Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Forward (+)

1211185 .. 1213856

Gene Structure 2672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G017000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTGCGACGGCGATTGCTGATGCAACTAGTCGGAGAAACTACAGCAACCAATTCTATTCAGTACTGGATCCTAGTATGCTTGTTAACCACAGAAAAGTTCTCAACCATTCTCATTGCTCTATGAGATTTGCTTCATCCGGAGGTTATTCTGTTCTTCACTCAAGTGGTCTTCAGCACTGGTTCAAAAATTGGCAAGGACTCAGAAAACATAAACTGACAGCTAGTACTTTTGCTGCGGCCATTGGTTTTTTTCATCGCCGAAGACTCCAGCTTTGGTTGGAGAAGATTGGAGCAATTGAGCCATTTTCGGGTAACCTGGCTACCTGTTGGAGCAATATCAAAGAAGAGGAAGCACTTGAAAGATACAAACTAATAACAGGAAATTCTGTCTTGTTTCCTGAATTTCAAGTCTATGGTAATAGAAATGCTGGAGATGATTGGCTAGGAGCTTCACCAGATGGGGTGGTTGATAGACTGGTATACGGATTGCCTTCACGAGGAGTGCTGGAGATTAAGTGCCCATTTTTTGATGGAAATATGAAAAAGGCTACCCCTTGGTCACGAATTCCTCTATACTGTGTTCCACAGGCTCAGGGTTTAATGGAAATACTTGACAGGGATTGGATGGATTTCTATGTTTGGACTCCTAAAGGGAGCAGCCTATTCAGAGTATACCGAGATGCAGAATACTGGGATGGTTTGAAAATGGTTCTCTCAGATTTTTGGTGGAACCATGTCCAGCCAGCAAGGGAGATCTGCAGTAAGTCTCAGATTACGGATCCCCTCCTTGAATTAAGATCACTCAAACCAGCACCCAGGCATGAAATGTGTAGTTATATAGTTTATGAAAGCAAACGCATTGTTGACAGCTCCAAGTTATTGATGCGTGAAATCAATGGCAAACTGATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

306

Amino Acids

35.08

Weight (kDa)

9.14

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	483, 675
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	4 cut(s)	65, 78, 776, 789
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	3 cut(s)	385, 404, 567
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	2 cut(s)	66, 229
AfiI	CCNNNNNNNGG	2 cut(s)	311, 500
AgsI	TTSAA	5 cut(s)	187, 362, 410, 706, 794
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	318, 818
AleI	CACNNNNGTG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	224, 274, 452, 873
AluI	AGCT	4 cut(s)	224, 274, 452, 873
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	4 cut(s)	65, 78, 776, 789
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	236, 660
ApoI	RAATTY	3 cut(s)	385, 404, 567
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AsuHPI	GGTGA	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	524
BamHI	GGATCC	2 cut(s)	70, 781
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	164, 271
BbvI	GCAGC	2 cut(s)	223, 672
BccI	CCATC	4 cut(s)	455, 527, 622, 692
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	320, 820
BcoDI	GTCTC	1 cut(s)	774
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 75, 225, 446
BfmI	CTRYAG	2 cut(s)	43, 760
BglII	AGATCT	1 cut(s)	756
BisI	GCNGC	3 cut(s)	237, 240, 661
BlsI	GCNGC	3 cut(s)	238, 241, 662
BmcAI	AGTACT	2 cut(s)	66, 229
Bme1390I	CCNGG	2 cut(s)	320, 820
BmiI	GGNNCC	3 cut(s)	72, 734, 783
BmrFI	CCNGG	2 cut(s)	320, 820
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	13, 673, 876
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	2 cut(s)	164, 271
BpmI	CTGGAG	3 cut(s)	254, 453, 530
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	557, 818
BsaWI	WCCGGW	1 cut(s)	140
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	311, 500
Bse1I	ACTGG	4 cut(s)	72, 185, 483, 698
Bse3DI	GCAATG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	320, 820
BseDI	CCNNGG	2 cut(s)	557, 818
BseGI	GGATG	3 cut(s)	137, 633, 703
BseLI	CCNNNNNNNGG	2 cut(s)	311, 500
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	4 cut(s)	217, 608, 732, 785
BseNI	ACTGG	4 cut(s)	72, 185, 483, 698
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	223, 672
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	311, 500
BsmAI	GTCTC	1 cut(s)	774
BsnI	GGCC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	70, 756, 781, 800
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	4 cut(s)	216, 607, 731, 784
BspEI	TCCGGA	1 cut(s)	140
BspLI	GGNNCC	3 cut(s)	72, 734, 783
BspMAI	CTGCAG	1 cut(s)	764
BspPI	GGATC	4 cut(s)	65, 78, 776, 789
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	4 cut(s)	72, 185, 483, 698
BssECI	CCNNGG	2 cut(s)	557, 818
BssMI	GATC	4 cut(s)	70, 756, 781, 800
BssNAI	GTATAC	2 cut(s)	484, 676
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	557
Bst1107I	GTATAC	2 cut(s)	484, 676
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	320, 820
Bst4CI	ACNGT	1 cut(s)	581
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	4 cut(s)	203, 594, 718, 771
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	137, 633, 703
BstKTI	GATC	4 cut(s)	73, 759, 784, 803
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	4 cut(s)	70, 756, 781, 800
BstNI	CCWGG	2 cut(s)	320, 820
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	318, 818
BstSFI	CTRYAG	2 cut(s)	43, 760
BstSLI	GKGCMC	1 cut(s)	524
BstV1I	GCAGC	2 cut(s)	223, 672
BstV2I	GAAGAC	2 cut(s)	164, 271
BstX2I	RGATCY	3 cut(s)	70, 756, 781
BstYI	RGATCY	3 cut(s)	70, 756, 781
BstZ17I	GTATAC	2 cut(s)	484, 676
BsuRI	GGCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	137, 633, 703
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	65, 228
CviAII	CATG	2 cut(s)	737, 824
CviQI	GTAC	2 cut(s)	65, 228
DdeI	CTNAG	4 cut(s)	203, 594, 718, 771
DpnI	GATC	4 cut(s)	72, 758, 783, 802
DpnII	GATC	4 cut(s)	70, 756, 781, 800
EaeI	YGGCCR	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	318, 818
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	2 cut(s)	740, 827
FatI	CATG	2 cut(s)	736, 823
FblI	GTMKAC	2 cut(s)	483, 675
Fnu4HI	GCNGC	3 cut(s)	237, 240, 661
FokI	GGATG	3 cut(s)	124, 640, 710
Fsp4HI	GCNGC	3 cut(s)	237, 240, 661
FspBI	CTAG	4 cut(s)	30, 75, 225, 446
GluI	GCNGC	3 cut(s)	237, 240, 661
GsuI	CTGGAG	3 cut(s)	254, 453, 530
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	2 cut(s)	740, 827
HincII	GTYRAC	2 cut(s)	88, 868
HindII	GTYRAC	2 cut(s)	88, 868
HinfI	GANTC	3 cut(s)	201, 267, 646
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	447
Hpy166II	GTNNAC	4 cut(s)	88, 484, 676, 868
Hpy188I	TCNGA	5 cut(s)	36, 206, 671, 721, 774
Hpy188III	TCNNGA	4 cut(s)	141, 401, 498, 564
Hpy8I	GTNNAC	4 cut(s)	88, 484, 676, 868
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	3 cut(s)	26, 686, 762
HpyF3I	CTNAG	4 cut(s)	203, 594, 718, 771
Hsp92II	CATG	2 cut(s)	740, 827
Kpn2I	TCCGGA	1 cut(s)	140
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	70, 756, 781, 800
LmnI	GCTCC	5 cut(s)	293, 333, 449, 657, 878
Lsp1109I	GCAGC	2 cut(s)	223, 672
LweI	GCATC	3 cut(s)	13, 673, 876
MaeI	CTAG	4 cut(s)	30, 75, 225, 446
MaeIII	GTNAC	2 cut(s)	314, 561
MalI	GATC	4 cut(s)	72, 758, 783, 802
MboI	GATC	4 cut(s)	70, 756, 781, 800
MboII	GAAGA	5 cut(s)	149, 164, 276, 298, 359
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	70, 756, 781
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	7 cut(s)	53, 190, 297, 385, 404, 567, 794
MlyI	GAGTC	3 cut(s)	195, 261, 640
MmeI	TCCRAC	3 cut(s)	14, 261, 311
MnlI	CCTC	5 cut(s)	137, 343, 494, 582, 797
MroI	TCCGGA	1 cut(s)	140
MseI	TTAA	4 cut(s)	87, 516, 602, 797
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	2 cut(s)	320, 820
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	320, 820
NdeII	GATC	4 cut(s)	70, 756, 781, 800
NlaIII	CATG	2 cut(s)	740, 827
NlaIV	GGNNCC	3 cut(s)	72, 734, 783
NmuCI	GTSAC	1 cut(s)	561
OliI	CACNNNNGTG	1 cut(s)	165
PkrI	GCNGC	3 cut(s)	238, 241, 662
PleI	GAGTC	3 cut(s)	195, 261, 640
PpsI	GAGTC	3 cut(s)	195, 261, 640
Psp6I	CCWGG	2 cut(s)	318, 818
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	318, 818
PspN4I	GGNNCC	3 cut(s)	72, 734, 783
PstI	CTGCAG	1 cut(s)	764
PsuI	RGATCY	3 cut(s)	70, 756, 781
RsaI	GTAC	2 cut(s)	66, 229
RsaNI	GTAC	2 cut(s)	65, 228
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	4 cut(s)	87, 516, 602, 797
SatI	GCNGC	3 cut(s)	237, 240, 661
Sau3AI	GATC	4 cut(s)	70, 756, 781, 800
ScaI	AGTACT	2 cut(s)	66, 229
SchI	GAGTC	3 cut(s)	195, 261, 640
ScrFI	CCNGG	2 cut(s)	320, 820
SduI	GDGCHC	1 cut(s)	524
SetI	ASST	7 cut(s)	148, 226, 276, 321, 329, 454, 875
SfaNI	GCATC	3 cut(s)	13, 673, 876
SfcI	CTRYAG	2 cut(s)	43, 760
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	7 cut(s)	53, 190, 297, 385, 404, 567, 794
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	4 cut(s)	30, 75, 225, 446
StyD4I	CCNGG	2 cut(s)	318, 818
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	581
TasI	AATT	7 cut(s)	53, 190, 297, 385, 404, 567, 794
TatI	WGTACW	2 cut(s)	64, 227
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	4 cut(s)	87, 516, 602, 797
Tru9I	TTAA	4 cut(s)	87, 516, 602, 797
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	236, 660
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	5 cut(s)	126, 245, 557, 840, 864
TspGWI	ACGGA	2 cut(s)	501, 794
TspRI	CASTG	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	3 cut(s)	385, 404, 567
XmiI	GTMKAC	2 cut(s)	483, 675
XspI	CTAG	4 cut(s)	30, 75, 225, 446
ZrmI	AGTACT	2 cut(s)	66, 229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.