Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Forward (+)

20256641 .. 20262620

Gene Structure 5980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012586

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2670 bp

ATGGCAACGACTTGGTGGAGGCACTTTAGGGTTTCGGGTCCACGACCTCCTCTGGAGAAACTAGAAAGTTACACGATGGCAATTCACCATGGCGGCTATTTTAACCAAATGCCTAATGGTACCAGGAAATACAAGATAGCAACATTTAACAAACTTGGTGGAAAGAGCTTTTTAGACAACATGGACCCCGACAATATTTCATGGGTTGAGATGAATAACATAGCCTGGGATTTGGGGTATAGGGAAAAACCAGTATCCTACTACTATAAGCTGCCAGGGTCATCAAGTGGTGAAGGGTGGATGAAGCTGCTTGGTGATGGAGATTGTGTAGAGATGATTAATCAACTTCCTAAAAGAAAAAGGATTATTGAAGTTTACATAACTGGGGGTGGACCAAGAAAGAAGAGGGAAGCTGAACTAGATGATGACCATCCACCAGATCCAAGTTGGCATAATCCATTGAATAGTGTGGGTACAATAGACAATGAGAATATGATTGATGAGGCTAGTTTGCTTTGCAGCCAATTAAATGCAGAGAGTGACAATGTGGTTGAAGATAGTAATGTTGCTGAGAATGAAGGCCCGGAGGTGGTTGAAGTGTGTGGTACAGTAGATACCCTATTGTCAGTTAGGGACTTTGCAAGTATAGGTGAGGTTGTTAACTTGTTTGGTGATACGCATAGTAGTATAAGGGATGAGGGGCAGTCTAGTCATTGCATTGACTTGGAAAAAATAAGTGAAGGAAAAGAATCTAATGTGAAGATGGTGACAAAAGCTGCCAACAAGACATGTGGGGTTGTTGTAGCAGAAAATGAGATGATAAAAGACTCTGGAGCACAGAAGCAAGTTGCAGCACAAAAAGCTAATAATGGGGTGAAAGGGAAGCAAACAGAAGTTGTTGAAGAAGAAGTCGAAGAAAAGAAAGGGTCAAGCAAGAAAGGAGGAAAAGATAAGGGAAACAAGTACAATACCAGGTTCAAGGGTAAGAAGAAGGCCAAGAGTCAAGACCAAGATGAATACTCAACTGATGATTCTGATTTTTATGTAGATAGTGATTACGATCAGAATGGGCATGATGATGAGATTGATTTTGATGAAAATGTAGCCGAGGGGAATAGAGTTGAAGAATATGAAGACATGGGGTATGAAGGGATAATTTCAGATGATGATGAGTCAGAGGATGAGTTGAAGAGTTTGGATGGTTCCGAAACAGAGGAGGATGAACATGGAAATCTGCTTCCCAAGAGCCAACAAAGGAAACTAAAAGCAAAGTCATGGAGGAGAGAAGTTGATTTGAAGAATCCAAATTTCTGTATTGGTCAAGCTTTTGCAGATAATGAGGTGTTAAAAGAGGCAGTGAGGGAATATGCAATACGAAAACAAAGGGGTTTATGGTTTGACAAGAACAATAAGTATAAGATTCAAGTGAAGTGTCAAGTTGGGTGCCCTTTCTGGTTATATGCTAGCAGAATTGATTCGGAAGATCCAACAATGTATATCAAGACGTTGAGGTTGGTTCACAAATGTCATGTTGTGCAAGAACTTCCATTTCTGAATGTTAACAGAATAGCAGAAGAGGTGGCTCAAGATTTAAGGGTCAATCCTGAATGGCAAAGAAAAGGGGTTTTGAATCATATTCAAAAAAAGTTTGGTCTTGATGTATCGTTGCAAACAGTCTATAGAGCTACTCTAGCTGCAAAGAGGAAGAATGATGGGTGGATCTACTTCTCAAGTAAAGGCTGGGAGAAAAAGAAAGATGGATGGAGAGGTTTGATTCGTGATCATATTCCAATTGTGTCTATATTGCAACATGAACATGCTCGTGGTCTAATAATTCTCGATCATCTTCATCCTAGTATGCTTGCTGCTATCCACAAACACATCATCCGCACCCAATTTCAGTGCTCTCGAAGTTACTCTGCTGCTTACGCAATCAGTCTTCAGAACAGCTCCAAAAATTGGCAACAGCTCAGAGAAGAGAAACTGACGGCGAGCACATTCGCCGCGGCTGTCGGATTCTGGCCTCGCCAGCGGGTCAAGCTCTGGCGAGAGAAGATTGGAGCTGTTAAGCCGTTTTCCGGTAACCTATCCACCTCCTGGAGTAACATCAAAGAAGAAGAAGCTGTCCAAAGGTACAAGATGATTACCCAAAACAGTGTTTTGCCTCCTCGGTTCCAAGTCCATAGCAAAGCTGATTGGCTCGCAGCTTCACCGGATGGGATAGTCGAATCGCCTTCCAATTCGACAGGAGTACTGGAAGTCAAGTGCCCATTTTTCGACGGAGAGAAGAGCCGGGCCTTGCCGTGGTTGCGCATTCCGGCGCACTGTATCCCCCAGGCTCAGGGATTGATGGAGATTCTTGACAAAGAGTGGATGCATTTCTATGTTTGGACACTGAATGGGAGTAGCTTGTTTAAGTTGTACAGGGACAGGGAGTATTGGGGTGTTTTGGAACAAGCTCTCTCGGATTTTTGGTGGAAACATGTTCAACCGGCGAGGGAGATTTTTAGTGGCAGATCGAAAACGGTGAGGAGCACGCATCTGCTATTGAAACCGTTGAGGCCAGCGGAAACGCATGAGATGATTGATCATATAGTTTGTGAAAGCAGACGCATTGTTTGTAGGTCCGAGTTGTTGGTGCGTGAAGTCCATGCCAAAATGCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

890

Amino Acids

101.65

Weight (kDa)

6.29

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PB1-like	PF26130	23 - 128	1e-13	PB1-like domain
DBD_Tnp_Mut	PF03108	438 - 492	1.1e-07	MuDR family transposase
YqaJ	PF09588	653 - 782	1.2e-15	YqaJ-like viral recombinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	2312
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	2 cut(s)	119, 1443
AccB7I	CCANNNNNTGG	2 cut(s)	1959, 2097
AccII	CGCG	1 cut(s)	2006
AciI	CCGC	6 cut(s)	93, 1888, 2004, 2006, 2032, 2567
AclWI	GGATC	3 cut(s)	434, 1478, 1727
AcsI	RAATTY	1 cut(s)	1306
AcuI	CTGAAG	1 cut(s)	1925
AfaI	GTAC	7 cut(s)	121, 475, 607, 965, 2135, 2253, 2423
AfiI	CCNNNNNNNGG	6 cut(s)	589, 1959, 2078, 2097, 2304, 2341
AflIII	ACRYGT	2 cut(s)	788, 2482
AjnI	CCWGG	6 cut(s)	122, 224, 274, 971, 2096, 2334
Alw21I	GWGCWC	4 cut(s)	838, 1907, 1997, 2537
AlwI	GGATC	3 cut(s)	434, 1478, 1727
AoxI	GGCC	5 cut(s)	580, 993, 2021, 2295, 2561
ApeKI	GCWGC	9 cut(s)	271, 307, 519, 776, 851, 1694, 1865, 1922, 2204
ApoI	RAATTY	1 cut(s)	1306
ArsI	GACNNNNNNTTYG	2 cut(s)	2601, 2633
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	1474
Asp718I	GGTACC	1 cut(s)	119
AspLEI	GCGC	2 cut(s)	2313, 2323
AspS9I	GGNCC	6 cut(s)	38, 184, 392, 581, 2295, 2625
AsuC2I	CCSGG	2 cut(s)	584, 2294
AsuHPI	GGTGA	9 cut(s)	77, 302, 326, 662, 683, 778, 886, 2202, 2539
AsuNHI	GCTAGC	1 cut(s)	1463
AvaII	GGWCC	4 cut(s)	38, 184, 392, 2625
BaeGI	GKGCMC	2 cut(s)	1448, 2270
BanI	GGYRCC	2 cut(s)	119, 1443
BauI	CACGAG	1 cut(s)	1821
BbsI	GAAGAC	2 cut(s)	1140, 1931
Bbv12I	GWGCWC	4 cut(s)	838, 1907, 1997, 2537
BbvI	GCAGC	9 cut(s)	258, 294, 531, 763, 863, 1681, 1852, 1909, 2216
BceAI	ACGGC	3 cut(s)	2004, 2056, 2287
BciT130I	CCWGG	6 cut(s)	124, 226, 276, 973, 2098, 2336
BciVI	GTATCC	2 cut(s)	265, 2339
BclI	TGATCA	2 cut(s)	1780, 2587
BcnI	CCSGG	2 cut(s)	584, 2294
BfaI	CTAG	7 cut(s)	62, 419, 507, 708, 1464, 1691, 1854
BfmI	CTRYAG	1 cut(s)	1678
BfuI	GTATCC	2 cut(s)	265, 2339
BmcAI	AGTACT	1 cut(s)	2253
Bme1390I	CCNGG	8 cut(s)	124, 226, 276, 584, 973, 2098, 2294, 2336
Bme18I	GGWCC	4 cut(s)	38, 184, 392, 2625
BmgT120I	GGNCC	6 cut(s)	38, 184, 392, 581, 2295, 2625
BmiI	GGNNCC	6 cut(s)	39, 121, 186, 1204, 1445, 2174
BmrFI	CCNGG	8 cut(s)	124, 226, 276, 584, 973, 2098, 2294, 2336
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	2364, 2548
BmtI	GCTAGC	1 cut(s)	1467
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	2 cut(s)	1140, 1931
BpmI	CTGGAG	3 cut(s)	74, 852, 2119
Bpu10I	CCTNAGC	1 cut(s)	2340
BpuEI	CTTGAG	2 cut(s)	1569, 1714
BpuMI	CCSGG	2 cut(s)	584, 2294
BsaBI	GATNNNNATC	2 cut(s)	429, 1059
BsaJI	CCNNGG	8 cut(s)	88, 225, 275, 1107, 2004, 2168, 2303, 2334
BsaWI	WCCGGW	2 cut(s)	2078, 2212
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	6 cut(s)	589, 1959, 2078, 2097, 2304, 2341
Bse118I	RCCGGY	1 cut(s)	2491
Bse1I	ACTGG	3 cut(s)	251, 388, 2259
Bse3DI	GCAATG	1 cut(s)	712
Bse8I	GATNNNNATC	2 cut(s)	429, 1059
BseBI	CCWGG	6 cut(s)	124, 226, 276, 973, 2098, 2336
BseDI	CCNNGG	8 cut(s)	88, 225, 275, 1107, 2004, 2168, 2303, 2334
BseJI	GATNNNNATC	2 cut(s)	429, 1059
BseLI	CCNNNNNNNGG	6 cut(s)	589, 1959, 2078, 2097, 2304, 2341
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	3 cut(s)	561, 1984, 2354
BseNI	ACTGG	3 cut(s)	251, 388, 2259
BseRI	GAGGAG	5 cut(s)	39, 1229, 1294, 2157, 2545
BseSI	GKGCMC	2 cut(s)	1448, 2270
BseXI	GCAGC	9 cut(s)	258, 294, 531, 763, 863, 1681, 1852, 1909, 2216
BseYI	CCCAGC	1 cut(s)	1740
Bsh1236I	CGCG	1 cut(s)	2006
BshFI	GGCC	5 cut(s)	582, 995, 2023, 2297, 2563
BshNI	GGYRCC	2 cut(s)	119, 1443
BsiHKAI	GWGCWC	4 cut(s)	838, 1907, 1997, 2537
BsiSI	CCGG	6 cut(s)	584, 2079, 2213, 2293, 2318, 2492
BslFI	GGGAC	2 cut(s)	647, 2441
BslI	CCNNNNNNNGG	6 cut(s)	589, 1959, 2078, 2097, 2304, 2341
BsmFI	GGGAC	2 cut(s)	647, 2441
BsmI	GAATGC	1 cut(s)	2313
BsnI	GGCC	5 cut(s)	582, 995, 2023, 2297, 2563
Bsp1286I	GDGCHC	6 cut(s)	838, 1448, 1907, 1997, 2270, 2537
Bsp1407I	TGTACA	1 cut(s)	2421
Bsp143I	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	6 cut(s)	93, 1888, 2004, 2006, 2032, 2567
BspANI	GGCC	5 cut(s)	582, 995, 2023, 2297, 2563
BspCNI	CTCAG	3 cut(s)	562, 1983, 2353
BspFNI	CGCG	1 cut(s)	2006
BspLI	GGNNCC	6 cut(s)	39, 121, 186, 1204, 1445, 2174
BspOI	GCTAGC	1 cut(s)	1467
BspPI	GGATC	3 cut(s)	434, 1478, 1727
BspQI	GCTCTTC	1 cut(s)	2282
BspT107I	GGYRCC	2 cut(s)	119, 1443
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	2491
BsrGI	TGTACA	1 cut(s)	2421
BsrI	ACTGG	3 cut(s)	251, 388, 2259
BssAI	RCCGGY	1 cut(s)	2491
BssECI	CCNNGG	8 cut(s)	88, 225, 275, 1107, 2004, 2168, 2303, 2334
BssMI	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
BssSI	CACGAG	1 cut(s)	1821
BssT1I	CCWWGG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	1821
Bst2UI	CCWGG	6 cut(s)	124, 226, 276, 973, 2098, 2336
Bst4CI	ACNGT	6 cut(s)	610, 1675, 2156, 2327, 2527, 2556
Bst6I	CTCTTC	5 cut(s)	398, 1184, 1569, 1971, 2282
BstAUI	TGTACA	1 cut(s)	2421
BstC8I	GCNNGC	7 cut(s)	1465, 1863, 1993, 2030, 2202, 2537, 2565
BstDEI	CTNAG	3 cut(s)	570, 1970, 2340
BstDSI	CCRYGG	3 cut(s)	88, 2004, 2303
BstEII	GGTNACC	1 cut(s)	2081
BstFNI	CGCG	1 cut(s)	2006
BstHHI	GCGC	2 cut(s)	2313, 2323
BstKTI	GATC	8 cut(s)	442, 1063, 1486, 1722, 1783, 1843, 2519, 2590
BstMBI	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
BstMWI	GCNNNNNNNGC	6 cut(s)	860, 1691, 1928, 2029, 2038, 2308
BstNI	CCWGG	6 cut(s)	124, 226, 276, 973, 2098, 2336
BstNSI	RCATGY	3 cut(s)	792, 1820, 2486
BstPI	GGTNACC	1 cut(s)	2081
BstSCI	CCNGG	8 cut(s)	122, 224, 274, 582, 971, 2096, 2292, 2334
BstSFI	CTRYAG	1 cut(s)	1678
BstSLI	GKGCMC	2 cut(s)	1448, 2270
BstUI	CGCG	1 cut(s)	2006
BstV1I	GCAGC	9 cut(s)	258, 294, 531, 763, 863, 1681, 1852, 1909, 2216
BstV2I	GAAGAC	2 cut(s)	1140, 1931
BstX2I	RGATCY	3 cut(s)	439, 1483, 1719
BstYI	RGATCY	3 cut(s)	439, 1483, 1719
BsuI	GTATCC	2 cut(s)	265, 2339
BsuRI	GGCC	5 cut(s)	582, 995, 2023, 2297, 2563
BtgI	CCRYGG	3 cut(s)	88, 2004, 2303
BtsI	GCAGTG	1 cut(s)	1362
BtsIMutI	CAGTG	5 cut(s)	1362, 1907, 2161, 2323, 2393
Cac8I	GCNNGC	7 cut(s)	1465, 1863, 1993, 2030, 2202, 2537, 2565
CfoI	GCGC	2 cut(s)	2313, 2323
Cfr10I	RCCGGY	1 cut(s)	2491
Cfr13I	GGNCC	6 cut(s)	38, 184, 392, 581, 2295, 2625
Cfr42I	CCGCGG	1 cut(s)	2007
CseI	GACGC	1 cut(s)	2619
CsiI	ACCWGGT	1 cut(s)	971
Csp6I	GTAC	7 cut(s)	120, 474, 606, 964, 2134, 2252, 2422
CspCI	CAANNNNNGTGG	4 cut(s)	139, 174, 772, 807
CviQI	GTAC	7 cut(s)	120, 474, 606, 964, 2134, 2252, 2422
DdeI	CTNAG	3 cut(s)	570, 1970, 2340
DpnI	GATC	8 cut(s)	441, 1062, 1485, 1721, 1782, 1842, 2518, 2589
DpnII	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
Eam1104I	CTCTTC	5 cut(s)	398, 1184, 1569, 1971, 2282
EarI	CTCTTC	5 cut(s)	398, 1184, 1569, 1971, 2282
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	4 cut(s)	38, 184, 392, 2625
Eco57I	CTGAAG	1 cut(s)	1925
Eco91I	GGTNACC	1 cut(s)	2081
EcoO65I	GGTNACC	1 cut(s)	2081
EcoRII	CCWGG	6 cut(s)	122, 224, 274, 971, 2096, 2334
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	2379
ErhI	CCWWGG	1 cut(s)	88
FaqI	GGGAC	2 cut(s)	647, 2441
FauI	CCCGC	1 cut(s)	2025
FbaI	TGATCA	2 cut(s)	1780, 2587
FspBI	CTAG	7 cut(s)	62, 419, 507, 708, 1464, 1691, 1854
FspI	TGCGCA	1 cut(s)	2312
GlaI	GCGC	2 cut(s)	2312, 2322
GsaI	CCCAGC	1 cut(s)	1744
GsuI	CTGGAG	3 cut(s)	74, 852, 2119
HaeIII	GGCC	5 cut(s)	582, 995, 2023, 2297, 2563
HapII	CCGG	6 cut(s)	584, 2079, 2213, 2293, 2318, 2492
HgaI	GACGC	1 cut(s)	2619
HhaI	GCGC	2 cut(s)	2313, 2323
Hin6I	GCGC	2 cut(s)	2311, 2321
HinP1I	GCGC	2 cut(s)	2311, 2321
HincII	GTYRAC	2 cut(s)	661, 1561
HindII	GTYRAC	2 cut(s)	661, 1561
HindIII	AAGCTT	1 cut(s)	1323
HpaI	GTTAAC	2 cut(s)	661, 1561
HpaII	CCGG	6 cut(s)	584, 2079, 2213, 2293, 2318, 2492
HphI	GGTGA	9 cut(s)	77, 302, 326, 662, 683, 778, 886, 2202, 2539
Hpy166II	GTNNAC	6 cut(s)	41, 376, 392, 661, 1519, 1561
Hpy8I	GTNNAC	6 cut(s)	41, 376, 392, 661, 1519, 1561
Hpy99I	CGWCG	1 cut(s)	2282
HpyAV	CCTTC	6 cut(s)	287, 572, 734, 985, 1142, 2244
HpyCH4III	ACNGT	6 cut(s)	610, 1675, 2156, 2327, 2527, 2556
HpyCH4IV	ACGT	1 cut(s)	1505
HpyF10VI	GCNNNNNNNGC	6 cut(s)	860, 1691, 1928, 2029, 2038, 2308
HpyF3I	CTNAG	3 cut(s)	570, 1970, 2340
HpySE526I	ACGT	1 cut(s)	1505
HspAI	GCGC	2 cut(s)	2311, 2321
KpnI	GGTACC	1 cut(s)	123
Ksp22I	TGATCA	2 cut(s)	1780, 2587
KspAI	GTTAAC	2 cut(s)	661, 1561
KspI	CCGCGG	1 cut(s)	2007
Kzo9I	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
LguI	GCTCTTC	1 cut(s)	2282
LmnI	GCTCC	4 cut(s)	833, 1955, 2060, 2532
Lsp1109I	GCAGC	9 cut(s)	258, 294, 531, 763, 863, 1681, 1852, 1909, 2216
LweI	GCATC	2 cut(s)	2364, 2548
MabI	ACCWGGT	1 cut(s)	971
MaeI	CTAG	7 cut(s)	62, 419, 507, 708, 1464, 1691, 1854
MaeII	ACGT	1 cut(s)	1505
MaeIII	GTNAC	6 cut(s)	68, 539, 766, 1913, 2081, 2102
MalI	GATC	8 cut(s)	441, 1062, 1485, 1721, 1782, 1842, 2518, 2589
MboI	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
MfeI	CAATTG	1 cut(s)	1791
MflI	RGATCY	3 cut(s)	439, 1483, 1719
MhlI	GDGCHC	6 cut(s)	838, 1448, 1907, 1997, 2270, 2537
MlyI	GAGTC	3 cut(s)	821, 1009, 1181
MmeI	TCCRAC	2 cut(s)	1511, 1993
Mph1103I	ATGCAT	1 cut(s)	2379
MroXI	GAANNNNTTC	1 cut(s)	1474
MslI	CAYNNNNRTG	4 cut(s)	1077, 1815, 1821, 2382
MspA1I	CMGCKG	3 cut(s)	2006, 2032, 2567
MspI	CCGG	6 cut(s)	584, 2079, 2213, 2293, 2318, 2492
MspR9I	CCNGG	8 cut(s)	124, 226, 276, 584, 973, 2098, 2294, 2336
MunI	CAATTG	1 cut(s)	1791
Mva1269I	GAATGC	1 cut(s)	2313
MvaI	CCWGG	6 cut(s)	124, 226, 276, 973, 2098, 2336
MvnI	CGCG	1 cut(s)	2006
MwoI	GCNNNNNNNGC	6 cut(s)	860, 1691, 1928, 2029, 2038, 2308
NciI	CCSGG	2 cut(s)	584, 2294
NcoI	CCATGG	1 cut(s)	88
NdeII	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
NheI	GCTAGC	1 cut(s)	1463
NlaIV	GGNNCC	6 cut(s)	39, 121, 186, 1204, 1445, 2174
NmeAIII	GCCGAG	1 cut(s)	1132
NmuCI	GTSAC	2 cut(s)	539, 766
NsbI	TGCGCA	1 cut(s)	2312
NsiI	ATGCAT	1 cut(s)	2379
NspI	RCATGY	3 cut(s)	792, 1820, 2486
PciI	ACATGT	2 cut(s)	788, 2482
PciSI	GCTCTTC	1 cut(s)	2282
PctI	GAATGC	1 cut(s)	2313
PdmI	GAANNNNTTC	1 cut(s)	1474
PflMI	CCANNNNNTGG	2 cut(s)	1959, 2097
PfoI	TCCNGGA	1 cut(s)	2096
PleI	GAGTC	3 cut(s)	821, 1008, 1180
PpsI	GAGTC	3 cut(s)	821, 1008, 1180
PscI	ACATGT	2 cut(s)	788, 2482
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	6 cut(s)	122, 224, 274, 971, 2096, 2334
PspEI	GGTNACC	1 cut(s)	2081
PspFI	CCCAGC	1 cut(s)	1740
PspGI	CCWGG	6 cut(s)	122, 224, 274, 971, 2096, 2334
PspN4I	GGNNCC	6 cut(s)	39, 121, 186, 1204, 1445, 2174
PspPI	GGNCC	6 cut(s)	38, 184, 392, 581, 2295, 2625
PsuI	RGATCY	3 cut(s)	439, 1483, 1719
RsaI	GTAC	7 cut(s)	121, 475, 607, 965, 2135, 2253, 2423
RsaNI	GTAC	7 cut(s)	120, 474, 606, 964, 2134, 2252, 2422
RseI	CAYNNNNRTG	4 cut(s)	1077, 1815, 1821, 2382
SacII	CCGCGG	1 cut(s)	2007
SapI	GCTCTTC	1 cut(s)	2282
Sau3AI	GATC	8 cut(s)	439, 1060, 1483, 1719, 1780, 1840, 2516, 2587
Sau96I	GGNCC	6 cut(s)	38, 184, 392, 581, 2295, 2625
ScaI	AGTACT	1 cut(s)	2253
SchI	GAGTC	3 cut(s)	821, 1009, 1181
ScrFI	CCNGG	8 cut(s)	124, 226, 276, 584, 973, 2098, 2294, 2336
SduI	GDGCHC	6 cut(s)	838, 1448, 1907, 1997, 2270, 2537
SexAI	ACCWGGT	1 cut(s)	971
SfaNI	GCATC	2 cut(s)	2364, 2548
SfcI	CTRYAG	1 cut(s)	1678
Sfr303I	CCGCGG	1 cut(s)	2007
SgrBI	CCGCGG	1 cut(s)	2007
SinI	GGWCC	4 cut(s)	38, 184, 392, 2625
SmiMI	CAYNNNNRTG	4 cut(s)	1077, 1815, 1821, 2382
SmlI	CTYRAG	2 cut(s)	1584, 1729
SmoI	CTYRAG	2 cut(s)	1584, 1729
SsiI	CCGC	6 cut(s)	93, 1888, 2004, 2006, 2032, 2567
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	7 cut(s)	62, 419, 507, 708, 1464, 1691, 1854
StyD4I	CCNGG	8 cut(s)	122, 224, 274, 582, 971, 2096, 2292, 2334
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	6 cut(s)	610, 1675, 2156, 2327, 2527, 2556
TaiI	ACGT	1 cut(s)	1508
TaqI	TCGA	7 cut(s)	912, 1839, 1909, 2226, 2243, 2277, 2519
TatI	WGTACW	3 cut(s)	963, 2251, 2421
TauI	GCSGC	3 cut(s)	96, 2006, 2009
TscAI	CASTG	5 cut(s)	1362, 1907, 2161, 2330, 2400
TseFI	GTSAC	2 cut(s)	539, 766
TseI	GCWGC	9 cut(s)	271, 307, 519, 776, 851, 1694, 1865, 1922, 2204
Tsp45I	GTSAC	2 cut(s)	539, 766
TspGWI	ACGGA	1 cut(s)	2295
TspRI	CASTG	5 cut(s)	1362, 1907, 2161, 2330, 2400
Van91I	CCANNNNNTGG	2 cut(s)	1959, 2097
VpaK11BI	GGWCC	4 cut(s)	38, 184, 392, 2625
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	1306
XceI	RCATGY	3 cut(s)	792, 1820, 2486
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 444
XmnI	GAANNNNTTC	1 cut(s)	1474
XspI	CTAG	7 cut(s)	62, 419, 507, 708, 1464, 1691, 1854
ZrmI	AGTACT	1 cut(s)	2253
Zsp2I	ATGCAT	1 cut(s)	2379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.