Rw6G025040

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002455
Physical Location & Seq
Reverse (-)
48249697 .. 48250885
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025040.1

Sequence Viewer

Length: 834 bp
ATGCTTGCTGCCATCCACAAACACATCATCCGCACCCAATTTCAGTGCTCTCGAAGTTACTCTGCTGCTTATGCAATCAGTCTTCAGAACAGCTCCAAAAATTGGCAACAGCTCAGAGAAGAGAAACTGACGGCGAGCACATTCGCCGCGGCTGTCGGCTTCTGGCCTCGCCAGCGGGTCAAGCTCTGGCGAGAGAAGATTGGAGCTGTTAAGCCTTTTTCCGGTAACCTGTCTACCTCCTGGAGTAACATCAAAGAAGAAGAAGCTGTCCAAAGATACAAGATGATAACCCAAAACAATGTTTTGCCTCCTCGGTTCCAAGTCCATAGCAAAGCTGATTGGCTCGCAGCTTCACCGGATCGGATGGTCGAATCGCCTTCCAATTCGACAGGAGTACTGGAAATCAAGTGCCCATTTTTCGACGGAGAGAAGAGCCGGGCCTTGCCGTGGTTGCGCATTCCGGTGCACTGTATCCCCCAGGCTCAGGGATTGATGGAGATTCTTGGCAAAGAGTGGATGCATTTCTATGTTTGGACACTGAATGGGAGTAGCTTGTTTAAGTTGTACAGGGACAGGGAGTATTGGGGTGTTTTGGAACAAGCTCTCTCGGATTTTTGGTGGAAACATGTTCAACCGGCGAGGGAGATTTTTAGTAACAGATCGAAAACGGTGAGGAGCACGCATCTGCTATTGAAACCGTTGAGGCCAGCAGAAACGCATGAGATGATTGATCATATAGTTTGTGAAAGCAGACGCATTGTTTGTAGGTCTGAGTTGTTGGTGCGTGAAGTCCATGCCAAAATGCAATTGATGTATCCCACGCCTATTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

277

Amino Acids

32.29

Weight (kDa)

9.68

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 34 - 166 6.8e-17 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 149
AciI CCGC 4 cut(s) 31, 147, 149, 175
AclWI GGATC 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 2 cut(s) 396, 566
AfiI CCNNNNNNNGG 4 cut(s) 102, 221, 447, 484
AflIII ACRYGT 1 cut(s) 625
AgsI TTSAA 2 cut(s) 632, 694
AjnI CCWGG 2 cut(s) 239, 477
AluBI AGCT 9 cut(s) 93, 112, 184, 206, 266, 335, 350, 552, 602
AluI AGCT 9 cut(s) 93, 112, 184, 206, 266, 335, 350, 552, 602
Alw21I GWGCWC 4 cut(s) 50, 140, 468, 680
Alw44I GTGCAC 1 cut(s) 464
AlwI GGATC 1 cut(s) 366
AoxI GGCC 3 cut(s) 164, 438, 704
ApaLI GTGCAC 1 cut(s) 464
ApeKI GCWGC 3 cut(s) 8, 65, 347
ArsI GACNNNNNNTTYG 2 cut(s) 744, 776
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 345, 682
BaeGI GKGCMC 2 cut(s) 413, 468
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 4 cut(s) 50, 140, 468, 680
BbvI GCAGC 2 cut(s) 52, 359
BccI CCATC 3 cut(s) 20, 358, 487
BceAI ACGGC 2 cut(s) 147, 430
BciT130I CCWGG 2 cut(s) 241, 479
BciVI GTATCC 2 cut(s) 482, 825
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 437
BfuI GTATCC 2 cut(s) 482, 825
BisI GCNGC 5 cut(s) 9, 66, 147, 150, 348
BlsI GCNGC 5 cut(s) 10, 67, 148, 151, 349
BmcAI AGTACT 1 cut(s) 396
Bme1390I CCNGG 3 cut(s) 241, 437, 479
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 3 cut(s) 241, 437, 479
BmsI GCATC 2 cut(s) 507, 691
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 262
Bpu10I CCTNAGC 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 147, 311, 446, 477
BsaWI WCCGGW 3 cut(s) 221, 355, 460
Bsc4I CCNNNNNNNGG 4 cut(s) 102, 221, 447, 484
Bse118I RCCGGY 1 cut(s) 634
Bse1I ACTGG 1 cut(s) 402
BseBI CCWGG 2 cut(s) 241, 479
BseDI CCNNGG 4 cut(s) 147, 311, 446, 477
BseGI GGATG 4 cut(s) 12, 27, 369, 522
BseLI CCNNNNNNNGG 4 cut(s) 102, 221, 447, 484
BseMII CTCAG 3 cut(s) 127, 497, 762
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 2 cut(s) 300, 688
BseSI GKGCMC 2 cut(s) 413, 468
BseXI GCAGC 2 cut(s) 52, 359
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 166, 440, 706
BsiHKAI GWGCWC 4 cut(s) 50, 140, 468, 680
BsiSI CCGG 5 cut(s) 222, 356, 436, 461, 635
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 4 cut(s) 102, 221, 447, 484
BsmFI GGGAC 1 cut(s) 584
BsmI GAATGC 1 cut(s) 456
BsnI GGCC 3 cut(s) 166, 440, 706
Bsp1286I GDGCHC 5 cut(s) 50, 140, 413, 468, 680
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 358, 659, 730
BspACI CCGC 4 cut(s) 31, 147, 149, 175
BspANI GGCC 3 cut(s) 166, 440, 706
BspCNI CTCAG 3 cut(s) 126, 496, 763
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 317
BspPI GGATC 1 cut(s) 366
BspQI GCTCTTC 1 cut(s) 425
BsrFI RCCGGY 1 cut(s) 634
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 634
BssECI CCNNGG 4 cut(s) 147, 311, 446, 477
BssMI GATC 3 cut(s) 358, 659, 730
Bst2UI CCWGG 2 cut(s) 241, 479
Bst4CI ACNGT 3 cut(s) 470, 670, 699
Bst6I CTCTTC 2 cut(s) 114, 425
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 6 cut(s) 6, 136, 173, 345, 680, 708
BstDEI CTNAG 3 cut(s) 113, 483, 771
BstDSI CCRYGG 2 cut(s) 147, 446
BstEII GGTNACC 1 cut(s) 224
BstF5I GGATG 4 cut(s) 12, 27, 369, 522
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 3 cut(s) 361, 662, 733
BstMBI GATC 3 cut(s) 358, 659, 730
BstMWI GCNNNNNNNGC 4 cut(s) 71, 172, 181, 451
BstNI CCWGG 2 cut(s) 241, 479
BstNSI RCATGY 1 cut(s) 629
BstPI GGTNACC 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 239, 435, 477
BstSLI GKGCMC 2 cut(s) 413, 468
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 52, 359
BstV2I GAAGAC 1 cut(s) 74
BsuI GTATCC 2 cut(s) 482, 825
BsuRI GGCC 3 cut(s) 166, 440, 706
BtgI CCRYGG 2 cut(s) 147, 446
BtsCI GGATG 4 cut(s) 12, 27, 369, 522
BtsIMutI CAGTG 3 cut(s) 50, 466, 536
Cac8I GCNNGC 6 cut(s) 6, 136, 173, 345, 680, 708
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 634
Cfr13I GGNCC 1 cut(s) 438
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 1 cut(s) 762
Csp6I GTAC 2 cut(s) 395, 565
CspCI CAANNNNNGTGG 1 cut(s) 808
CviAII CATG 3 cut(s) 626, 719, 794
CviQI GTAC 2 cut(s) 395, 565
DdeI CTNAG 3 cut(s) 113, 483, 771
DpnI GATC 3 cut(s) 360, 661, 732
DpnII GATC 3 cut(s) 358, 659, 730
Eam1104I CTCTTC 2 cut(s) 114, 425
EarI CTCTTC 2 cut(s) 114, 425
Eco57I CTGAAG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 224
EcoO65I GGTNACC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 239, 477
EcoT22I ATGCAT 1 cut(s) 522
FaeI CATG 3 cut(s) 629, 722, 797
FaiI YATR 9 cut(s) 72, 327, 528, 627, 720, 735, 737, 795, 832
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 625, 718, 793
FauI CCCGC 1 cut(s) 168
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 5 cut(s) 9, 66, 147, 150, 348
FokI GGATG 3 cut(s) 14, 376, 529
Fsp4HI GCNGC 5 cut(s) 9, 66, 147, 150, 348
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 1 cut(s) 455
GluI GCNGC 5 cut(s) 9, 66, 147, 150, 348
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 3 cut(s) 166, 440, 706
HapII CCGG 5 cut(s) 222, 356, 436, 461, 635
HgaI GACGC 1 cut(s) 762
HhaI GCGC 1 cut(s) 456
Hin1II CATG 3 cut(s) 629, 722, 797
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HinfI GANTC 2 cut(s) 371, 499
HpaII CCGG 5 cut(s) 222, 356, 436, 461, 635
HphI GGTGA 2 cut(s) 345, 682
Hpy166II GTNNAC 2 cut(s) 234, 466
Hpy188I TCNGA 5 cut(s) 87, 116, 363, 610, 772
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 2 cut(s) 234, 466
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 3 cut(s) 470, 670, 699
HpyCH4V TGCA 4 cut(s) 74, 466, 520, 805
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 172, 181, 451
HpyF3I CTNAG 3 cut(s) 113, 483, 771
Hsp92II CATG 3 cut(s) 629, 722, 797
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 730
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 3 cut(s) 358, 659, 730
LguI GCTCTTC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 98, 203, 675
Lsp1109I GCAGC 2 cut(s) 52, 359
LweI GCATC 2 cut(s) 507, 691
MaeIII GTNAC 4 cut(s) 56, 224, 245, 653
MalI GATC 3 cut(s) 360, 661, 732
MboI GATC 3 cut(s) 358, 659, 730
MboII GAAGA 6 cut(s) 74, 131, 208, 269, 272, 442
MfeI CAATTG 1 cut(s) 806
MhlI GDGCHC 5 cut(s) 50, 140, 413, 468, 680
MluCI AATT 4 cut(s) 38, 100, 382, 806
MnlI CCTC 7 cut(s) 177, 247, 318, 321, 633, 666, 696
Mph1103I ATGCAT 1 cut(s) 522
MseI TTAA 2 cut(s) 210, 558
MslI CAYNNNNRTG 2 cut(s) 461, 525
MspA1I CMGCKG 2 cut(s) 149, 175
MspI CCGG 5 cut(s) 222, 356, 436, 461, 635
MspR9I CCNGG 3 cut(s) 241, 437, 479
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 456
MvaI CCWGG 2 cut(s) 241, 479
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 71, 172, 181, 451
NciI CCSGG 1 cut(s) 437
NdeII GATC 3 cut(s) 358, 659, 730
NlaIII CATG 3 cut(s) 629, 722, 797
NlaIV GGNNCC 1 cut(s) 317
NsbI TGCGCA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 1 cut(s) 629
PciI ACATGT 1 cut(s) 625
PciSI GCTCTTC 1 cut(s) 425
PctI GAATGC 1 cut(s) 456
PfeI GAWTC 2 cut(s) 371, 499
PflMI CCANNNNNTGG 1 cut(s) 102
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 5 cut(s) 10, 67, 148, 151, 349
PscI ACATGT 1 cut(s) 625
Psp6I CCWGG 2 cut(s) 239, 477
PspEI GGTNACC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 239, 477
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 438
RsaI GTAC 2 cut(s) 396, 566
RsaNI GTAC 2 cut(s) 395, 565
RseI CAYNNNNRTG 2 cut(s) 461, 525
SacII CCGCGG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 210, 558
SatI GCNGC 5 cut(s) 9, 66, 147, 150, 348
Sau3AI GATC 3 cut(s) 358, 659, 730
Sau96I GGNCC 1 cut(s) 438
ScaI AGTACT 1 cut(s) 396
ScrFI CCNGG 3 cut(s) 241, 437, 479
SduI GDGCHC 5 cut(s) 50, 140, 413, 468, 680
SfaNI GCATC 2 cut(s) 507, 691
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SmiMI CAYNNNNRTG 2 cut(s) 461, 525
Sse9I AATT 4 cut(s) 38, 100, 382, 806
SsiI CCGC 4 cut(s) 31, 147, 149, 175
StyD4I CCNGG 3 cut(s) 239, 435, 477
TaaI ACNGT 3 cut(s) 470, 670, 699
TaqI TCGA 5 cut(s) 52, 369, 386, 420, 662
TasI AATT 4 cut(s) 38, 100, 382, 806
TatI WGTACW 2 cut(s) 394, 564
TauI GCSGC 2 cut(s) 149, 152
TfiI GAWTC 2 cut(s) 371, 499
Tru1I TTAA 2 cut(s) 210, 558
Tru9I TTAA 2 cut(s) 210, 558
TscAI CASTG 3 cut(s) 50, 473, 543
TseI GCWGC 3 cut(s) 8, 65, 347
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 3 cut(s) 50, 473, 543
Van91I CCANNNNNTGG 1 cut(s) 102
VneI GTGCAC 1 cut(s) 464
XceI RCATGY 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.