BsoBI CYCGRG 1 cut(s) 373
Bsp1286I GDGCHC 2 cut(s) 401, 465
Bsp143I GATC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 4 cut(s) 132, 147, 190, 698
BspANI GGCC 3 cut(s) 166, 433, 694
BspCNI CTCAG 2 cut(s) 126, 751
BspLI GGNNCC 3 cut(s) 227, 317, 621
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 619
BsrFI RCCGGY 2 cut(s) 448, 694
BsrI ACTGG 2 cut(s) 37, 107
BssAI RCCGGY 2 cut(s) 448, 694
BssECI CCNNGG 3 cut(s) 434, 465, 623
BssMI GATC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 241, 467
Bst4CI ACNGT 2 cut(s) 658, 687
Bst6I CTCTTC 2 cut(s) 413, 579
BstAPI GCANNNNNTGC 2 cut(s) 460, 619
BstC8I GCNNGC 4 cut(s) 6, 136, 345, 696
BstDEI CTNAG 2 cut(s) 113, 759
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 2 cut(s) 369, 510
BstHHI GCGC 3 cut(s) 444, 454, 472
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 1 cut(s) 198
BstMCI CGRYCG 1 cut(s) 695
BstMWI GCNNNNNNNGC 6 cut(s) 71, 353, 439, 460, 469, 619
BstNI CCWGG 2 cut(s) 241, 467
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 4 cut(s) 221, 239, 465, 622
BstSLI GKGCMC 2 cut(s) 401, 465
BstV1I GCAGC 5 cut(s) 52, 161, 359, 426, 549
BstV2I GAAGAC 1 cut(s) 659
BstZI CGGCCG 1 cut(s) 692
BsuRI GGCC 3 cut(s) 166, 433, 694
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 2 cut(s) 369, 510
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 461
Cac8I GCNNGC 4 cut(s) 6, 136, 345, 696
CaiI CAGNNNCTG 1 cut(s) 478
CfoI GCGC 3 cut(s) 444, 454, 472
Cfr10I RCCGGY 2 cut(s) 448, 694
CseI GACGC 1 cut(s) 676
Csp6I GTAC 1 cut(s) 277
CviAII CATG 4 cut(s) 435, 614, 707, 782
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 113, 759
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
EaeI YGGCCR 2 cut(s) 431, 692
EagI CGGCCG 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 413, 579
EarI CTCTTC 2 cut(s) 413, 579
EciI GGCGGA 1 cut(s) 713
EclXI CGGCCG 1 cut(s) 692
Eco130I CCWWGG 1 cut(s) 434
Eco52I CGGCCG 1 cut(s) 692
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 373
EcoRII CCWGG 2 cut(s) 239, 465
EcoT14I CCWWGG 1 cut(s) 434
EcoT22I ATGCAT 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 4 cut(s) 438, 617, 710, 785
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 1 cut(s) 572
FatI CATG 4 cut(s) 434, 613, 706, 781
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 7 cut(s) 9, 66, 147, 150, 348, 440, 538
FokI GGATG 2 cut(s) 376, 517
Fsp4HI GCNGC 7 cut(s) 9, 66, 147, 150, 348, 440, 538
FspBI CTAG 1 cut(s) 491
FspI TGCGCA 1 cut(s) 443
GlaI GCGC 3 cut(s) 443, 453, 471
GluI GCNGC 7 cut(s) 9, 66, 147, 150, 348, 440, 538
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 166, 433, 694
HapII CCGG 6 cut(s) 181, 222, 449, 623, 691, 695
HgaI GACGC 1 cut(s) 676
HhaI GCGC 3 cut(s) 444, 454, 472
Hin1II CATG 4 cut(s) 438, 617, 710, 785
Hin6I GCGC 3 cut(s) 442, 452, 470
HinP1I GCGC 3 cut(s) 442, 452, 470
HinfI GANTC 4 cut(s) 177, 321, 371, 487
HpaII CCGG 6 cut(s) 181, 222, 449, 623, 691, 695
HphI GGTGA 2 cut(s) 19, 670
Hpy166II GTNNAC 2 cut(s) 325, 522
Hpy188I TCNGA 5 cut(s) 116, 203, 320, 598, 760
Hpy188III TCNNGA 2 cut(s) 51, 491
Hpy8I GTNNAC 2 cut(s) 325, 522
HpyAV CCTTC 2 cut(s) 226, 735
HpyCH4III ACNGT 2 cut(s) 658, 687
HpyCH4V TGCA 3 cut(s) 74, 508, 793
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 353, 439, 460, 469, 619
HpyF3I CTNAG 2 cut(s) 113, 759
Hsp92II CATG 4 cut(s) 438, 617, 710, 785
HspAI GCGC 3 cut(s) 442, 452, 470
KroI GCCGGC 1 cut(s) 694
KroNI GCCGGC 1 cut(s) 696
Kzo9I GATC 1 cut(s) 198
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 3 cut(s) 203, 243, 534
Lsp1109I GCAGC 5 cut(s) 52, 161, 359, 426, 549
LweI GCATC 1 cut(s) 495
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 7 cut(s) 208, 269, 272, 297, 430, 596, 664
MhlI GDGCHC 2 cut(s) 401, 465
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 1 cut(s) 796
MluNI TGGCCA 1 cut(s) 433
MlyI GAGTC 3 cut(s) 186, 330, 365
Mox20I TGGCCA 1 cut(s) 433
Mph1103I ATGCAT 1 cut(s) 510
MroNI GCCGGC 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 433
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 433
MspA1I CMGCKG 2 cut(s) 152, 356
MspI CCGG 6 cut(s) 181, 222, 449, 623, 691, 695
MspR9I CCNGG 4 cut(s) 223, 241, 467, 624
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 2 cut(s) 241, 467
MwoI GCNNNNNNNGC 6 cut(s) 71, 353, 439, 460, 469, 619
NaeI GCCGGC 1 cut(s) 696
NciI CCSGG 2 cut(s) 223, 624
NcoI CCATGG 1 cut(s) 434
NdeII GATC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 694
NlaIII CATG 4 cut(s) 438, 617, 710, 785
NlaIV GGNNCC 3 cut(s) 227, 317, 621
NsbI TGCGCA 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 1 cut(s) 617
PaeR7I CTCGAG 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 795
PdiI GCCGGC 1 cut(s) 696
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 102
PfoI TCCNGGA 2 cut(s) 221, 239
PkrI GCNGC 7 cut(s) 10, 67, 148, 151, 349, 441, 539
PleI GAGTC 3 cut(s) 185, 329, 365
PpsI GAGTC 3 cut(s) 185, 329, 365
Psp6I CCWGG 2 cut(s) 239, 465
PspGI CCWGG 2 cut(s) 239, 465
PspN4I GGNNCC 3 cut(s) 227, 317, 621
PspXI VCTCGAGB 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 478
PvuII CAGCTG 2 cut(s) 152, 356
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 513
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 7 cut(s) 9, 66, 147, 150, 348, 440, 538
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 3 cut(s) 186, 330, 365
ScrFI CCNGG 4 cut(s) 223, 241, 467, 624
SduI GDGCHC 2 cut(s) 401, 465
SfaNI GCATC 1 cut(s) 495
Sfr274I CTCGAG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 1 cut(s) 796
SsiI CCGC 4 cut(s) 132, 147, 190, 698
SspMI CTAG 1 cut(s) 491
StyD4I CCNGG 4 cut(s) 221, 239, 465, 622
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 2 cut(s) 658, 687
TaqI TCGA 3 cut(s) 52, 374, 408
TasI AATT 1 cut(s) 796
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 461
TseI GCWGC 6 cut(s) 8, 65, 149, 347, 439, 537
TspDTI ATGAA 1 cut(s) 770
TspRI CASTG 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 102
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 373
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.