Rroxscaffold_7G00182500

YqaJ-like viral recombinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002455
Physical Location & Seq
Forward (+)
21604063 .. 21604872
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182500.1

Sequence Viewer

Length: 810 bp
ATGCTTGCTGCCAACCACAAACACATCATCCGCACCCAAAGTCACTCTCAAAGTTATTCTGCTGCTTACGCAATCAGTCTACAAAACAGCTCCAAAAATTGGCAACAGCTCAGAGAAGAGAAACTGACGGCGAGCACATTCGCCGCGGCTGTCGGATTCTGGCCTCGCCAGCGGGTCAAGCTCTGGCGAGAGAAGATTGGAGCTGTTAAGCCGTTTTCCGGTAACCTATCTACCTCCTGGAGTAACATCAAAGAAGAAGAAGCTGTCCTAAGATACAAGATGATTACCCAGAACAATGTTTTGCCTCCTCGGTTCCAAGTTCATAGCAAAGCTGATTGGCTCGCAGCTTCACCGGACGGGATAGTCGAATCGCCTTCCAATTCGACAGGAGTACTGGAAATCAAGTGCCCATTTTTCGACGGAGAGAAGAGCCGGGCCTTGCCTTGGTTCCGCATTCCGGCGCACTGTATCCCCCAGGCTCAGGGATTGATGGAGATTCTTGACAAAGAGTGGATGCATTTCTATGTTTGGACACTGAACGGGAGTAGCTTGTTTAAGTTGGAAAGGGACAGGGAGTATTGGGGTGTTTTGGAACAAGCTCTCTCGGATTTTTGGTGGAAACATATTCAACCGGCGAGGGAGATTTTCAGTAACAGATCGAAAACGGTGGGGAGCACGCATCTGCTATTGAAACCGTTGAGGCCAGCAGAAACGCATGAGATGATTGATCATATAGTTTGTGAAAGCAGACGCATTGTTTGTAGGTCTGAGTTGTTGGTGCGTGAAGTCCATGCCAAAATGCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YqaJ

Protein Analysis

269

Amino Acids

31.12

Weight (kDa)

9.37

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 33 - 164 1.7e-16 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 99
AccI GTMKAC 1 cut(s) 79
AccII CGCG 1 cut(s) 146
AciI CCGC 5 cut(s) 31, 144, 146, 172, 451
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 5 cut(s) 99, 218, 444, 457, 481
AgsI TTSAA 2 cut(s) 629, 691
AjnI CCWGG 2 cut(s) 236, 474
AluBI AGCT 9 cut(s) 90, 109, 181, 203, 263, 332, 347, 549, 599
AluI AGCT 9 cut(s) 90, 109, 181, 203, 263, 332, 347, 549, 599
Alw21I GWGCWC 2 cut(s) 137, 677
AoxI GGCC 3 cut(s) 161, 435, 701
ApeKI GCWGC 3 cut(s) 8, 62, 344
ArsI GACNNNNNNTTYG 2 cut(s) 741, 773
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 137, 677
BbvI GCAGC 2 cut(s) 49, 356
BccI CCATC 1 cut(s) 484
BceAI ACGGC 2 cut(s) 144, 196
BciT130I CCWGG 2 cut(s) 238, 476
BciVI GTATCC 1 cut(s) 479
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 1 cut(s) 434
BfuI GTATCC 1 cut(s) 479
BisI GCNGC 5 cut(s) 9, 63, 144, 147, 345
BlsI GCNGC 5 cut(s) 10, 64, 145, 148, 346
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 3 cut(s) 238, 434, 476
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 2 cut(s) 314, 449
BmrFI CCNGG 3 cut(s) 238, 434, 476
BmsI GCATC 2 cut(s) 504, 688
BpmI CTGGAG 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 144, 308, 443, 474
BsaWI WCCGGW 2 cut(s) 218, 352
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 218, 444, 457, 481
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 1 cut(s) 399
BseBI CCWGG 2 cut(s) 238, 476
BseDI CCNNGG 4 cut(s) 144, 308, 443, 474
BseGI GGATG 2 cut(s) 27, 519
BseLI CCNNNNNNNGG 5 cut(s) 99, 218, 444, 457, 481
BseMII CTCAG 3 cut(s) 124, 494, 759
BseNI ACTGG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 2 cut(s) 49, 356
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 3 cut(s) 163, 437, 703
BsiHKAI GWGCWC 2 cut(s) 137, 677
BsiSI CCGG 5 cut(s) 219, 353, 433, 458, 632
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 5 cut(s) 99, 218, 444, 457, 481
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 3 cut(s) 163, 437, 703
Bsp1286I GDGCHC 3 cut(s) 137, 410, 677
Bsp143I GATC 2 cut(s) 656, 727
BspACI CCGC 5 cut(s) 31, 144, 146, 172, 451
BspANI GGCC 3 cut(s) 163, 437, 703
BspCNI CTCAG 3 cut(s) 123, 493, 760
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 314, 449
BspQI GCTCTTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 4 cut(s) 144, 308, 443, 474
BssMI GATC 2 cut(s) 656, 727
BssT1I CCWWGG 1 cut(s) 443
Bst2UI CCWGG 2 cut(s) 238, 476
Bst4CI ACNGT 3 cut(s) 467, 667, 696
Bst6I CTCTTC 2 cut(s) 111, 422
BstC8I GCNNGC 6 cut(s) 6, 133, 170, 342, 677, 705
BstDEI CTNAG 4 cut(s) 110, 269, 480, 768
BstDSI CCRYGG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 2 cut(s) 27, 519
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 2 cut(s) 659, 730
BstMBI GATC 2 cut(s) 656, 727
BstMWI GCNNNNNNNGC 3 cut(s) 68, 169, 178
BstNI CCWGG 2 cut(s) 238, 476
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 236, 432, 474
BstSLI GKGCMC 1 cut(s) 410
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 49, 356
BsuI GTATCC 1 cut(s) 479
BsuRI GGCC 3 cut(s) 163, 437, 703
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 27, 519
BtsIMutI CAGTG 2 cut(s) 463, 533
Cac8I GCNNGC 6 cut(s) 6, 133, 170, 342, 677, 705
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 435
Cfr42I CCGCGG 1 cut(s) 147
CseI GACGC 1 cut(s) 759
Csp6I GTAC 1 cut(s) 392
CviAII CATG 2 cut(s) 716, 791
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 4 cut(s) 110, 269, 480, 768
DpnI GATC 2 cut(s) 658, 729
DpnII GATC 2 cut(s) 656, 727
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eam1104I CTCTTC 2 cut(s) 111, 422
EarI CTCTTC 2 cut(s) 111, 422
Eco130I CCWWGG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 236, 474
EcoT14I CCWWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 2 cut(s) 719, 794
FaiI YATR 7 cut(s) 324, 525, 624, 717, 732, 734, 792
FaqI GGGAC 1 cut(s) 581
FatI CATG 2 cut(s) 715, 790
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 5 cut(s) 9, 63, 144, 147, 345
FokI GGATG 2 cut(s) 14, 526
Fsp4HI GCNGC 5 cut(s) 9, 63, 144, 147, 345
GlaI GCGC 1 cut(s) 462
GluI GCNGC 5 cut(s) 9, 63, 144, 147, 345
GsuI CTGGAG 1 cut(s) 259
HaeIII GGCC 3 cut(s) 163, 437, 703
HapII CCGG 5 cut(s) 219, 353, 433, 458, 632
HgaI GACGC 1 cut(s) 759
HhaI GCGC 1 cut(s) 463
Hin1II CATG 2 cut(s) 719, 794
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 3 cut(s) 156, 368, 496
HpaII CCGG 5 cut(s) 219, 353, 433, 458, 632
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 4 cut(s) 113, 155, 607, 769
Hpy188III TCNNGA 1 cut(s) 500
Hpy8I GTNNAC 1 cut(s) 80
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 384
HpyCH4III ACNGT 3 cut(s) 467, 667, 696
HpyCH4V TGCA 2 cut(s) 517, 802
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 169, 178
HpyF3I CTNAG 4 cut(s) 110, 269, 480, 768
Hsp92II CATG 2 cut(s) 719, 794
HspAI GCGC 1 cut(s) 461
Ksp22I TGATCA 1 cut(s) 727
KspI CCGCGG 1 cut(s) 147
Kzo9I GATC 2 cut(s) 656, 727
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 3 cut(s) 95, 200, 672
Lsp1109I GCAGC 2 cut(s) 49, 356
LweI GCATC 2 cut(s) 504, 688
MaeIII GTNAC 4 cut(s) 41, 221, 242, 650
MalI GATC 2 cut(s) 658, 729
MboI GATC 2 cut(s) 656, 727
MboII GAAGA 5 cut(s) 128, 205, 266, 269, 439
MhlI GDGCHC 3 cut(s) 137, 410, 677
MluCI AATT 3 cut(s) 97, 379, 805
MmeI TCCRAC 2 cut(s) 133, 540
MnlI CCTC 6 cut(s) 174, 244, 315, 318, 630, 693
Mph1103I ATGCAT 1 cut(s) 519
MseI TTAA 2 cut(s) 207, 555
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 146, 172
MspI CCGG 5 cut(s) 219, 353, 433, 458, 632
MspR9I CCNGG 3 cut(s) 238, 434, 476
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 2 cut(s) 238, 476
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 68, 169, 178
NciI CCSGG 1 cut(s) 434
NdeII GATC 2 cut(s) 656, 727
NlaIII CATG 2 cut(s) 719, 794
NlaIV GGNNCC 2 cut(s) 314, 449
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 519
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 156, 368, 496
PflMI CCANNNNNTGG 1 cut(s) 99
PfoI TCCNGGA 1 cut(s) 236
PkrI GCNGC 5 cut(s) 10, 64, 145, 148, 346
Psp6I CCWGG 2 cut(s) 236, 474
PspEI GGTNACC 1 cut(s) 221
PspGI CCWGG 2 cut(s) 236, 474
PspN4I GGNNCC 2 cut(s) 314, 449
PspPI GGNCC 1 cut(s) 435
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 522
SacII CCGCGG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 207, 555
SatI GCNGC 5 cut(s) 9, 63, 144, 147, 345
Sau3AI GATC 2 cut(s) 656, 727
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 393
ScrFI CCNGG 3 cut(s) 238, 434, 476
SduI GDGCHC 3 cut(s) 137, 410, 677
SfaNI GCATC 2 cut(s) 504, 688
Sfr303I CCGCGG 1 cut(s) 147
SgrBI CCGCGG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 3 cut(s) 97, 379, 805
SsiI CCGC 5 cut(s) 31, 144, 146, 172, 451
StyD4I CCNGG 3 cut(s) 236, 432, 474
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 3 cut(s) 467, 667, 696
TaqI TCGA 4 cut(s) 366, 383, 417, 659
TasI AATT 3 cut(s) 97, 379, 805
TatI WGTACW 1 cut(s) 391
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 3 cut(s) 156, 368, 496
Tru1I TTAA 2 cut(s) 207, 555
Tru9I TTAA 2 cut(s) 207, 555
TscAI CASTG 2 cut(s) 470, 540
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 3 cut(s) 8, 62, 344
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 470, 540
Van91I CCANNNNNTGG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 79
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.