Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002455

Physical Location & Seq

Genomic Coordinates Forward (+)

25168728 .. 25171347

Gene Structure 2620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G287100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCAATTAGTCGGAGAAACTAGAGCAACCAATTATTTTCATAGTAATAGTATGCTTGTTAACCACAGACAAGTTCTCAATCCTTCGAGATTTGCTTCATCTGGAGGTTATCCTGTTCTTCACTCAAGTGGACTTCAGCACTGGTTCAAAAATTGGCAAGGACACAGAAAACATAAACTGACAGCTAGCACTTTTGCTGCCGCCGTTGGTTTTTTCCATCGCCGAAGACTCCAGCTTTGGTTAGAGAAGATTGGAGCAATTGAGCCATTTTCGGGTAACCTGGCTACCTGTTGGAGCAATATCAAAGAAGAGGAAGCACTTGAAAGATACAAGCTGATAACAGGAAATTCTGTCTTGTTTCCTGAATTTCAAGTCTATGGTAATACAAATGCTGGAGATGATTGGCTAGGAGCTTCACCAGACGGGGTGGTTGATAGGCTGGTATACGGATTGTCTTCACGAGGAGTACTGGAGATTAAGTGCCCATTTTTCGATGGAAATATGAAAAAGGCTACCCCTTGGCCGCGAATTCCTTTGTACTGTGTTCCACAGGCTCAGGGTTTAATGGAAATACTTGACAGGGATTGGATGGATTTCTATGTTTGGACTCCTAAAGGGAGTAGCCTATTCAGGTTATACAGGGATGCAGAGTACTGGGATGTTTTGAAAATGGTTCTCTCAGATTTTTGGTGGAATCATGTCCAGCCAGCAAGGGAGATGTGCAGTAAGTCTCAGATTACTGATCCCCTTGTTGAATTAAGATCGCTCAAACCAGCACCCAGGCATGAAATGTGTAGTTATGTAGTTTATGAAAGCAAACGCGTTGTTGATAGCTCCAAGTTATTGATGCGTGAAATCAATGGCAAACTGATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YqaJ

Protein Analysis

293

Amino Acids

33.7

Weight (kDa)

9.01

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13810
fragaria_vesca	FvH4_2g14912 FvH4_2g14912 FvH4_2g20261
malus_domestica	MD14G1083500.v1.1
prunus_persica	Prupe.3G017000_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1 Prupe.4G287100_v2.0.a1
pyrus_communis	pycom14g07250
rosa_chinensis	RchiOBHm_Chr6g0277511 RchiOBHm_Chr6g0286051
rosa_laevigata	RLG00000012586 RLG00000013296
rosa_multiflora	Rmu_sc0003910.1_g000009 Rmu_sc0032216.1_g000001 Rmu_sc0035337.1_g000001 Rmu_sc0035338.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182500 Rroxscaffold_7G00191260
rosa_rugosa	Rorug06G0108700 Rorug06G0108700 Rorug06G0108800 Rorug06G0108900 Rorug06G0109000 Rorug06G0109100 Rorug06G0109200 Rorug06G0109300 Rorug06G0178600
rosa_samantha	Rh6AG219600 Rh6AG290700 Rh6BG223500 Rh6BG294100 Rh6CG226000 Rh6CG293600 Rh6DG216400 Rh6DG285700 Rh7AG416300 Rh7CG435600
rosa_wichuraiana	Rw6G019230 Rw6G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	2 cut(s)	526, 822
AciI	CCGC	2 cut(s)	201, 524
AclWI	GGATC	1 cut(s)	737
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	3 cut(s)	346, 365, 528
AcuI	CTGAAG	1 cut(s)	119
AfaI	GTAC	3 cut(s)	468, 539, 653
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	820
AgsI	TTSAA	5 cut(s)	148, 323, 371, 667, 755
AjnI	CCWGG	2 cut(s)	279, 779
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	5 cut(s)	185, 235, 334, 413, 834
AluI	AGCT	5 cut(s)	185, 235, 334, 413, 834
Alw26I	GTCTC	1 cut(s)	735
AlwI	GGATC	1 cut(s)	737
AoxI	GGCC	1 cut(s)	521
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	346, 365, 528
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AsuHPI	GGTGA	1 cut(s)	408
AsuNHI	GCTAGC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	232, 447
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	225, 488, 583
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	2 cut(s)	281, 781
BcoDI	GTCTC	1 cut(s)	735
BfaI	CTAG	3 cut(s)	21, 186, 407
BisI	GCNGC	3 cut(s)	198, 201, 524
BlsI	GCNGC	3 cut(s)	199, 202, 525
BmcAI	AGTACT	2 cut(s)	468, 653
Bme1390I	CCNGG	2 cut(s)	281, 781
BmrFI	CCNGG	2 cut(s)	281, 781
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	2 cut(s)	634, 837
BmtI	GCTAGC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	2 cut(s)	232, 447
BpmI	CTGGAG	4 cut(s)	123, 215, 414, 491
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	518, 779
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	146, 474, 659
BseBI	CCWGG	2 cut(s)	281, 781
BseDI	CCNNGG	2 cut(s)	518, 779
BseGI	GGATG	3 cut(s)	594, 649, 664
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	569, 693, 746
BseNI	ACTGG	3 cut(s)	146, 474, 659
BseRI	GAGGAG	1 cut(s)	477
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	2 cut(s)	526, 822
BshFI	GGCC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	735
BsnI	GGCC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	2 cut(s)	742, 761
BspACI	CCGC	2 cut(s)	201, 524
BspANI	GGCC	1 cut(s)	523
BspCNI	CTCAG	3 cut(s)	568, 692, 745
BspFNI	CGCG	2 cut(s)	526, 822
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	737
BsrI	ACTGG	3 cut(s)	146, 474, 659
BssECI	CCNNGG	2 cut(s)	518, 779
BssMI	GATC	2 cut(s)	742, 761
BssNAI	GTATAC	1 cut(s)	445
BssSI	CACGAG	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	518
Bst1107I	GTATAC	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	2 cut(s)	281, 781
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	187, 708
BstDEI	CTNAG	3 cut(s)	555, 679, 732
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	594, 649, 664
BstFNI	CGCG	2 cut(s)	526, 822
BstKTI	GATC	2 cut(s)	745, 764
BstMAI	GTCTC	1 cut(s)	735
BstMBI	GATC	2 cut(s)	742, 761
BstNI	CCWGG	2 cut(s)	281, 781
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	279, 779
BstSLI	GKGCMC	1 cut(s)	485
BstUI	CGCG	2 cut(s)	526, 822
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	2 cut(s)	232, 447
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	523
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	3 cut(s)	594, 649, 664
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	187, 708
Csp6I	GTAC	3 cut(s)	467, 538, 652
CviAII	CATG	2 cut(s)	698, 785
CviQI	GTAC	3 cut(s)	467, 538, 652
DdeI	CTNAG	3 cut(s)	555, 679, 732
DpnI	GATC	2 cut(s)	744, 763
DpnII	GATC	2 cut(s)	742, 761
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	119
Eco91I	GGTNACC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	2 cut(s)	279, 779
EcoT14I	CCWWGG	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	2 cut(s)	701, 788
FatI	CATG	2 cut(s)	697, 784
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	198, 201, 524
FokI	GGATG	3 cut(s)	601, 656, 671
Fsp4HI	GCNGC	3 cut(s)	198, 201, 524
FspBI	CTAG	3 cut(s)	21, 186, 407
GluI	GCNGC	3 cut(s)	198, 201, 524
GsuI	CTGGAG	4 cut(s)	123, 215, 414, 491
HaeIII	GGCC	1 cut(s)	523
Hin1II	CATG	2 cut(s)	701, 788
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	228, 607, 694
HpaI	GTTAAC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	408
Hpy166II	GTNNAC	3 cut(s)	61, 131, 445
Hpy188I	TCNGA	3 cut(s)	14, 682, 735
Hpy188III	TCNNGA	4 cut(s)	87, 102, 362, 459
Hpy8I	GTNNAC	3 cut(s)	61, 131, 445
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	4, 647, 723
HpyF3I	CTNAG	3 cut(s)	555, 679, 732
Hsp92II	CATG	2 cut(s)	701, 788
KspAI	GTTAAC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	742, 761
LmnI	GCTCC	4 cut(s)	254, 294, 410, 839
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	634, 837
MaeI	CTAG	3 cut(s)	21, 186, 407
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	744, 763
MboI	GATC	2 cut(s)	742, 761
MboII	GAAGA	5 cut(s)	110, 237, 259, 320, 447
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	8 cut(s)	5, 31, 151, 258, 346, 365, 528, 755
MluI	ACGCGT	1 cut(s)	820
MlyI	GAGTC	2 cut(s)	222, 601
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	98, 304, 455
MseI	TTAA	4 cut(s)	60, 477, 563, 758
MslI	CAYNNNNRTG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	281, 781
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	281, 781
MvnI	CGCG	2 cut(s)	526, 822
NdeII	GATC	2 cut(s)	742, 761
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	2 cut(s)	701, 788
OliI	CACNNNNGTG	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	694
PkrI	GCNGC	3 cut(s)	199, 202, 525
PleI	GAGTC	2 cut(s)	222, 601
PpsI	GAGTC	2 cut(s)	222, 601
Psp6I	CCWGG	2 cut(s)	279, 779
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	279, 779
RsaI	GTAC	3 cut(s)	468, 539, 653
RsaNI	GTAC	3 cut(s)	467, 538, 652
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	4 cut(s)	60, 477, 563, 758
SatI	GCNGC	3 cut(s)	198, 201, 524
Sau3AI	GATC	2 cut(s)	742, 761
ScaI	AGTACT	2 cut(s)	468, 653
SchI	GAGTC	2 cut(s)	222, 601
ScrFI	CCNGG	2 cut(s)	281, 781
SduI	GDGCHC	1 cut(s)	485
SetI	ASST	9 cut(s)	109, 187, 237, 282, 290, 336, 415, 635, 836
SfaNI	GCATC	2 cut(s)	634, 837
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	8 cut(s)	5, 31, 151, 258, 346, 365, 528, 755
SsiI	CCGC	2 cut(s)	201, 524
SspMI	CTAG	3 cut(s)	21, 186, 407
StyD4I	CCNGG	2 cut(s)	279, 779
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	86, 492
TasI	AATT	8 cut(s)	5, 31, 151, 258, 346, 365, 528, 755
TatI	WGTACW	3 cut(s)	466, 537, 651
TauI	GCSGC	2 cut(s)	203, 526
TfiI	GAWTC	1 cut(s)	694
Tru1I	TTAA	4 cut(s)	60, 477, 563, 758
Tru9I	TTAA	4 cut(s)	60, 477, 563, 758
TscAI	CASTG	1 cut(s)	146
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	5 cut(s)	29, 87, 518, 801, 825
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	3 cut(s)	346, 365, 528
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	3 cut(s)	21, 186, 407
ZrmI	AGTACT	2 cut(s)	468, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.