Rroxscaffold_7G00191260

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002455
Physical Location & Seq
Reverse (-)
31777152 .. 31782309
5158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191260.1

Sequence Viewer

Length: 834 bp
ATGCTAGGCACCCGAAGACAAATTCTCAGCCATTCTCATTACGCGCAGAGGTTTTATTCGTCCGAAAGTTATTCAGTTCTCAATTCACCTGGTCTTCAGCATTGGTTCAAGAATTGGCAAGGACTCAGAAAACAGAAACTGACTGCAAGCACTTTTGCTGCGGCTATCGGTTTTTGGAATCGCCGAAGAGTTGGGCTTTGGTTAGAGAAAATTGGAGCAACTGAGCCATTTTCTGGTAACCTGGCTACCTGTTGGAATAATATTAAAGAAGAGGAAGCACTTGAAAGATACAAGTTGATAACGGGAAATTCAGTCTCGTTTCCTGAATTTCAAGTCTATGCAAATGTAAATCCAGGAGATGACTGGCTAGCAGCTTCACCAGATGGGGTGGTTGATAACATGCTGTATGGATTGCCTCGACGAGGAGTGCTGGAGGTTAAATGCCCCTTCTTTGATGGAGATATGAGCAAGGCTTTCCCTTGGTCCCGAATTCCTCTTCACTGTATTCCACAGGCTCAGGGTTTAATGGAAATAGTTGACAGGGAATGGATGGATTTATATGTTTGGACGCCTAATGGAAGTAGCCTATTCAGGTTATACCGAGATGCAGCATACTGGGATATGTTGAAATATGCTCTCTCAGATTTTTGGTGGAATCATGTTCAACCAGCAAGGGAGTTGTACAGTAAATCTCATGCTATGCATCCTCTCATTGAATCGCTGAGGCCACAACCCAAGCATGAACATTGGCAATATATAGTTTATGAAAGTAAGCGCATTGTTGAAAGCTCGGATTTATTGTGGCGTGAAATTCATGGCAAGCTACAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

277

Amino Acids

32.46

Weight (kDa)

8.34

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 38 - 178 3.7e-16 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 161
AcsI RAATTY 5 cut(s) 21, 307, 326, 489, 810
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 569
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 2 cut(s) 233, 422
AgsI TTSAA 7 cut(s) 109, 284, 332, 628, 665, 716, 785
AjnI CCWGG 3 cut(s) 88, 240, 352
AluBI AGCT 3 cut(s) 374, 789, 823
AluI AGCT 3 cut(s) 374, 789, 823
Alw26I GTCTC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 1 cut(s) 725
ApeKI GCWGC 3 cut(s) 158, 371, 608
ApoI RAATTY 5 cut(s) 21, 307, 326, 489, 810
AspLEI GCGC 2 cut(s) 46, 777
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 78, 369
AsuNHI GCTAGC 1 cut(s) 367
AvaII GGWCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 8
BbsI GAAGAC 2 cut(s) 22, 86
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 3 cut(s) 145, 383, 620
BccI CCATC 3 cut(s) 377, 449, 544
BciT130I CCWGG 3 cut(s) 90, 242, 354
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 2 cut(s) 5, 368
BisI GCNGC 4 cut(s) 159, 162, 372, 609
BlsI GCNGC 4 cut(s) 160, 163, 373, 610
Bme1390I CCNGG 3 cut(s) 90, 242, 354
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 10, 485
BmrFI CCNGG 3 cut(s) 90, 242, 354
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 2 cut(s) 595, 712
BmtI GCTAGC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 2 cut(s) 22, 86
BpmI CTGGAG 1 cut(s) 452
Bpu10I CCTNAGC 2 cut(s) 516, 722
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 479
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 422
Bse1I ACTGG 2 cut(s) 368, 620
BseBI CCWGG 3 cut(s) 90, 242, 354
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 2 cut(s) 555, 703
BseLI CCNNNNNNNGG 2 cut(s) 233, 422
BseMII CTCAG 6 cut(s) 40, 139, 213, 530, 654, 713
BseNI ACTGG 2 cut(s) 368, 620
BseRI GAGGAG 1 cut(s) 438
BseXI GCAGC 3 cut(s) 145, 383, 620
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 727
BshNI GGYRCC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 2 cut(s) 233, 422
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 727
Bsp1407I TGTACA 1 cut(s) 681
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 727
BspCNI CTCAG 6 cut(s) 39, 138, 214, 529, 653, 714
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 2 cut(s) 10, 485
BspOI GCTAGC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 2 cut(s) 368, 620
BssECI CCNNGG 1 cut(s) 479
BssNI GRCGYC 1 cut(s) 569
BssT1I CCWWGG 1 cut(s) 479
Bst2UI CCWGG 3 cut(s) 90, 242, 354
Bst4CI ACNGT 2 cut(s) 503, 686
Bst6I CTCTTC 3 cut(s) 181, 264, 501
BstACI GRCGYC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 148, 369, 821
BstDEI CTNAG 6 cut(s) 26, 125, 222, 516, 640, 722
BstEII GGTNACC 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 420
BstF5I GGATG 2 cut(s) 555, 703
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 2 cut(s) 46, 777
BstMAI GTCTC 1 cut(s) 319
BstNI CCWGG 3 cut(s) 90, 242, 354
BstNSI RCATGY 1 cut(s) 403
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 88, 240, 352
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 145, 383, 620
BstV2I GAAGAC 2 cut(s) 22, 86
BsuRI GGCC 1 cut(s) 727
BtsCI GGATG 2 cut(s) 555, 703
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 3 cut(s) 148, 369, 821
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 2 cut(s) 46, 777
Cfr13I GGNCC 1 cut(s) 483
CseI GACGC 1 cut(s) 577
CsiI ACCWGGT 1 cut(s) 88
Csp6I GTAC 1 cut(s) 682
CviAII CATG 5 cut(s) 400, 659, 695, 740, 815
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 6 cut(s) 26, 125, 222, 516, 640, 722
Eam1104I CTCTTC 3 cut(s) 181, 264, 501
EarI CTCTTC 3 cut(s) 181, 264, 501
Eco130I CCWWGG 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 80
Eco91I GGTNACC 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 3 cut(s) 88, 240, 352
EcoT14I CCWWGG 1 cut(s) 479
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 479
FaeI CATG 5 cut(s) 403, 662, 698, 743, 818
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 399, 658, 694, 739, 814
Fnu4HI GCNGC 4 cut(s) 159, 162, 372, 609
FokI GGATG 2 cut(s) 562, 690
Fsp4HI GCNGC 4 cut(s) 159, 162, 372, 609
FspBI CTAG 2 cut(s) 5, 368
GlaI GCGC 2 cut(s) 45, 776
GluI GCNGC 4 cut(s) 159, 162, 372, 609
GsuI CTGGAG 1 cut(s) 452
HaeIII GGCC 1 cut(s) 727
HgaI GACGC 1 cut(s) 577
HhaI GCGC 2 cut(s) 46, 777
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 5 cut(s) 403, 662, 698, 743, 818
Hin6I GCGC 2 cut(s) 44, 775
HinP1I GCGC 2 cut(s) 44, 775
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 4 cut(s) 123, 178, 655, 716
HphI GGTGA 2 cut(s) 78, 369
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 4 cut(s) 64, 128, 643, 793
Hpy188III TCNNGA 3 cut(s) 109, 323, 486
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 2 cut(s) 503, 686
HpyCH4V TGCA 4 cut(s) 146, 341, 608, 703
HpyF3I CTNAG 6 cut(s) 26, 125, 222, 516, 640, 722
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 5 cut(s) 403, 662, 698, 743, 818
HspAI GCGC 2 cut(s) 44, 775
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 3 cut(s) 145, 383, 620
LweI GCATC 2 cut(s) 595, 712
MabI ACCWGGT 1 cut(s) 88
MaeI CTAG 2 cut(s) 5, 368
MaeIII GTNAC 1 cut(s) 236
MboII GAAGA 5 cut(s) 27, 86, 198, 281, 488
MluCI AATT 8 cut(s) 21, 82, 112, 210, 307, 326, 489, 810
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 8 cut(s) 42, 265, 416, 426, 427, 504, 717, 717
Mph1103I ATGCAT 1 cut(s) 705
MseI TTAA 3 cut(s) 264, 438, 524
MspR9I CCNGG 3 cut(s) 90, 242, 354
MvaI CCWGG 3 cut(s) 90, 242, 354
MvnI CGCG 1 cut(s) 44
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 5 cut(s) 403, 662, 698, 743, 818
NlaIV GGNNCC 2 cut(s) 10, 485
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 403
PfeI GAWTC 3 cut(s) 178, 655, 716
PflMI CCANNNNNTGG 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 4 cut(s) 160, 163, 373, 610
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 3 cut(s) 88, 240, 352
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 3 cut(s) 88, 240, 352
PspN4I GGNNCC 2 cut(s) 10, 485
PspPI GGNCC 1 cut(s) 483
PstNI CAGNNNCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
SaqAI TTAA 3 cut(s) 264, 438, 524
SatI GCNGC 4 cut(s) 159, 162, 372, 609
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 90, 242, 354
SetI ASST 9 cut(s) 53, 91, 243, 251, 376, 438, 596, 791, 825
SexAI ACCWGGT 1 cut(s) 88
SfaNI GCATC 2 cut(s) 595, 712
SinI GGWCC 1 cut(s) 483
Sse9I AATT 8 cut(s) 21, 82, 112, 210, 307, 326, 489, 810
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 262
SspMI CTAG 2 cut(s) 5, 368
StyD4I CCNGG 3 cut(s) 88, 240, 352
StyI CCWWGG 1 cut(s) 479
TaaI ACNGT 2 cut(s) 503, 686
TaqI TCGA 1 cut(s) 418
TasI AATT 8 cut(s) 21, 82, 112, 210, 307, 326, 489, 810
TatI WGTACW 1 cut(s) 681
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 178, 655, 716
Tru1I TTAA 3 cut(s) 264, 438, 524
Tru9I TTAA 3 cut(s) 264, 438, 524
TscAI CASTG 1 cut(s) 506
TseI GCWGC 3 cut(s) 158, 371, 608
TspDTI ATGAA 3 cut(s) 756, 780, 803
TspRI CASTG 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 420
XapI RAATTY 5 cut(s) 21, 307, 326, 489, 810
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XspI CTAG 2 cut(s) 5, 368
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.