Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Reverse (-)

28223244 .. 28223507

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0178600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTCTGCGGCCTATGATGGTTGCAATGATATGCCATATTTATCCTCGGAAAATGGTTGCATTGATCGATCTGGAAGCAATAATGTTTGTGGAGGATCGATTGGCTTTCAGGATGGTGCGTACTGGGTTGAGTCTTTGGTGGAGGTCTCAAGTACTTTTGAGAAACAAAAGATAGCTGATGAAGATTGTTCAAATTGGTTGGAGTCAATCAATTTTAGTCCTGAGGAGAACAACTTCCTTTTCAGTGAAATGCAATTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

87

Amino Acids

9.58

Weight (kDa)

4.05

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	1 cut(s)	103
AfaI	GTAC	2 cut(s)	122, 154
AgsI	TTSAA	1 cut(s)	192
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	233
AxyI	CCTNAGG	1 cut(s)	222
BccI	CCATC	2 cut(s)	11, 107
BcoDI	GTCTC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmcAI	AGTACT	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	133
BmuI	ACTGGG	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	133
Bsa29I	ATCGAT	2 cut(s)	67, 98
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	31
BseCI	ATCGAT	2 cut(s)	67, 98
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	11
BshVI	ATCGAT	2 cut(s)	67, 98
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	64, 68, 95
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	2 cut(s)	67, 98
BspPI	GGATC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	64, 68, 95
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	67, 71, 98
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	64, 68, 95
Bsu15I	ATCGAT	2 cut(s)	67, 98
Bsu36I	CCTNAGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	11
BsuTUI	ATCGAT	2 cut(s)	67, 98
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	250
ClaI	ATCGAT	2 cut(s)	67, 98
Csp6I	GTAC	2 cut(s)	121, 153
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	3 cut(s)	11, 105, 176
CviKI_1	RGCY	3 cut(s)	11, 105, 176
CviQI	GTAC	2 cut(s)	121, 153
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	66, 70, 97
DpnII	GATC	3 cut(s)	64, 68, 95
Eco31I	GGTCTC	1 cut(s)	151
Eco81I	CCTNAGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	264
FaiI	YATR	4 cut(s)	15, 32, 37, 262
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	2 cut(s)	131, 203
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	72, 110, 221
HpyCH4V	TGCA	3 cut(s)	24, 60, 253
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	64, 68, 95
LpnPI	CCDG	4 cut(s)	57, 95, 109, 234
MalI	GATC	3 cut(s)	66, 70, 97
MboI	GATC	3 cut(s)	64, 68, 95
MboII	GAAGA	1 cut(s)	194
MfeI	CAATTG	1 cut(s)	254
MluCI	AATT	3 cut(s)	193, 211, 254
MlyI	GAGTC	2 cut(s)	140, 212
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	4 cut(s)	55, 86, 136, 217
MroXI	GAANNNNTTC	1 cut(s)	233
MunI	CAATTG	1 cut(s)	254
NdeII	GATC	3 cut(s)	64, 68, 95
NlaIII	CATG	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	139, 211
PpsI	GAGTC	2 cut(s)	139, 211
RsaI	GTAC	2 cut(s)	122, 154
RsaNI	GTAC	2 cut(s)	121, 153
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	64, 68, 95
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	2 cut(s)	140, 212
SetI	ASST	2 cut(s)	147, 178
SgeI	CNNG	6 cut(s)	58, 84, 122, 136, 162, 233
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	193, 211, 254
SsiI	CCGC	1 cut(s)	8
TaqI	TCGA	2 cut(s)	67, 98
TasI	AATT	3 cut(s)	193, 211, 254
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.