Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035338.1

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Reverse (-)

893 .. 1185

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035338.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 293 bp

ttggagctgttaagccgttttccggtaacctgtctacctcctggagtaacatcaaagaagaagaagctgtccaaagatacaagatgattacccaaaacaatgttttgcctcctcggttccaagtccatagcaaagctgattggctggcagcttcaccggatgggatagtcgaatcgccttccaattcgacaggagtactggaaatcaagtgcccatttttcgacggagaaagagccgggccttgccgtggttgcgcattccggtgcactgtatcccccaggctcagggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

96

Amino Acids

10.56

Weight (kDa)

8.48

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	255
AccI	GTMKAC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	22, 247, 284
AjnI	CCWGG	2 cut(s)	40, 277
AluBI	AGCT	4 cut(s)	7, 67, 136, 151
AluI	AGCT	4 cut(s)	7, 67, 136, 151
Alw21I	GWGCWC	1 cut(s)	268
Alw44I	GTGCAC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	2 cut(s)	214, 268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	42, 279
BciVI	GTATCC	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	3 cut(s)	42, 237, 279
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	3 cut(s)	42, 237, 279
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	112, 246, 277
BsaWI	WCCGGW	3 cut(s)	22, 156, 260
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 247, 284
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	42, 279
BseDI	CCNNGG	3 cut(s)	112, 246, 277
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	22, 247, 284
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	2 cut(s)	214, 268
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	4 cut(s)	23, 157, 236, 261
BslI	CCNNNNNNNGG	3 cut(s)	22, 247, 284
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	214, 268
BspANI	GGCC	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	112, 246, 277
Bst2UI	CCWGG	2 cut(s)	42, 279
Bst4CI	ACNGT	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	283
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	2 cut(s)	42, 279
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	40, 235, 277
BstSLI	GKGCMC	2 cut(s)	214, 268
BstV1I	GCAGC	1 cut(s)	160
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	9 cut(s)	7, 15, 67, 136, 144, 151, 235, 240, 282
CviKI_1	RGCY	9 cut(s)	7, 15, 67, 136, 144, 151, 235, 240, 282
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	283
Eco91I	GGTNACC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	40, 277
FaiI	YATR	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	149
FspI	TGCGCA	1 cut(s)	255
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	4 cut(s)	23, 157, 236, 261
HhaI	GCGC	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	4 cut(s)	23, 157, 236, 261
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	35, 266
Hpy8I	GTNNAC	2 cut(s)	35, 266
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	25, 46
MboII	GAAGA	2 cut(s)	70, 73
MhlI	GDGCHC	2 cut(s)	214, 268
MluCI	AATT	1 cut(s)	183
MnlI	CCTC	3 cut(s)	48, 119, 122
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	4 cut(s)	23, 157, 236, 261
MspR9I	CCNGG	3 cut(s)	42, 237, 279
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	42, 279
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	237
NlaIV	GGNNCC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	172
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	40, 277
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	40, 277
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	238
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	238
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	3 cut(s)	42, 237, 279
SduI	GDGCHC	2 cut(s)	214, 268
SetI	ASST	6 cut(s)	9, 32, 40, 69, 138, 153
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	183
StyD4I	CCNGG	3 cut(s)	40, 235, 277
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	3 cut(s)	170, 187, 221
TasI	AATT	1 cut(s)	183
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	1 cut(s)	148
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	273
VneI	GTGCAC	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.