FvH4_2g14912

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002455
Physical Location & Seq
Forward (+)
13106173 .. 13111153
4981 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14912.t1

Sequence Viewer

Length: 834 bp
ATGCTAGGCACCCCAAGACAAATTCTCAGCTGTTCTAAGTACTTGCAGAGATTTTGTTCGTCTGAAAGTTATTCAGTTCTCAATTCAGCTGGTCTTCAGCACTGGTTCAAGAATTGGCAAGGACTCAGAAGACAGAAACTGACAGCAAGCTCTTTTGCTGCGGCTATGGGTTTTTCGAACTACCGAAGAGTGGGGCTTTGGTTAGAGAAAATTGGAGCAGTTGAGCCCTTTTCCGGTAACCTGGCTACCTGTTGGAATAATATTAAAGAAGAGGAAGCACTTGAAAGATACAAGTTGATCACAGGAAATTCAGTCTCATTTCCCGAATTTCAGGTCTATGGAAATGTAAATCCAGGAGATGACTGGCTAGCAGCTTCACCAGATGGGGTGGTTGATCAAATGGTGTATGGATTGCCTCTACGAGGAGTGCTGGAGATTAAATGCCCATTTTTTGATGGGGATATGAGCAAGGCTTTCCCTTGGACCCGAGTCCCTCTTTACTGTATTCCACAGGCTCAAGGTTTAATTGAAATAGTTGATAGGGAGTGGATGGATTTATATGTTTGGACTCCTAATGGAAGTAGCCTATTCAGGTTATACCGGGATGCAGCATACTGGGACATGATGAAGTATGCTCTCTCAGATTTTTGGTGGAATCATGTTCAGCCAGCAAGGGAGTTGTACAGTAAATCTCATGCTATGAATCCCCTCATTGAATCTTATAGGCCAAAACCCAAGCCTGAACATTGGAAATATATAATTTATGAAAGTAAGCGCATTGTTGAAAGCTCAGATTTATTGTGGCGTGAAATTCATGGCAAGCTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

278

Amino Acids

32.24

Weight (kDa)

8.18

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 38 - 151 2.9e-16 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 1 cut(s) 161
AcsI RAATTY 4 cut(s) 21, 307, 326, 810
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 2 cut(s) 41, 683
AfiI CCNNNNNNNGG 3 cut(s) 190, 233, 422
AgsI TTSAA 5 cut(s) 109, 284, 530, 716, 785
AjnI CCWGG 2 cut(s) 240, 352
AluBI AGCT 6 cut(s) 30, 89, 150, 374, 789, 823
AluI AGCT 6 cut(s) 30, 89, 150, 374, 789, 823
Alw26I GTCTC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 1 cut(s) 725
ApeKI GCWGC 3 cut(s) 158, 371, 608
ApoI RAATTY 4 cut(s) 21, 307, 326, 810
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 1 cut(s) 602
AsuHPI GGTGA 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 86, 136
BbvI GCAGC 3 cut(s) 145, 383, 620
BccI CCATC 3 cut(s) 377, 449, 544
BciT130I CCWGG 2 cut(s) 242, 354
BclI TGATCA 2 cut(s) 297, 394
BcnI CCSGG 1 cut(s) 602
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 2 cut(s) 5, 368
BisI GCNGC 4 cut(s) 159, 162, 372, 609
BlsI GCNGC 4 cut(s) 160, 163, 373, 610
BmcAI AGTACT 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 242, 354, 602
Bme18I GGWCC 1 cut(s) 483
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 10, 485
BmrFI CCNGG 3 cut(s) 242, 354, 602
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 1 cut(s) 595
BmtI GCTAGC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 625
BoxI GACNNNNGTC 1 cut(s) 488
BpiI GAAGAC 2 cut(s) 86, 136
BpmI CTGGAG 1 cut(s) 452
Bpu14I TTCGAA 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 479
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 233, 422
Bse1I ACTGG 3 cut(s) 107, 368, 620
BseBI CCWGG 2 cut(s) 242, 354
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 555, 610
BseLI CCNNNNNNNGG 3 cut(s) 190, 233, 422
BseMII CTCAG 4 cut(s) 40, 139, 654, 804
BseNI ACTGG 3 cut(s) 107, 368, 620
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 3 cut(s) 145, 383, 620
BshFI GGCC 1 cut(s) 727
BshNI GGYRCC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 2 cut(s) 234, 601
BslFI GGGAC 2 cut(s) 476, 632
BslI CCNNNNNNNGG 3 cut(s) 190, 233, 422
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 476, 632
BsnI GGCC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 486
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 2 cut(s) 297, 394
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 727
BspCNI CTCAG 4 cut(s) 39, 138, 653, 803
BspLI GGNNCC 2 cut(s) 10, 485
BspOI GCTAGC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 3 cut(s) 107, 368, 620
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 2 cut(s) 297, 394
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 2 cut(s) 242, 354
Bst4CI ACNGT 2 cut(s) 503, 686
Bst6I CTCTTC 2 cut(s) 181, 264
BstAUI TGTACA 1 cut(s) 681
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 4 cut(s) 148, 369, 669, 821
BstDEI CTNAG 5 cut(s) 26, 36, 125, 640, 790
BstEII GGTNACC 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 555, 610
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 2 cut(s) 300, 397
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 297, 394
BstNI CCWGG 2 cut(s) 242, 354
BstPAI GACNNNNGTC 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 240, 352, 600
BstV1I GCAGC 3 cut(s) 145, 383, 620
BstV2I GAAGAC 2 cut(s) 86, 136
BsuRI GGCC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 555, 610
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 4 cut(s) 148, 369, 669, 821
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 40, 682
CviAII CATG 4 cut(s) 622, 659, 695, 815
CviQI GTAC 2 cut(s) 40, 682
DdeI CTNAG 5 cut(s) 26, 36, 125, 640, 790
DpnI GATC 2 cut(s) 299, 396
DpnII GATC 2 cut(s) 297, 394
Eam1104I CTCTTC 2 cut(s) 181, 264
EarI CTCTTC 2 cut(s) 181, 264
Eco130I CCWWGG 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 240, 352
EcoT14I CCWWGG 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 4 cut(s) 625, 662, 698, 818
FaqI GGGAC 2 cut(s) 476, 632
FatI CATG 4 cut(s) 621, 658, 694, 814
FbaI TGATCA 2 cut(s) 297, 394
Fnu4HI GCNGC 4 cut(s) 159, 162, 372, 609
FokI GGATG 2 cut(s) 562, 617
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 4 cut(s) 159, 162, 372, 609
FspBI CTAG 2 cut(s) 5, 368
GlaI GCGC 1 cut(s) 776
GluI GCNGC 4 cut(s) 159, 162, 372, 609
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 727
HapII CCGG 2 cut(s) 234, 601
HhaI GCGC 1 cut(s) 777
Hin1II CATG 4 cut(s) 625, 662, 698, 818
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HinfI GANTC 6 cut(s) 123, 489, 568, 655, 703, 716
HpaII CCGG 2 cut(s) 234, 601
HphI GGTGA 1 cut(s) 369
Hpy188I TCNGA 4 cut(s) 64, 128, 643, 793
Hpy188III TCNNGA 2 cut(s) 109, 323
HpyCH4III ACNGT 2 cut(s) 503, 686
HpyCH4V TGCA 2 cut(s) 46, 608
HpyF3I CTNAG 5 cut(s) 26, 36, 125, 640, 790
Hsp92II CATG 4 cut(s) 625, 662, 698, 818
HspAI GCGC 1 cut(s) 775
Ksp22I TGATCA 2 cut(s) 297, 394
Kzo9I GATC 2 cut(s) 297, 394
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 145, 383, 620
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 5, 368
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 299, 396
MboI GATC 2 cut(s) 297, 394
MboII GAAGA 4 cut(s) 86, 141, 198, 281
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 9 cut(s) 21, 82, 112, 210, 307, 326, 525, 759, 810
MlyI GAGTC 3 cut(s) 117, 498, 562
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 5 cut(s) 265, 416, 426, 504, 719
MseI TTAA 3 cut(s) 264, 438, 524
MspA1I CMGCKG 2 cut(s) 30, 89
MspI CCGG 2 cut(s) 234, 601
MspR9I CCNGG 3 cut(s) 242, 354, 602
MvaI CCWGG 2 cut(s) 242, 354
NciI CCSGG 1 cut(s) 602
NdeII GATC 2 cut(s) 297, 394
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 4 cut(s) 625, 662, 698, 818
NlaIV GGNNCC 2 cut(s) 10, 485
NspV TTCGAA 1 cut(s) 176
PfeI GAWTC 3 cut(s) 655, 703, 716
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 4 cut(s) 160, 163, 373, 610
PleI GAGTC 3 cut(s) 117, 497, 562
PpsI GAGTC 3 cut(s) 117, 497, 562
PshAI GACNNNNGTC 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 240, 352
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 2 cut(s) 240, 352
PspN4I GGNNCC 2 cut(s) 10, 485
PspPI GGNCC 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 139
PvuII CAGCTG 2 cut(s) 30, 89
RsaI GTAC 2 cut(s) 41, 683
RsaNI GTAC 2 cut(s) 40, 682
SaqAI TTAA 3 cut(s) 264, 438, 524
SatI GCNGC 4 cut(s) 159, 162, 372, 609
Sau3AI GATC 2 cut(s) 297, 394
Sau96I GGNCC 1 cut(s) 483
ScaI AGTACT 1 cut(s) 41
SchI GAGTC 3 cut(s) 117, 498, 562
ScrFI CCNGG 3 cut(s) 242, 354, 602
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 595
SfuI TTCGAA 1 cut(s) 176
SinI GGWCC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 516
SmoI CTYRAG 1 cut(s) 516
Sse9I AATT 9 cut(s) 21, 82, 112, 210, 307, 326, 525, 759, 810
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 262
SspMI CTAG 2 cut(s) 5, 368
StyD4I CCNGG 3 cut(s) 240, 352, 600
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 2 cut(s) 503, 686
TaqI TCGA 1 cut(s) 176
TasI AATT 9 cut(s) 21, 82, 112, 210, 307, 326, 525, 759, 810
TatI WGTACW 2 cut(s) 39, 681
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 655, 703, 716
Tru1I TTAA 3 cut(s) 264, 438, 524
Tru9I TTAA 3 cut(s) 264, 438, 524
TscAI CASTG 1 cut(s) 107
TseI GCWGC 3 cut(s) 158, 371, 608
TspDTI ATGAA 4 cut(s) 641, 716, 780, 803
TspRI CASTG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 4 cut(s) 21, 307, 326, 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 2 cut(s) 5, 368
ZrmI AGTACT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.